Gchil7162.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7162.t1
Unique Name	Gchil7162.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:390586..391869 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_04157T0
Preferred name	U2AF2
PFAMs	RRM_1
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K12837
KEGG Pathway	ko03040,map03040
GOs	GO:0000003,GO:0000243,GO:0000245,GO:0000348,GO:0000375,GO:0000377,GO:0000381,GO:0000389,GO:0000398,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007276,GO:0007281,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009893,GO:0009987,GO:0010171,GO:0010172,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019899,GO:0019904,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030628,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032269,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032991,GO:0033036,GO:0033119,GO:0033120,GO:0034613,GO:0034622,GO:0034641,GO:0036002,GO:0040007,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045131,GO:0045184,GO:0045292,GO:0045934,GO:0045935,GO:0046483,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048024,GO:0048025,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048589,GO:0048598,GO:0048609,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0051704,GO:0060255,GO:0060341,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070742,GO:0071004,GO:0071010,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089701,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1903312,GO:1903320,GO:1903321,GO:1990904
Evalue	1e-15
EggNOG OGs	KOG0120@1\|root,KOG0120@2759\|Eukaryota,38BQ8@33154\|Opisthokonta
Description	pre-mRNA 3'-splice site binding
COG category	A
BRITE	ko00000,ko00001,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7162	Gchil7162	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 390586..391869 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7162.t1.stop1	Gchil7162.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 390586..390588 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7162.t1.CDS1	Gchil7162.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 390586..391869 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7162.t1.exon1	Gchil7162.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 390586..391869 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7162.t1.start1	Gchil7162.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 391867..391869 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7162.t1	Gchil7162.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 390586..391869 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:390586..391869-
coding sequence from alignment at tig00004441_pilon:390586..391869-

mRNA sequence

>Gchil7162.t1 ID=Gchil7162.t1|Name=Gchil7162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=428bp
MHAASPPRSSARSRRTGGSSHESDRKRARVERLSPNAVPRRSPSHRDRAW
ERGDGYGSYSNPSHPRRASHENALQNGSPYGARPAPPALSMQPPLPNTSK
SRRLYIGNVPYHVGLTDVALTQFFSALYIAGFGPNRPAQPLPVISFWLHA
DGKFGFMELRGEQEAVNMMQFNGVFLHGRPLRVNRPSDYRPEVHNPSGMN
LVPDVVNVRAVMELCDKLDGIVSAPAQLAAIAASQTSDEQRMPSVVPSHV
KETDPAGNAQRDRTPTTEPNSASRRTPQAHTAQDENLQSAVAKQKETIRS
EAVGNSASNPTTPREQEREYTVISLQNLVTDDDLDGDDEDYEDLVADVQA
ECENYGSVEEVNIPKSGIWKRTAFIQFKKSLEAKNAVEALKKRVFDKRQI
VAIGLPDCNTVAEAAARSGTGSSAMRD*

spliced messenger RNA

>Gchil7162.t1 ID=Gchil7162.t1|Name=Gchil7162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004441_pilon:390586..391869- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCCGCATCACCACCCCGCTCTTCCGCCCGCTCGCGCCGAACCGG
CGGCTCTTCACATGAATCGGACAGAAAGCGCGCGCGCGTGGAACGTTTGT
CCCCAAACGCCGTCCCGCGTCGCAGCCCGTCTCACCGCGACCGTGCGTGG
GAGCGCGGTGACGGCTACGGCTCGTATTCAAACCCGTCGCACCCGCGTCG
CGCAAGCCATGAAAATGCGCTGCAAAACGGCTCGCCCTACGGCGCCAGAC
CGGCCCCGCCGGCGCTGTCTATGCAGCCCCCGTTGCCCAACACCAGCAAG
AGTCGCCGTTTGTACATTGGAAATGTTCCTTACCATGTGGGTCTTACTGA
CGTTGCGCTCACACAGTTCTTTTCTGCGCTTTACATCGCTGGATTTGGAC
CGAATCGACCGGCTCAACCGCTGCCTGTCATCTCGTTTTGGTTGCATGCG
GACGGTAAGTTTGGCTTCATGGAGCTTCGAGGCGAACAGGAGGCCGTCAA
CATGATGCAGTTCAACGGCGTCTTTCTGCACGGCAGACCGCTCAGGGTGA
ATCGCCCATCCGACTACAGGCCTGAGGTGCATAACCCCTCTGGAATGAAC
CTCGTCCCTGACGTTGTCAATGTGCGCGCTGTTATGGAGCTCTGTGACAA
GTTGGACGGCATCGTCTCCGCCCCAGCTCAATTGGCCGCCATCGCCGCCT
CTCAAACCTCTGATGAGCAACGAATGCCGTCGGTCGTGCCCTCGCACGTG
AAAGAAACTGACCCTGCTGGAAACGCACAACGCGATCGCACGCCCACTAC
GGAACCGAACTCGGCTTCACGGCGCACGCCACAAGCACACACGGCCCAAG
ATGAAAATCTTCAAAGTGCAGTTGCCAAACAAAAAGAAACTATTCGCTCC
GAAGCAGTGGGCAACAGCGCTTCCAACCCCACTACGCCCAGGGAACAAGA
AAGAGAATACACAGTTATATCTCTTCAAAACCTAGTCACGGACGACGACT
TGGACGGCGACGACGAAGACTACGAAGATCTTGTCGCTGACGTCCAGGCC
GAATGCGAGAATTATGGATCAGTGGAGGAGGTTAATATCCCGAAAAGCGG
CATTTGGAAGAGGACCGCTTTCATTCAATTCAAAAAGAGTTTGGAGGCAA
AGAATGCGGTCGAGGCGCTCAAGAAGCGAGTGTTTGACAAGCGTCAGATC
GTTGCGATTGGTTTGCCAGACTGCAACACGGTCGCCGAAGCGGCCGCTCG
ATCAGGTACAGGATCTAGCGCCATGCGCGACTAA

