Gchil7157.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7157.t1
Unique NameGchil7157.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:384112..384624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog104355.XP_007869127.1
Preferred nameCYP10
PFAMsPro_isomerase
Max annot lvl4751|Fungi
KEGG koko:K01802,ko:K12734
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Evalue2.14e-47
EggNOG OGsCOG0652@1|root,KOG0884@2759|Eukaryota,3A033@33154|Opisthokonta,3P1VH@4751|Fungi,3V0IJ@5204|Basidiomycota,2257Q@155619|Agaricomycetes,3H1HJ@355688|Agaricomycetes incertae sedis
EC5.2.1.8
DescriptionPPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7157Gchil7157Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 384112..384624 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7157.t1.stop1Gchil7157.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 384112..384114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7157.t1.CDS1Gchil7157.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 384112..384624 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7157.t1.exon1Gchil7157.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 384112..384624 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7157.t1.start1Gchil7157.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 384622..384624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7157.t1Gchil7157.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 384112..384624 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7157.t1 ID=Gchil7157.t1|Name=Gchil7157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=171bp
MSVTLHTDCGDVKVELFCREVPRSAANFLALCAAHRYDNTPFHRVISAFI
VQTGDPTGAGTVSRAAFASRLPDDIHAQLTFARAGVVAFANSGRPSSKGV
GSQFFITLAAAPHLDATCTIVGRVIHGMHAVRAIAAVQCERNRPITPVLL
RSVTIHANPFADGALAYHVR*
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spliced messenger RNA

>Gchil7157.t1 ID=Gchil7157.t1|Name=Gchil7157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004441_pilon:384112..384624- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGTCACGTTGCACACCGACTGCGGCGACGTCAAGGTGGAGCTTTT
CTGCCGCGAGGTACCGCGCTCAGCGGCCAATTTCCTCGCGCTATGCGCGG
CGCATCGCTACGACAATACCCCATTCCACCGCGTCATCTCCGCCTTCATT
GTGCAGACGGGCGATCCCACGGGCGCAGGAACCGTCTCCCGCGCGGCATT
TGCCAGCCGTCTGCCGGATGACATCCACGCGCAGCTCACGTTTGCGCGCG
CCGGCGTGGTCGCCTTTGCAAACTCGGGCCGCCCTAGCTCCAAGGGCGTC
GGCAGTCAGTTCTTCATCACGCTTGCCGCCGCGCCGCACCTGGACGCCAC
CTGTACCATTGTGGGCCGCGTCATCCACGGAATGCATGCTGTGCGCGCCA
TCGCCGCCGTGCAGTGCGAGCGAAATCGCCCCATCACGCCCGTGCTGCTG
CGCTCCGTCACCATCCACGCCAACCCGTTTGCAGATGGCGCGCTTGCGTA
CCACGTCAGGTGA
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protein sequence of Gchil7157.t1

>Gchil7157.t1 ID=Gchil7157.t1|Name=Gchil7157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=171bp
MSVTLHTDCGDVKVELFCREVPRSAANFLALCAAHRYDNTPFHRVISAFI
VQTGDPTGAGTVSRAAFASRLPDDIHAQLTFARAGVVAFANSGRPSSKGV
GSQFFITLAAAPHLDATCTIVGRVIHGMHAVRAIAAVQCERNRPITPVLL
RSVTIHANPFADGALAYHVR*
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mRNA from alignment at tig00004441_pilon:384112..384624-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7157.t1 ID=Gchil7157.t1|Name=Gchil7157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004441_pilon:384112..384624- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGTCACGTTGCACACCGACTGCGGCGACGTCAAGGTGGAGCTTTT
CTGCCGCGAGGTACCGCGCTCAGCGGCCAATTTCCTCGCGCTATGCGCGG
CGCATCGCTACGACAATACCCCATTCCACCGCGTCATCTCCGCCTTCATT
GTGCAGACGGGCGATCCCACGGGCGCAGGAACCGTCTCCCGCGCGGCATT
TGCCAGCCGTCTGCCGGATGACATCCACGCGCAGCTCACGTTTGCGCGCG
CCGGCGTGGTCGCCTTTGCAAACTCGGGCCGCCCTAGCTCCAAGGGCGTC
GGCAGTCAGTTCTTCATCACGCTTGCCGCCGCGCCGCACCTGGACGCCAC
CTGTACCATTGTGGGCCGCGTCATCCACGGAATGCATGCTGTGCGCGCCA
TCGCCGCCGTGCAGTGCGAGCGAAATCGCCCCATCACGCCCGTGCTGCTG
CGCTCCGTCACCATCCACGCCAACCCGTTTGCAGATGGCGCGCTTGCGTA
CCACGTCAGGTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:384112..384624-

>Gchil7157.t1 ID=Gchil7157.t1|Name=Gchil7157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00004441_pilon:384112..384624- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGTCACGTTGCACACCGACTGCGGCGACGTCAAGGTGGAGCTTTT
CTGCCGCGAGGTACCGCGCTCAGCGGCCAATTTCCTCGCGCTATGCGCGG
CGCATCGCTACGACAATACCCCATTCCACCGCGTCATCTCCGCCTTCATT
GTGCAGACGGGCGATCCCACGGGCGCAGGAACCGTCTCCCGCGCGGCATT
TGCCAGCCGTCTGCCGGATGACATCCACGCGCAGCTCACGTTTGCGCGCG
CCGGCGTGGTCGCCTTTGCAAACTCGGGCCGCCCTAGCTCCAAGGGCGTC
GGCAGTCAGTTCTTCATCACGCTTGCCGCCGCGCCGCACCTGGACGCCAC
CTGTACCATTGTGGGCCGCGTCATCCACGGAATGCATGCTGTGCGCGCCA
TCGCCGCCGTGCAGTGCGAGCGAAATCGCCCCATCACGCCCGTGCTGCTG
CGCTCCGTCACCATCCACGCCAACCCGTTTGCAGATGGCGCGCTTGCGTA
CCACGTCAGGTGA
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