Gchil7161.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7161.t1
Unique NameGchil7161.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:388827..390264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7161Gchil7161Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 388827..390264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7161.t1Gchil7161.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 388827..390264 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7161.t1.start1Gchil7161.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 388827..388829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7161.t1.CDS1Gchil7161.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 388827..388937 +
Gchil7161.t1.CDS2Gchil7161.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 389018..389404 +
Gchil7161.t1.CDS3Gchil7161.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 389502..389551 +
Gchil7161.t1.CDS4Gchil7161.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 389703..390264 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7161.t1.exon1Gchil7161.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 388827..388937 +
Gchil7161.t1.exon2Gchil7161.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 389018..389404 +
Gchil7161.t1.exon3Gchil7161.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 389502..389551 +
Gchil7161.t1.exon4Gchil7161.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 389703..390264 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7161.t1.intron1Gchil7161.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 388938..389017 +
Gchil7161.t1.intron2Gchil7161.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 389405..389501 +
Gchil7161.t1.intron3Gchil7161.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 389552..389702 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7161.t1.stop1Gchil7161.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 390262..390264 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7161.t1 ID=Gchil7161.t1|Name=Gchil7161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=370bp
MKPARDFSLPSDTFLPPSTYDPLRHATQDFFWYHIEPYFHPVCSDQLAVL
QPTNAPTPTLQLPTEQHSSSSRSTHHTLQPATLTSVAAFPLCHRLTAALL
DDGKGQPVASKPLRSAVSAESTWLGPSPQMLDHYNCAMEQRIRHQLLHLG
LLDNQQNDTLLSHLRLEHWRLQNLNSANAALQTRALTKVTPFLKSQASFR
KQKITDNFTEIKYLETMGEKCGKRAKGRFNKLLNQMHPNRHLKPGDPINQ
PNKTTHNSAVTDKPISKKRKRKAPTVDKPPHKQQHVEKNASSSADSSDIL
APHIASIIWKHNNHASIDDIVSDLVETVPNLTIDVKEARRRITKCLSFSR
KPYRFRKTPNGLTYSAAKL*
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spliced messenger RNA

