Gchil7164.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7164.t1
Unique Name	Gchil7164.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:395537..397606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705767.1
Preferred name	WDR48
PFAMs	DUF3337,WD40
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15361
KEGG Pathway	ko03460,map03460
GOs	GO:0000003,GO:0000724,GO:0000725,GO:0001501,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007276,GO:0007283,GO:0007338,GO:0007548,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008406,GO:0008584,GO:0009566,GO:0009653,GO:0009790,GO:0009887,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019953,GO:0022414,GO:0030162,GO:0030428,GO:0031323,GO:0031325,GO:0031396,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032182,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0034641,GO:0035264,GO:0035295,GO:0036211,GO:0036459,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042592,GO:0042769,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045862,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048513,GO:0048518,GO:0048520,GO:0048522,GO:0048568,GO:0048589,GO:0048608,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048872,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051286,GO:0051606,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072520,GO:0080090,GO:0090085,GO:0090304,GO:0090325,GO:0090326,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1902525,GO:1903003,GO:1903320,GO:1903322,GO:1903827,GO:1903829,GO:2000008,GO:2000010
Evalue	1.63e-109
EggNOG OGs	KOG0308@1\|root,KOG0308@2759\|Eukaryota
Description	regulation of protein monoubiquitination
COG category	T
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7164	Gchil7164	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 395537..397606 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7164.t1.start1	Gchil7164.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 395537..395539 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7164.t1.CDS1	Gchil7164.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 395537..397606 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7164.t1.exon1	Gchil7164.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 395537..397606 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7164.t1.stop1	Gchil7164.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 397604..397606 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7164.t1	Gchil7164.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 395537..397606 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:395537..397606+
coding sequence from alignment at tig00004441_pilon:395537..397606+

mRNA sequence

>Gchil7164.t1 ID=Gchil7164.t1|Name=Gchil7164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp
MVGSAAVDRYPPRRNDRVTYVLRAPERRHRFGISALALSKQQLITAGRDG
TVRSWSLPPSNRLLNKSLSISKTSINANLTFDEHTDWVNDVLLLSDRDRI
VSCSSDTTLKVWSASNSARSLRTLSNHTDYVKALAQVPNGVASGSLDARV
LLWDLATGRVRIECTSQNGDNDHSGSVYCMAAAHDENILISGSTNRLISV
WDIRTGDRIVSLRGHSDSVRCLAIKSDASQMLSGATDSTVRLWDMRMQRC
IRSYDSPTGSSVWAVAALPNFDKFIWGFRDGSVSYTDVNAHSNASMGSTI
VPPAETDCRNNMVLDLKLSPCLSSVWVSTTGSSVRLWPLPTDGNRSRPSL
ANYVKDRRPTTRSDTAPQFPRLDAAYVPLYTIPGLPGIISHRIMNDKRHV
LTCNTDGEFCIWNITQGTLVKSLGVIQEDIEEVAKRNDQEVTVPSWFQVD
IRLGSLSVRLDRNTVANAEIYAIDAGLQASSEDIKVNIGEHVLRGLFRNW
VTEYKRINAVDEDGGYLQGRSPPTQAQRAAASRAAELPEYRFPDHIPIII
TEDRSPLPILRKTVSGFSGTEEDLLPSWVIDLVRDGKNQVRDAVKLSFTL
EPAEGSTLPQLSPTSLHAARVLRVRKVISYIAKELKDLRSEQDIEVEPQD
LEVLCNGQVLSPTMSLAAVRQFRWRSPEDLQLHFRLKET*

