Gchil7176.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7176.t1
Unique NameGchil7176.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:429655..430227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog69319.XP_008552588.1
Preferred nameJOSD1
PFAMsJosephin
Max annot lvl33208|Metazoa
KEGG koko:K15235
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0036211,GO:0036459,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0101005,GO:0140096,GO:1901564
Evalue1.51e-22
EggNOG OGsKOG2934@1|root,KOG2934@2759|Eukaryota,39SVM@33154|Opisthokonta,3BARU@33208|Metazoa,3CWKE@33213|Bilateria,41XII@6656|Arthropoda,3SJ9Y@50557|Insecta,46EAV@7399|Hymenoptera
EC3.4.19.12
DescriptionJosephin
COG categoryS
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7176Gchil7176Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 429655..430227 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7176.t1.start1Gchil7176.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 429655..429657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7176.t1.CDS1Gchil7176.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 429655..430227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7176.t1.exon1Gchil7176.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 429655..430227 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7176.t1.stop1Gchil7176.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 430225..430227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7176.t1Gchil7176.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 429655..430227 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7176.t1 ID=Gchil7176.t1|Name=Gchil7176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=191bp
MTEIPSNPRVYSERQSRFRCGLHAINALLKYPAYTPASLDAIADDLRSYH
GANTNHFRHPHRSMLGMGDYDINVLLVALQQHGMSARWFSQKQQIQSVIN
SPHLVGFLVNLRATSFLARAFSFLFEDSRHWVAIPRYYSNFFLVDSKRNQ
PWKFPSNPHLMNYFQQIMAHDAHVFIVEREQQADEQLHAT*
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spliced messenger RNA

>Gchil7176.t1 ID=Gchil7176.t1|Name=Gchil7176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00004441_pilon:429655..430227+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGAAATTCCATCAAACCCAAGGGTTTACAGCGAGCGCCAGAGTCG
CTTTCGCTGCGGTTTACACGCCATCAACGCTCTGCTCAAGTACCCGGCCT
ACACACCCGCGTCTCTTGACGCCATAGCTGATGATCTCCGCTCCTATCAT
GGGGCCAACACAAATCATTTTCGACACCCTCACAGGTCTATGCTGGGAAT
GGGTGATTATGACATCAATGTGTTGCTCGTTGCGCTGCAACAACATGGAA
TGTCCGCGCGCTGGTTTTCGCAAAAGCAGCAAATACAAAGCGTTATCAAC
TCTCCTCATCTCGTCGGGTTTCTAGTTAATCTACGGGCCACTTCCTTTCT
CGCAAGAGCGTTTAGCTTTTTGTTCGAGGACAGCAGACACTGGGTTGCAA
TTCCACGGTATTACAGTAACTTTTTCCTTGTTGATTCTAAAAGGAATCAG
CCCTGGAAGTTTCCATCGAACCCGCATCTCATGAATTACTTTCAGCAAAT
CATGGCTCACGACGCGCACGTATTCATCGTAGAACGGGAACAACAGGCTG
ACGAACAACTTCACGCAACGTAG
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protein sequence of Gchil7176.t1

>Gchil7176.t1 ID=Gchil7176.t1|Name=Gchil7176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=191bp
MTEIPSNPRVYSERQSRFRCGLHAINALLKYPAYTPASLDAIADDLRSYH
GANTNHFRHPHRSMLGMGDYDINVLLVALQQHGMSARWFSQKQQIQSVIN
SPHLVGFLVNLRATSFLARAFSFLFEDSRHWVAIPRYYSNFFLVDSKRNQ
PWKFPSNPHLMNYFQQIMAHDAHVFIVEREQQADEQLHAT*
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mRNA from alignment at tig00004441_pilon:429655..430227+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7176.t1 ID=Gchil7176.t1|Name=Gchil7176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00004441_pilon:429655..430227+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGAAATTCCATCAAACCCAAGGGTTTACAGCGAGCGCCAGAGTCG
CTTTCGCTGCGGTTTACACGCCATCAACGCTCTGCTCAAGTACCCGGCCT
ACACACCCGCGTCTCTTGACGCCATAGCTGATGATCTCCGCTCCTATCAT
GGGGCCAACACAAATCATTTTCGACACCCTCACAGGTCTATGCTGGGAAT
GGGTGATTATGACATCAATGTGTTGCTCGTTGCGCTGCAACAACATGGAA
TGTCCGCGCGCTGGTTTTCGCAAAAGCAGCAAATACAAAGCGTTATCAAC
TCTCCTCATCTCGTCGGGTTTCTAGTTAATCTACGGGCCACTTCCTTTCT
CGCAAGAGCGTTTAGCTTTTTGTTCGAGGACAGCAGACACTGGGTTGCAA
TTCCACGGTATTACAGTAACTTTTTCCTTGTTGATTCTAAAAGGAATCAG
CCCTGGAAGTTTCCATCGAACCCGCATCTCATGAATTACTTTCAGCAAAT
CATGGCTCACGACGCGCACGTATTCATCGTAGAACGGGAACAACAGGCTG
ACGAACAACTTCACGCAACGTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:429655..430227+

>Gchil7176.t1 ID=Gchil7176.t1|Name=Gchil7176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00004441_pilon:429655..430227+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGAAATTCCATCAAACCCAAGGGTTTACAGCGAGCGCCAGAGTCG
CTTTCGCTGCGGTTTACACGCCATCAACGCTCTGCTCAAGTACCCGGCCT
ACACACCCGCGTCTCTTGACGCCATAGCTGATGATCTCCGCTCCTATCAT
GGGGCCAACACAAATCATTTTCGACACCCTCACAGGTCTATGCTGGGAAT
GGGTGATTATGACATCAATGTGTTGCTCGTTGCGCTGCAACAACATGGAA
TGTCCGCGCGCTGGTTTTCGCAAAAGCAGCAAATACAAAGCGTTATCAAC
TCTCCTCATCTCGTCGGGTTTCTAGTTAATCTACGGGCCACTTCCTTTCT
CGCAAGAGCGTTTAGCTTTTTGTTCGAGGACAGCAGACACTGGGTTGCAA
TTCCACGGTATTACAGTAACTTTTTCCTTGTTGATTCTAAAAGGAATCAG
CCCTGGAAGTTTCCATCGAACCCGCATCTCATGAATTACTTTCAGCAAAT
CATGGCTCACGACGCGCACGTATTCATCGTAGAACGGGAACAACAGGCTG
ACGAACAACTTCACGCAACGTAG
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