>Gchil7161.t1 ID=Gchil7161.t1|Name=Gchil7161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00004441_pilon:388827..390264+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCTGCGCGCGACTTTTCTCTGCCGTCAGACACTTTTCTGCCGCC
CAGTACGTACGACCCGCTGCGCCACGCCACTCAAGATTTTTTCTGGTATC
ACATCGAGCCCTACTTTCATCCAGTGTGTTCCGACCAGCTCGCCGTTCTT
CAGCCCACAAACGCGCCCACACCCACGCTGCAACTTCCCACCGAGCAGCA
TTCCTCCTCGTCGCGCTCCACGCACCACACGCTGCAACCCGCTACTCTCA
CCTCCGTCGCCGCCTTTCCTCTCTGCCACAGGCTCACCGCCGCCCTGCTG
GACGACGGCAAGGGCCAGCCCGTCGCCTCCAAACCGCTGCGCTCCGCCGT
CTCCGCCGAGTCCACCTGGCTGGGGCCCTCTCCCCAAATGCTCGACCACT
ACAACTGCGCTATGGAGCAGCGCATACGCCACCAGCTTTTACACTTGGGT
TTGCTAGATAACCAACAAAACGATACGCTACTCTCTCATCTACGACTCGA
GCACTGGCGCCTGCAAAACCTAAACTCCGCCAATGCTGCCCTTCAAACTC
GAGCACTCACCAAAGTAACTCCTTTTCTCAAATCGCAGGCTTCGTTCCGC
AAACAAAAAATAACAGACAACTTCACCGAGATCAAATACCTTGAGACTAT
GGGCGAAAAGTGCGGCAAACGAGCAAAGGGTCGTTTCAACAAGCTGCTCA
ATCAGATGCACCCAAACAGACATCTAAAGCCGGGTGACCCAATCAATCAG
CCAAACAAAACCACCCACAACTCGGCCGTCACCGACAAGCCCATTTCGAA
GAAGCGCAAGAGAAAAGCCCCGACCGTCGACAAGCCCCCCCACAAACAGC
AACACGTGGAAAAGAACGCCTCCTCCTCAGCCGATTCATCCGACATTCTC
GCTCCGCACATTGCCTCCATCATCTGGAAACACAATAATCACGCATCAAT
TGACGACATTGTCAGTGATCTCGTGGAAACAGTTCCCAATCTAACCATTG
ATGTCAAGGAAGCCAGGCGTCGAATAACCAAATGTCTTTCCTTCTCCAGA
AAACCATATCGCTTCCGGAAGACACCAAACGGTCTCACTTACTCTGCCGC
AAAGCTTTGA
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protein sequence of Gchil7161.t1

>Gchil7161.t1 ID=Gchil7161.t1|Name=Gchil7161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MKPARDFSLPSDTFLPPSTYDPLRHATQDFFWYHIEPYFHPVCSDQLAVL
QPTNAPTPTLQLPTEQHSSSSRSTHHTLQPATLTSVAAFPLCHRLTAALL
DDGKGQPVASKPLRSAVSAESTWLGPSPQMLDHYNCAMEQRIRHQLLHLG
LLDNQQNDTLLSHLRLEHWRLQNLNSANAALQTRALTKVTPFLKSQASFR
KQKITDNFTEIKYLETMGEKCGKRAKGRFNKLLNQMHPNRHLKPGDPINQ
PNKTTHNSAVTDKPISKKRKRKAPTVDKPPHKQQHVEKNASSSADSSDIL
APHIASIIWKHNNHASIDDIVSDLVETVPNLTIDVKEARRRITKCLSFSR
KPYRFRKTPNGLTYSAAKL*
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mRNA from alignment at tig00004441_pilon:388827..390264+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7161.t1 ID=Gchil7161.t1|Name=Gchil7161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1438bp|location=Sequence derived from alignment at tig00004441_pilon:388827..390264+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCTGCGCGCGACTTTTCTCTGCCGTCAGACACTTTTCTGCCGCC
CAGTACGTACGACCCGCTGCGCCACGCCACTCAAGATTTTTTCTGGTATC
ACATCGAGCCCGTACGTCCCGCACCTCCGCCGCGCGCGCTGTTTCCATGC
CACACGCCGCCACGTCACTCACCGCGTCCCGCTCTCCCCAGTACTTTCAT
CCAGTGTGTTCCGACCAGCTCGCCGTTCTTCAGCCCACAAACGCGCCCAC
ACCCACGCTGCAACTTCCCACCGAGCAGCATTCCTCCTCGTCGCGCTCCA