spliced messenger RNA

>Gchil7164.t1 ID=Gchil7164.t1|Name=Gchil7164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00004441_pilon:395537..397606+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGTAGTGCTGCCGTCGACCGCTACCCCCCGCGACGGAATGACCG
CGTCACCTACGTGCTCCGCGCCCCTGAACGGCGCCATCGATTCGGCATAT
CCGCCCTAGCCCTCAGCAAGCAACAGCTCATCACTGCTGGACGTGATGGA
ACCGTGCGCTCCTGGTCTTTGCCCCCCTCAAATCGCCTTTTGAACAAGTC
CCTATCCATCTCCAAAACCTCCATCAACGCTAATCTCACCTTTGACGAAC
ACACAGACTGGGTCAACGACGTGCTGCTTCTATCGGACCGCGATCGAATT
GTGTCCTGCTCCTCGGACACCACCCTCAAAGTTTGGTCTGCTTCCAACTC
TGCCCGTAGCCTTAGAACGCTTTCCAATCACACCGATTACGTAAAGGCCC
TCGCCCAAGTCCCAAACGGCGTTGCCAGCGGTTCTTTAGATGCTAGAGTT
CTCCTCTGGGATCTTGCTACGGGTCGCGTGCGAATCGAGTGCACCAGTCA
GAATGGGGACAACGATCATAGCGGCTCGGTGTACTGCATGGCCGCCGCCC
ACGACGAAAACATTCTCATCTccggctcaaccaatcgcctcatctctgtg
tgggacattcgtactggcgatcgaatagtcagtttgcgaggacacagtga
ttcagtccgctgcctcgcaatcaaatcggatgcaagTCAAATGCTCTCTG
GTGCCACAGACTCCACCGTCCGACTCTGGGATATGCGTATGCAGCGATGT
ATCAGATCTTATGATTCCCCCACCGGCAGTAGTGTATGGGCCGTTGCCGC
GCTGCCGAACTTTGACAAGTTCATCTGGGGCTTTCGCGACGGTTCTGTTT
CGTATACAGACGTCAATGCTCACTCTAATGCGAGTATGGGATCAACTATC
GTTCCTCCGGCCGAAACGGATTGCCGAAACAATATGGTTCTTGATCTAAA
GCTCTCGCCATGCCTTTCTTCCGTTTGGGTTAGCACCACAGGTTCTTCCG
TTCGTCTGTGGCCCTTACCAACAGATGGCAATCGCTCTCGTCCTAGTCTT
GCCAATTATGTCAAAGACCGTAGACCTACGACGCGAAGTGATACTGCGCC
CCAATTTCCACGTCTGGATGCAGCCTATGTGCCTCTGTACACTATTCCTG
GTCTACCAGGCATCATCTCACATCGAATCATGAATGACAAACGTCATGTG
CTGACATGCAACACCGACGGCGAGTTTTGTATCTGGAATATAACTCAGGG
CACTCTGGTCAAGTCACTCGGTGTCATCCAAGAGGATATTGAAGAAGTTG
CGAAACGGAACGACCAAGAAGTGACCGTCCCCAGTTGGTTCCAGGTGGAT
ATCCGCCTGGGTTCCCTCTCAGTCAGGCTAGATAGGAACACTGTGGCCAA
CGCAGAGATATATGCGATCGACGCTGGTCTCCAAGCCAGCTCGGAAGACA
TTAAGGTCAACATAGGCGAGCATGTACTGCGTGGTCTTTTCCGAAACTGG
GTCACTGAGTACAAGCGAATTAATGCAGTTGATGAAGACGGTGGGTATCT
ACAAGGTCGAAGCCCTCCAACTCAGGCACAAAGGGCTGCAGCCTCACGAG
CCGCAGAACTACCTGAATATCGTTTTCCGGACCACATTCCAATCATAATT
ACTGAAGATCGATCACCTCTCCCCATTTTGCGGAAAACGGTATCTGGATT
CTCGGGCACAGAGGAAGATTTACTGCCTTCATGGGTGATTGATTTGGTTA
GAGACGGTAAGAACCAAGTACGAGACGCTGTCAAGCTTAGTTTCACCTTG
GAACCTGCCGAAGGGAGCACGCTTCCACAGCTATCACCAACTTCACTGCA
TGCTGCAAGAGTGTTGCGTGTGCGCAAGGTTATTAGTTACATTGCAAAGG
AATTGAAGGATCTTAGATCAGAGCAAGATATTGAAGTTGAACCGCAAGAC
CTGGAAGTTCTCTGCAATGGTCAGGTACTTTCACCTACAATGAGCCTTGC
CGCCGTAAGACAATTTAGATGGCGATCGCCTGAAGATCTTCAACTTCATT
TCAGACTGAAGGAGACGTAA

