Gchil7155.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7155.t1
Unique NameGchil7155.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:381831..382799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3988.XP_002521784.1
PFAMsLON_substr_bdg
Max annot lvl35493|Streptophyta
Evalue1.16e-16
EggNOG OGs2D0M0@1|root,2SEMC@2759|Eukaryota,38A5K@33090|Viridiplantae,3GXQV@35493|Streptophyta
DescriptionATP-dependent protease La (LON) substrate-binding domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7155Gchil7155Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 381831..382799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7155.t1.stop1Gchil7155.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 381831..381833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7155.t1.CDS1Gchil7155.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 381831..382799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7155.t1.exon1Gchil7155.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 381831..382799 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7155.t1.start1Gchil7155.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 382797..382799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7155.t1Gchil7155.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 381831..382799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7155.t1 ID=Gchil7155.t1|Name=Gchil7155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=323bp
MCTDYRATEFPQQQPSDDAHSMRAAPVRIDWDRWLSSTAVGNFPALPFPP
DQVFMPGEVKQLHLFEARYLALFETVVLRYEKRCAHVLIDAQRSAMAAIG
TVISVRNWKRLDVGVSVHVEAVARLRTSRLISSSPFLRGEFENVQDHSLS
EAQLIAARLLEVRFWHAFRAVVSLSLQIGIDPIRQIHTASQTMQMSNKIP
QPTQLSNHLLRDHDVTPEAVKPPTFEGKKQFYESKLKHAASRAINYTAID
FVSQITDDQMLARRLQGLSFAGWDYFPSGPALRQKAIEERNTLARFTTVV
HQLEDYSRRLAAQLALQRAFPA*
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spliced messenger RNA

>Gchil7155.t1 ID=Gchil7155.t1|Name=Gchil7155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00004441_pilon:381831..382799- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACCGACTATCGCGCTACCGAATTCCCGCAGCAGCAGCCCTCGGA
CGATGCGCACTCCATGCGCGCCGCGCCCGTTCGCATCGACTGGGACCGCT
GGCTCAGCTCGACCGCTGTTGGCAACTTTCCCGCCCTTCCTTTCCCCCCG
GATCAGGTGTTCATGCCTGGCGAAGTGAAGCAATTGCATCTGTTTGAAGC
GCGCTACCTGGCCTTGTTCGAGACCGTTGTGTTGCGATATGAAAAGCGTT
GCGCTCATGTGCTTATCGACGCACAACGCAGCGCTATGGCTGCGATTGGC
ACTGTCATTTCGGTGCGTAATTGGAAACGTTTAGATGTTGGTGTGAGTGT
GCATGTGGAAGCTGTGGCGCGCTTGAGGACGTCGCGTCTCATCTCTTCGT
CTCCGTTCTTGCGAGGCGAGTTTGAGAACGTTCAAGACCATTCCCTGTCG
GAAGCTCAACTCATAGCAGCGCGCCTTTTGGAGGTGCGTTTCTGGCACGC
CTTTCGAGCCGTTGTGTCTCTGTCGTTGCAAATTGGTATCGACCCCATTC
GACAGATTCACACCGCATCTCAAACCATGCAAATGTCCAACAAAATACCA
CAACCGACGCAGCTTTCCAACCACTTGCTTCGTGACCATGACGTCACACC
CGAGGCAGTCAAGCCGCCCACTTTTGAGGGTAAGAAGCAGTTTTACGAAA
GCAAGCTGAAGCATGCTGCCTCGCGCGCCATTAACTATACTGCTATAGAT
TTTGTTTCTCAAATTACCGACGACCAGATGCTCGCTCGTCGACTTCAAGG
CTTGTCATTTGCGGGCTGGGACTACTTTCCTTCTGGCCCTGCCTTGCGTC
AGAAGGCCATCGAAGAGCGCAACACATTAGCTCGTTTCACCACAGTCGTC
CATCAACTTGAGGATTATAGTAGAAGATTAGCGGCACAGCTTGCATTGCA
ACGAGCATTTCCTGCCTAG
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protein sequence of Gchil7155.t1