CGCACCACACGCTGCAACCCGCTACTCTCACCTCCGTCGCCGCCTTTCCT
CTCTGCCACAGGCTCACCGCCGCCCTGCTGGACGACGGCAAGGGCCAGCC
CGTCGCCTCCAAACCGCTGCGCTCCGCCGTCTCCGCCGAGTCCACCTGGC
TGGGGCCCTCTCCCCAAATGCTCGACCACTACAACTGCGCTATGGAGCAG
CGCATACGCCACCAGCTTTTACACTTGGGTTTGCTAGATAACCAACAAAA
CGATACGCTACTCTCTCATCTACGACTCGTACGTAACTGCATTTTTCTTG
CTCTCCGTATTCTAAACTTCTCTTCTTCTCTAACCccgcctccgcctccg
ctctctccccgtcctccTTCAATAGGAGCACTGGCGCCTGCAAAACCTAA
ACTCCGCCAATGCTGCCCTTCAAACGTACGTCGCGCACATTAAAAAGCGC
CTTCTCCACTTCGTCTGCTGCATCTTACCTGACACCATGCATCTTCTTCA
CCACACGCTACCaaaaaaaaaataacaaaaacaaaacaaaaacaaaacaa
aaaaaaCCTCTTCACCTCACGCACAGTCGAGCACTCACCAAAGTAACTCC
TTTTCTCAAATCGCAGGCTTCGTTCCGCAAACAAAAAATAACAGACAACT
TCACCGAGATCAAATACCTTGAGACTATGGGCGAAAAGTGCGGCAAACGA
GCAAAGGGTCGTTTCAACAAGCTGCTCAATCAGATGCACCCAAACAGACA
TCTAAAGCCGGGTGACCCAATCAATCAGCCAAACAAAACCACCCACAACT
CGGCCGTCACCGACAAGCCCATTTCGAAGAAGCGCAAGAGAAAAGCCCCG
ACCGTCGACAAGCCCCCCCACAAACAGCAACACGTGGAAAAGAACGCCTC
CTCCTCAGCCGATTCATCCGACATTCTCGCTCCGCACATTGCCTCCATCA
TCTGGAAACACAATAATCACGCATCAATTGACGACATTGTCAGTGATCTC
GTGGAAACAGTTCCCAATCTAACCATTGATGTCAAGGAAGCCAGGCGTCG
AATAACCAAATGTCTTTCCTTCTCCAGAAAACCATATCGCTTCCGGAAGA
CACCAAACGGTCTCACTTACTCTGCCGCAAAGCTTTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:388827..390264+

>Gchil7161.t1 ID=Gchil7161.t1|Name=Gchil7161.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00004441_pilon:388827..390264+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCTGCGCGCGACTTTTCTCTGCCGTCAGACACTTTTCTGCCGCC
CAGTACGTACGACCCGCTGCGCCACGCCACTCAAGATTTTTTCTGGTATC
ACATCGAGCCCTACTTTCATCCAGTGTGTTCCGACCAGCTCGCCGTTCTT
CAGCCCACAAACGCGCCCACACCCACGCTGCAACTTCCCACCGAGCAGCA
TTCCTCCTCGTCGCGCTCCACGCACCACACGCTGCAACCCGCTACTCTCA
CCTCCGTCGCCGCCTTTCCTCTCTGCCACAGGCTCACCGCCGCCCTGCTG
GACGACGGCAAGGGCCAGCCCGTCGCCTCCAAACCGCTGCGCTCCGCCGT
CTCCGCCGAGTCCACCTGGCTGGGGCCCTCTCCCCAAATGCTCGACCACT
ACAACTGCGCTATGGAGCAGCGCATACGCCACCAGCTTTTACACTTGGGT
TTGCTAGATAACCAACAAAACGATACGCTACTCTCTCATCTACGACTCGA
GCACTGGCGCCTGCAAAACCTAAACTCCGCCAATGCTGCCCTTCAAACTC
GAGCACTCACCAAAGTAACTCCTTTTCTCAAATCGCAGGCTTCGTTCCGC
AAACAAAAAATAACAGACAACTTCACCGAGATCAAATACCTTGAGACTAT
GGGCGAAAAGTGCGGCAAACGAGCAAAGGGTCGTTTCAACAAGCTGCTCA
ATCAGATGCACCCAAACAGACATCTAAAGCCGGGTGACCCAATCAATCAG
CCAAACAAAACCACCCACAACTCGGCCGTCACCGACAAGCCCATTTCGAA
GAAGCGCAAGAGAAAAGCCCCGACCGTCGACAAGCCCCCCCACAAACAGC
AACACGTGGAAAAGAACGCCTCCTCCTCAGCCGATTCATCCGACATTCTC
GCTCCGCACATTGCCTCCATCATCTGGAAACACAATAATCACGCATCAAT
TGACGACATTGTCAGTGATCTCGTGGAAACAGTTCCCAATCTAACCATTG
ATGTCAAGGAAGCCAGGCGTCGAATAACCAAATGTCTTTCCTTCTCCAGA
AAACCATATCGCTTCCGGAAGACACCAAACGGTCTCACTTACTCTGCCGC
AAAGCTTTGA
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