protein sequence of Gchil7164.t1

>Gchil7164.t1 ID=Gchil7164.t1|Name=Gchil7164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=690bp
MVGSAAVDRYPPRRNDRVTYVLRAPERRHRFGISALALSKQQLITAGRDG
TVRSWSLPPSNRLLNKSLSISKTSINANLTFDEHTDWVNDVLLLSDRDRI
VSCSSDTTLKVWSASNSARSLRTLSNHTDYVKALAQVPNGVASGSLDARV
LLWDLATGRVRIECTSQNGDNDHSGSVYCMAAAHDENILISGSTNRLISV
WDIRTGDRIVSLRGHSDSVRCLAIKSDASQMLSGATDSTVRLWDMRMQRC
IRSYDSPTGSSVWAVAALPNFDKFIWGFRDGSVSYTDVNAHSNASMGSTI
VPPAETDCRNNMVLDLKLSPCLSSVWVSTTGSSVRLWPLPTDGNRSRPSL
ANYVKDRRPTTRSDTAPQFPRLDAAYVPLYTIPGLPGIISHRIMNDKRHV
LTCNTDGEFCIWNITQGTLVKSLGVIQEDIEEVAKRNDQEVTVPSWFQVD
IRLGSLSVRLDRNTVANAEIYAIDAGLQASSEDIKVNIGEHVLRGLFRNW
VTEYKRINAVDEDGGYLQGRSPPTQAQRAAASRAAELPEYRFPDHIPIII
TEDRSPLPILRKTVSGFSGTEEDLLPSWVIDLVRDGKNQVRDAVKLSFTL
EPAEGSTLPQLSPTSLHAARVLRVRKVISYIAKELKDLRSEQDIEVEPQD
LEVLCNGQVLSPTMSLAAVRQFRWRSPEDLQLHFRLKET*