>Gchil7155.t1 ID=Gchil7155.t1|Name=Gchil7155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=323bp
MCTDYRATEFPQQQPSDDAHSMRAAPVRIDWDRWLSSTAVGNFPALPFPP
DQVFMPGEVKQLHLFEARYLALFETVVLRYEKRCAHVLIDAQRSAMAAIG
TVISVRNWKRLDVGVSVHVEAVARLRTSRLISSSPFLRGEFENVQDHSLS
EAQLIAARLLEVRFWHAFRAVVSLSLQIGIDPIRQIHTASQTMQMSNKIP
QPTQLSNHLLRDHDVTPEAVKPPTFEGKKQFYESKLKHAASRAINYTAID
FVSQITDDQMLARRLQGLSFAGWDYFPSGPALRQKAIEERNTLARFTTVV
HQLEDYSRRLAAQLALQRAFPA*
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mRNA from alignment at tig00004441_pilon:381831..382799-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7155.t1 ID=Gchil7155.t1|Name=Gchil7155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00004441_pilon:381831..382799- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCACCGACTATCGCGCTACCGAATTCCCGCAGCAGCAGCCCTCGGA
CGATGCGCACTCCATGCGCGCCGCGCCCGTTCGCATCGACTGGGACCGCT
GGCTCAGCTCGACCGCTGTTGGCAACTTTCCCGCCCTTCCTTTCCCCCCG
GATCAGGTGTTCATGCCTGGCGAAGTGAAGCAATTGCATCTGTTTGAAGC
GCGCTACCTGGCCTTGTTCGAGACCGTTGTGTTGCGATATGAAAAGCGTT
GCGCTCATGTGCTTATCGACGCACAACGCAGCGCTATGGCTGCGATTGGC
ACTGTCATTTCGGTGCGTAATTGGAAACGTTTAGATGTTGGTGTGAGTGT
GCATGTGGAAGCTGTGGCGCGCTTGAGGACGTCGCGTCTCATCTCTTCGT
CTCCGTTCTTGCGAGGCGAGTTTGAGAACGTTCAAGACCATTCCCTGTCG
GAAGCTCAACTCATAGCAGCGCGCCTTTTGGAGGTGCGTTTCTGGCACGC
CTTTCGAGCCGTTGTGTCTCTGTCGTTGCAAATTGGTATCGACCCCATTC
GACAGATTCACACCGCATCTCAAACCATGCAAATGTCCAACAAAATACCA
CAACCGACGCAGCTTTCCAACCACTTGCTTCGTGACCATGACGTCACACC
CGAGGCAGTCAAGCCGCCCACTTTTGAGGGTAAGAAGCAGTTTTACGAAA
GCAAGCTGAAGCATGCTGCCTCGCGCGCCATTAACTATACTGCTATAGAT
TTTGTTTCTCAAATTACCGACGACCAGATGCTCGCTCGTCGACTTCAAGG
CTTGTCATTTGCGGGCTGGGACTACTTTCCTTCTGGCCCTGCCTTGCGTC
AGAAGGCCATCGAAGAGCGCAACACATTAGCTCGTTTCACCACAGTCGTC
CATCAACTTGAGGATTATAGTAGAAGATTAGCGGCACAGCTTGCATTGCA
ACGAGCATTTCCTGCCTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:381831..382799-

>Gchil7155.t1 ID=Gchil7155.t1|Name=Gchil7155.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00004441_pilon:381831..382799- (Gracilaria chilensis NLEC103_M9 male)
ATGTGCACCGACTATCGCGCTACCGAATTCCCGCAGCAGCAGCCCTCGGA
CGATGCGCACTCCATGCGCGCCGCGCCCGTTCGCATCGACTGGGACCGCT
GGCTCAGCTCGACCGCTGTTGGCAACTTTCCCGCCCTTCCTTTCCCCCCG
GATCAGGTGTTCATGCCTGGCGAAGTGAAGCAATTGCATCTGTTTGAAGC
GCGCTACCTGGCCTTGTTCGAGACCGTTGTGTTGCGATATGAAAAGCGTT
GCGCTCATGTGCTTATCGACGCACAACGCAGCGCTATGGCTGCGATTGGC
ACTGTCATTTCGGTGCGTAATTGGAAACGTTTAGATGTTGGTGTGAGTGT
GCATGTGGAAGCTGTGGCGCGCTTGAGGACGTCGCGTCTCATCTCTTCGT
CTCCGTTCTTGCGAGGCGAGTTTGAGAACGTTCAAGACCATTCCCTGTCG
GAAGCTCAACTCATAGCAGCGCGCCTTTTGGAGGTGCGTTTCTGGCACGC
CTTTCGAGCCGTTGTGTCTCTGTCGTTGCAAATTGGTATCGACCCCATTC
GACAGATTCACACCGCATCTCAAACCATGCAAATGTCCAACAAAATACCA
CAACCGACGCAGCTTTCCAACCACTTGCTTCGTGACCATGACGTCACACC
CGAGGCAGTCAAGCCGCCCACTTTTGAGGGTAAGAAGCAGTTTTACGAAA
GCAAGCTGAAGCATGCTGCCTCGCGCGCCATTAACTATACTGCTATAGAT
TTTGTTTCTCAAATTACCGACGACCAGATGCTCGCTCGTCGACTTCAAGG
CTTGTCATTTGCGGGCTGGGACTACTTTCCTTCTGGCCCTGCCTTGCGTC
AGAAGGCCATCGAAGAGCGCAACACATTAGCTCGTTTCACCACAGTCGTC
CATCAACTTGAGGATTATAGTAGAAGATTAGCGGCACAGCTTGCATTGCA
ACGAGCATTTCCTGCCTAG
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