Gchil7156.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7156.t1
Unique NameGchil7156.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:383120..383872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog59894.ENSFALP00000012497
Preferred nameCYB561A3
PFAMsCytochrom_B561
Max annot lvl33208|Metazoa
KEGG koko:K16295
KEGG TC5.B.2.1
GOsGO:0000323,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0008150,GO:0008152,GO:0010008,GO:0012505,GO:0016020,GO:0016491,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0097708,GO:0098588,GO:0098805,GO:0098852
Evalue7.15e-14
EggNOG OGsKOG1619@1|root,KOG1619@2759|Eukaryota,38W3K@33154|Opisthokonta,3BHQX@33208|Metazoa,3CX2C@33213|Bilateria,48ATP@7711|Chordata,4921N@7742|Vertebrata,4GM4X@8782|Aves
DescriptionCytochrome b ascorbate-dependent protein
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7156Gchil7156Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 383120..383872 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7156.t1.stop1Gchil7156.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 383120..383122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7156.t1.CDS1Gchil7156.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 383120..383872 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7156.t1.exon1Gchil7156.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 383120..383872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7156.t1.start1Gchil7156.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 383870..383872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7156.t1Gchil7156.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 383120..383872 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7156.t1 ID=Gchil7156.t1|Name=Gchil7156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=251bp
MAIAAASRAPCALLAASYATFILTLLWTLLALGGLATTGSRLFNWHPILA
SGAVLAVLTPGVLVQPAPRGSGATRDWRVRAVHAFCLLVAFVVLSVAVAV
AYSSHLQQNKPNLYSLHSWLGLGTLFLMKGNIVAGLTSTLCAQWKAAALV
GKSHRLGGMLVCLMAFVSATVGFAELQTKLARNAGSVWQLRVVAAAILGF
ATMCVGIAVVALLGSREHDRRVEELLGAERVRNKIGDHAYALDTGKTESA
*
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spliced messenger RNA

>Gchil7156.t1 ID=Gchil7156.t1|Name=Gchil7156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004441_pilon:383120..383872- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATCGCCGCAGCCTCGCGTGCACCATGCGCCTTGCTAGCCGCCTC
GTACGCCACCTTCATTCTCACGCTGTTGTGGACGCTTCTGGCGCTCGGAG
GCCTGGCCACCACCGGCTCGCGCCTGTTCAACTGGCACCCCATCCTGGCC
TCCGGTGCAGTGCTTGCCGTTCTGACGCCCGGTGTGTTGGTGCAACCAGC
GCCTCGCGGAAGCGGCGCAACGCGTGACTGGCGAGTCAGGGCCGTGCACG
CCTTCTGTCTGCTTGTGGCGTTTGTGGTCCTCTCCGTCGCCGTCGCCGTC
GCGTATTCAAGCCATTTGCAGCAAAACAAGCCCAACTTGTATTCGCTGCA
TAGCTGGCTGGGGCTCGGCACTCTGTTTCTTATGAAGGGTAACATCGTGG
CAGGTTTGACGTCCACGCTGTGCGCCCAATGGAAGGCAGCTGCTCTGGTG
GGCAAGTCTCACCGCCTGGGCGGCATGTTGGTTTGTTTGATGGCGTTTGT
TAGTGCCACTGTCGGGTTTGCCGAGTTGCAAACGAAGCTGGCGCGCAACG
CCGGCAGCGTGTGGCAGTTGAGAGTTGTGGCCGCTGCCATTTTGGGCTTT
GCCACCATGTGTGTTGGCATCGCAGTTGTCGCGCTGCTCGGAAGCAGGGA
ACATGACAGACGCGTTGAGGAGCTTTTGGGTGCAGAACGCGTGCGGAACA
AGATTGGCGACCATGCGTACGCGCTCGATACAGGGAAGACCGAGTCTGCT
TAG
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protein sequence of Gchil7156.t1