mRNA from alignment at tig00004441_pilon:395537..397606+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7164.t1 ID=Gchil7164.t1|Name=Gchil7164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2070bp|location=Sequence derived from alignment at tig00004441_pilon:395537..397606+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGTAGTGCTGCCGTCGACCGCTACCCCCCGCGACGGAATGACCG
CGTCACCTACGTGCTCCGCGCCCCTGAACGGCGCCATCGATTCGGCATAT
CCGCCCTAGCCCTCAGCAAGCAACAGCTCATCACTGCTGGACGTGATGGA
ACCGTGCGCTCCTGGTCTTTGCCCCCCTCAAATCGCCTTTTGAACAAGTC
CCTATCCATCTCCAAAACCTCCATCAACGCTAATCTCACCTTTGACGAAC
ACACAGACTGGGTCAACGACGTGCTGCTTCTATCGGACCGCGATCGAATT
GTGTCCTGCTCCTCGGACACCACCCTCAAAGTTTGGTCTGCTTCCAACTC
TGCCCGTAGCCTTAGAACGCTTTCCAATCACACCGATTACGTAAAGGCCC
TCGCCCAAGTCCCAAACGGCGTTGCCAGCGGTTCTTTAGATGCTAGAGTT
CTCCTCTGGGATCTTGCTACGGGTCGCGTGCGAATCGAGTGCACCAGTCA
GAATGGGGACAACGATCATAGCGGCTCGGTGTACTGCATGGCCGCCGCCC
ACGACGAAAACATTCTCATCTccggctcaaccaatcgcctcatctctgtg
tgggacattcgtactggcgatcgaatagtcagtttgcgaggacacagtga
ttcagtccgctgcctcgcaatcaaatcggatgcaagTCAAATGCTCTCTG
GTGCCACAGACTCCACCGTCCGACTCTGGGATATGCGTATGCAGCGATGT
ATCAGATCTTATGATTCCCCCACCGGCAGTAGTGTATGGGCCGTTGCCGC
GCTGCCGAACTTTGACAAGTTCATCTGGGGCTTTCGCGACGGTTCTGTTT
CGTATACAGACGTCAATGCTCACTCTAATGCGAGTATGGGATCAACTATC
GTTCCTCCGGCCGAAACGGATTGCCGAAACAATATGGTTCTTGATCTAAA
GCTCTCGCCATGCCTTTCTTCCGTTTGGGTTAGCACCACAGGTTCTTCCG
TTCGTCTGTGGCCCTTACCAACAGATGGCAATCGCTCTCGTCCTAGTCTT
GCCAATTATGTCAAAGACCGTAGACCTACGACGCGAAGTGATACTGCGCC
CCAATTTCCACGTCTGGATGCAGCCTATGTGCCTCTGTACACTATTCCTG
GTCTACCAGGCATCATCTCACATCGAATCATGAATGACAAACGTCATGTG
CTGACATGCAACACCGACGGCGAGTTTTGTATCTGGAATATAACTCAGGG
CACTCTGGTCAAGTCACTCGGTGTCATCCAAGAGGATATTGAAGAAGTTG
CGAAACGGAACGACCAAGAAGTGACCGTCCCCAGTTGGTTCCAGGTGGAT
ATCCGCCTGGGTTCCCTCTCAGTCAGGCTAGATAGGAACACTGTGGCCAA
CGCAGAGATATATGCGATCGACGCTGGTCTCCAAGCCAGCTCGGAAGACA
TTAAGGTCAACATAGGCGAGCATGTACTGCGTGGTCTTTTCCGAAACTGG
GTCACTGAGTACAAGCGAATTAATGCAGTTGATGAAGACGGTGGGTATCT
ACAAGGTCGAAGCCCTCCAACTCAGGCACAAAGGGCTGCAGCCTCACGAG
CCGCAGAACTACCTGAATATCGTTTTCCGGACCACATTCCAATCATAATT
ACTGAAGATCGATCACCTCTCCCCATTTTGCGGAAAACGGTATCTGGATT
CTCGGGCACAGAGGAAGATTTACTGCCTTCATGGGTGATTGATTTGGTTA
GAGACGGTAAGAACCAAGTACGAGACGCTGTCAAGCTTAGTTTCACCTTG
GAACCTGCCGAAGGGAGCACGCTTCCACAGCTATCACCAACTTCACTGCA
TGCTGCAAGAGTGTTGCGTGTGCGCAAGGTTATTAGTTACATTGCAAAGG
AATTGAAGGATCTTAGATCAGAGCAAGATATTGAAGTTGAACCGCAAGAC
CTGGAAGTTCTCTGCAATGGTCAGGTACTTTCACCTACAATGAGCCTTGC
CGCCGTAAGACAATTTAGATGGCGATCGCCTGAAGATCTTCAACTTCATT
TCAGACTGAAGGAGACGTAA