protein sequence of Gchil7162.t1

>Gchil7162.t1 ID=Gchil7162.t1|Name=Gchil7162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=428bp
MHAASPPRSSARSRRTGGSSHESDRKRARVERLSPNAVPRRSPSHRDRAW
ERGDGYGSYSNPSHPRRASHENALQNGSPYGARPAPPALSMQPPLPNTSK
SRRLYIGNVPYHVGLTDVALTQFFSALYIAGFGPNRPAQPLPVISFWLHA
DGKFGFMELRGEQEAVNMMQFNGVFLHGRPLRVNRPSDYRPEVHNPSGMN
LVPDVVNVRAVMELCDKLDGIVSAPAQLAAIAASQTSDEQRMPSVVPSHV
KETDPAGNAQRDRTPTTEPNSASRRTPQAHTAQDENLQSAVAKQKETIRS
EAVGNSASNPTTPREQEREYTVISLQNLVTDDDLDGDDEDYEDLVADVQA
ECENYGSVEEVNIPKSGIWKRTAFIQFKKSLEAKNAVEALKKRVFDKRQI
VAIGLPDCNTVAEAAARSGTGSSAMRD*

mRNA from alignment at tig00004441_pilon:390586..391869-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7162.t1 ID=Gchil7162.t1|Name=Gchil7162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004441_pilon:390586..391869- (Gracilaria chilensis NLEC103_M9 male)
ATGCATGCCGCATCACCACCCCGCTCTTCCGCCCGCTCGCGCCGAACCGG
CGGCTCTTCACATGAATCGGACAGAAAGCGCGCGCGCGTGGAACGTTTGT
CCCCAAACGCCGTCCCGCGTCGCAGCCCGTCTCACCGCGACCGTGCGTGG
GAGCGCGGTGACGGCTACGGCTCGTATTCAAACCCGTCGCACCCGCGTCG
CGCAAGCCATGAAAATGCGCTGCAAAACGGCTCGCCCTACGGCGCCAGAC
CGGCCCCGCCGGCGCTGTCTATGCAGCCCCCGTTGCCCAACACCAGCAAG
AGTCGCCGTTTGTACATTGGAAATGTTCCTTACCATGTGGGTCTTACTGA
CGTTGCGCTCACACAGTTCTTTTCTGCGCTTTACATCGCTGGATTTGGAC
CGAATCGACCGGCTCAACCGCTGCCTGTCATCTCGTTTTGGTTGCATGCG
GACGGTAAGTTTGGCTTCATGGAGCTTCGAGGCGAACAGGAGGCCGTCAA
CATGATGCAGTTCAACGGCGTCTTTCTGCACGGCAGACCGCTCAGGGTGA
ATCGCCCATCCGACTACAGGCCTGAGGTGCATAACCCCTCTGGAATGAAC
CTCGTCCCTGACGTTGTCAATGTGCGCGCTGTTATGGAGCTCTGTGACAA
GTTGGACGGCATCGTCTCCGCCCCAGCTCAATTGGCCGCCATCGCCGCCT
CTCAAACCTCTGATGAGCAACGAATGCCGTCGGTCGTGCCCTCGCACGTG
AAAGAAACTGACCCTGCTGGAAACGCACAACGCGATCGCACGCCCACTAC
GGAACCGAACTCGGCTTCACGGCGCACGCCACAAGCACACACGGCCCAAG
ATGAAAATCTTCAAAGTGCAGTTGCCAAACAAAAAGAAACTATTCGCTCC
GAAGCAGTGGGCAACAGCGCTTCCAACCCCACTACGCCCAGGGAACAAGA
AAGAGAATACACAGTTATATCTCTTCAAAACCTAGTCACGGACGACGACT
TGGACGGCGACGACGAAGACTACGAAGATCTTGTCGCTGACGTCCAGGCC
GAATGCGAGAATTATGGATCAGTGGAGGAGGTTAATATCCCGAAAAGCGG
CATTTGGAAGAGGACCGCTTTCATTCAATTCAAAAAGAGTTTGGAGGCAA
AGAATGCGGTCGAGGCGCTCAAGAAGCGAGTGTTTGACAAGCGTCAGATC
GTTGCGATTGGTTTGCCAGACTGCAACACGGTCGCCGAAGCGGCCGCTCG
ATCAGGTACAGGATCTAGCGCCATGCGCGACTAA