>Gchil7156.t1 ID=Gchil7156.t1|Name=Gchil7156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=251bp
MAIAAASRAPCALLAASYATFILTLLWTLLALGGLATTGSRLFNWHPILA
SGAVLAVLTPGVLVQPAPRGSGATRDWRVRAVHAFCLLVAFVVLSVAVAV
AYSSHLQQNKPNLYSLHSWLGLGTLFLMKGNIVAGLTSTLCAQWKAAALV
GKSHRLGGMLVCLMAFVSATVGFAELQTKLARNAGSVWQLRVVAAAILGF
ATMCVGIAVVALLGSREHDRRVEELLGAERVRNKIGDHAYALDTGKTESA
*
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mRNA from alignment at tig00004441_pilon:383120..383872-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7156.t1 ID=Gchil7156.t1|Name=Gchil7156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004441_pilon:383120..383872- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAATCGCCGCAGCCTCGCGTGCACCATGCGCCTTGCTAGCCGCCTC
GTACGCCACCTTCATTCTCACGCTGTTGTGGACGCTTCTGGCGCTCGGAG
GCCTGGCCACCACCGGCTCGCGCCTGTTCAACTGGCACCCCATCCTGGCC
TCCGGTGCAGTGCTTGCCGTTCTGACGCCCGGTGTGTTGGTGCAACCAGC
GCCTCGCGGAAGCGGCGCAACGCGTGACTGGCGAGTCAGGGCCGTGCACG
CCTTCTGTCTGCTTGTGGCGTTTGTGGTCCTCTCCGTCGCCGTCGCCGTC
GCGTATTCAAGCCATTTGCAGCAAAACAAGCCCAACTTGTATTCGCTGCA
TAGCTGGCTGGGGCTCGGCACTCTGTTTCTTATGAAGGGTAACATCGTGG
CAGGTTTGACGTCCACGCTGTGCGCCCAATGGAAGGCAGCTGCTCTGGTG
GGCAAGTCTCACCGCCTGGGCGGCATGTTGGTTTGTTTGATGGCGTTTGT
TAGTGCCACTGTCGGGTTTGCCGAGTTGCAAACGAAGCTGGCGCGCAACG
CCGGCAGCGTGTGGCAGTTGAGAGTTGTGGCCGCTGCCATTTTGGGCTTT
GCCACCATGTGTGTTGGCATCGCAGTTGTCGCGCTGCTCGGAAGCAGGGA
ACATGACAGACGCGTTGAGGAGCTTTTGGGTGCAGAACGCGTGCGGAACA
AGATTGGCGACCATGCGTACGCGCTCGATACAGGGAAGACCGAGTCTGCT
TAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:383120..383872-

>Gchil7156.t1 ID=Gchil7156.t1|Name=Gchil7156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00004441_pilon:383120..383872- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAATCGCCGCAGCCTCGCGTGCACCATGCGCCTTGCTAGCCGCCTC
GTACGCCACCTTCATTCTCACGCTGTTGTGGACGCTTCTGGCGCTCGGAG
GCCTGGCCACCACCGGCTCGCGCCTGTTCAACTGGCACCCCATCCTGGCC
TCCGGTGCAGTGCTTGCCGTTCTGACGCCCGGTGTGTTGGTGCAACCAGC
GCCTCGCGGAAGCGGCGCAACGCGTGACTGGCGAGTCAGGGCCGTGCACG
CCTTCTGTCTGCTTGTGGCGTTTGTGGTCCTCTCCGTCGCCGTCGCCGTC
GCGTATTCAAGCCATTTGCAGCAAAACAAGCCCAACTTGTATTCGCTGCA
TAGCTGGCTGGGGCTCGGCACTCTGTTTCTTATGAAGGGTAACATCGTGG
CAGGTTTGACGTCCACGCTGTGCGCCCAATGGAAGGCAGCTGCTCTGGTG
GGCAAGTCTCACCGCCTGGGCGGCATGTTGGTTTGTTTGATGGCGTTTGT
TAGTGCCACTGTCGGGTTTGCCGAGTTGCAAACGAAGCTGGCGCGCAACG
CCGGCAGCGTGTGGCAGTTGAGAGTTGTGGCCGCTGCCATTTTGGGCTTT
GCCACCATGTGTGTTGGCATCGCAGTTGTCGCGCTGCTCGGAAGCAGGGA
ACATGACAGACGCGTTGAGGAGCTTTTGGGTGCAGAACGCGTGCGGAACA
AGATTGGCGACCATGCGTACGCGCTCGATACAGGGAAGACCGAGTCTGCT
TAG
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