Coding sequence (CDS) from alignment at tig00004441_pilon:395537..397606+

>Gchil7164.t1 ID=Gchil7164.t1|Name=Gchil7164.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2070bp|location=Sequence derived from alignment at tig00004441_pilon:395537..397606+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGTAGTGCTGCCGTCGACCGCTACCCCCCGCGACGGAATGACCG
CGTCACCTACGTGCTCCGCGCCCCTGAACGGCGCCATCGATTCGGCATAT
CCGCCCTAGCCCTCAGCAAGCAACAGCTCATCACTGCTGGACGTGATGGA
ACCGTGCGCTCCTGGTCTTTGCCCCCCTCAAATCGCCTTTTGAACAAGTC
CCTATCCATCTCCAAAACCTCCATCAACGCTAATCTCACCTTTGACGAAC
ACACAGACTGGGTCAACGACGTGCTGCTTCTATCGGACCGCGATCGAATT
GTGTCCTGCTCCTCGGACACCACCCTCAAAGTTTGGTCTGCTTCCAACTC
TGCCCGTAGCCTTAGAACGCTTTCCAATCACACCGATTACGTAAAGGCCC
TCGCCCAAGTCCCAAACGGCGTTGCCAGCGGTTCTTTAGATGCTAGAGTT
CTCCTCTGGGATCTTGCTACGGGTCGCGTGCGAATCGAGTGCACCAGTCA
GAATGGGGACAACGATCATAGCGGCTCGGTGTACTGCATGGCCGCCGCCC
ACGACGAAAACATTCTCATCTccggctcaaccaatcgcctcatctctgtg
tgggacattcgtactggcgatcgaatagtcagtttgcgaggacacagtga
ttcagtccgctgcctcgcaatcaaatcggatgcaagTCAAATGCTCTCTG
GTGCCACAGACTCCACCGTCCGACTCTGGGATATGCGTATGCAGCGATGT
ATCAGATCTTATGATTCCCCCACCGGCAGTAGTGTATGGGCCGTTGCCGC
GCTGCCGAACTTTGACAAGTTCATCTGGGGCTTTCGCGACGGTTCTGTTT
CGTATACAGACGTCAATGCTCACTCTAATGCGAGTATGGGATCAACTATC
GTTCCTCCGGCCGAAACGGATTGCCGAAACAATATGGTTCTTGATCTAAA
GCTCTCGCCATGCCTTTCTTCCGTTTGGGTTAGCACCACAGGTTCTTCCG
TTCGTCTGTGGCCCTTACCAACAGATGGCAATCGCTCTCGTCCTAGTCTT
GCCAATTATGTCAAAGACCGTAGACCTACGACGCGAAGTGATACTGCGCC
CCAATTTCCACGTCTGGATGCAGCCTATGTGCCTCTGTACACTATTCCTG
GTCTACCAGGCATCATCTCACATCGAATCATGAATGACAAACGTCATGTG
CTGACATGCAACACCGACGGCGAGTTTTGTATCTGGAATATAACTCAGGG
CACTCTGGTCAAGTCACTCGGTGTCATCCAAGAGGATATTGAAGAAGTTG
CGAAACGGAACGACCAAGAAGTGACCGTCCCCAGTTGGTTCCAGGTGGAT
ATCCGCCTGGGTTCCCTCTCAGTCAGGCTAGATAGGAACACTGTGGCCAA
CGCAGAGATATATGCGATCGACGCTGGTCTCCAAGCCAGCTCGGAAGACA
TTAAGGTCAACATAGGCGAGCATGTACTGCGTGGTCTTTTCCGAAACTGG
GTCACTGAGTACAAGCGAATTAATGCAGTTGATGAAGACGGTGGGTATCT
ACAAGGTCGAAGCCCTCCAACTCAGGCACAAAGGGCTGCAGCCTCACGAG
CCGCAGAACTACCTGAATATCGTTTTCCGGACCACATTCCAATCATAATT
ACTGAAGATCGATCACCTCTCCCCATTTTGCGGAAAACGGTATCTGGATT
CTCGGGCACAGAGGAAGATTTACTGCCTTCATGGGTGATTGATTTGGTTA
GAGACGGTAAGAACCAAGTACGAGACGCTGTCAAGCTTAGTTTCACCTTG
GAACCTGCCGAAGGGAGCACGCTTCCACAGCTATCACCAACTTCACTGCA
TGCTGCAAGAGTGTTGCGTGTGCGCAAGGTTATTAGTTACATTGCAAAGG
AATTGAAGGATCTTAGATCAGAGCAAGATATTGAAGTTGAACCGCAAGAC
CTGGAAGTTCTCTGCAATGGTCAGGTACTTTCACCTACAATGAGCCTTGC
CGCCGTAAGACAATTTAGATGGCGATCGCCTGAAGATCTTCAACTTCATT
TCAGACTGAAGGAGACGTAA