Coding sequence (CDS) from alignment at tig00004441_pilon:390586..391869-

>Gchil7162.t1 ID=Gchil7162.t1|Name=Gchil7162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00004441_pilon:390586..391869- (Gracilaria chilensis NLEC103_M9 male)
ATGCATGCCGCATCACCACCCCGCTCTTCCGCCCGCTCGCGCCGAACCGG
CGGCTCTTCACATGAATCGGACAGAAAGCGCGCGCGCGTGGAACGTTTGT
CCCCAAACGCCGTCCCGCGTCGCAGCCCGTCTCACCGCGACCGTGCGTGG
GAGCGCGGTGACGGCTACGGCTCGTATTCAAACCCGTCGCACCCGCGTCG
CGCAAGCCATGAAAATGCGCTGCAAAACGGCTCGCCCTACGGCGCCAGAC
CGGCCCCGCCGGCGCTGTCTATGCAGCCCCCGTTGCCCAACACCAGCAAG
AGTCGCCGTTTGTACATTGGAAATGTTCCTTACCATGTGGGTCTTACTGA
CGTTGCGCTCACACAGTTCTTTTCTGCGCTTTACATCGCTGGATTTGGAC
CGAATCGACCGGCTCAACCGCTGCCTGTCATCTCGTTTTGGTTGCATGCG
GACGGTAAGTTTGGCTTCATGGAGCTTCGAGGCGAACAGGAGGCCGTCAA
CATGATGCAGTTCAACGGCGTCTTTCTGCACGGCAGACCGCTCAGGGTGA
ATCGCCCATCCGACTACAGGCCTGAGGTGCATAACCCCTCTGGAATGAAC
CTCGTCCCTGACGTTGTCAATGTGCGCGCTGTTATGGAGCTCTGTGACAA
GTTGGACGGCATCGTCTCCGCCCCAGCTCAATTGGCCGCCATCGCCGCCT
CTCAAACCTCTGATGAGCAACGAATGCCGTCGGTCGTGCCCTCGCACGTG
AAAGAAACTGACCCTGCTGGAAACGCACAACGCGATCGCACGCCCACTAC
GGAACCGAACTCGGCTTCACGGCGCACGCCACAAGCACACACGGCCCAAG
ATGAAAATCTTCAAAGTGCAGTTGCCAAACAAAAAGAAACTATTCGCTCC
GAAGCAGTGGGCAACAGCGCTTCCAACCCCACTACGCCCAGGGAACAAGA
AAGAGAATACACAGTTATATCTCTTCAAAACCTAGTCACGGACGACGACT
TGGACGGCGACGACGAAGACTACGAAGATCTTGTCGCTGACGTCCAGGCC
GAATGCGAGAATTATGGATCAGTGGAGGAGGTTAATATCCCGAAAAGCGG
CATTTGGAAGAGGACCGCTTTCATTCAATTCAAAAAGAGTTTGGAGGCAA
AGAATGCGGTCGAGGCGCTCAAGAAGCGAGTGTTTGACAAGCGTCAGATC
GTTGCGATTGGTTTGCCAGACTGCAACACGGTCGCCGAAGCGGCCGCTCG
ATCAGGTACAGGATCTAGCGCCATGCGCGACTAA