Gchil7154.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7154.t1
Unique NameGchil7154.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length539
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:378724..380340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7154Gchil7154Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 378724..380340 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7154.t1.stop1Gchil7154.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 378724..378726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7154.t1.CDS1Gchil7154.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 378724..380340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7154.t1.exon1Gchil7154.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 378724..380340 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7154.t1.start1Gchil7154.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 380338..380340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7154.t1Gchil7154.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 378724..380340 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7154.t1 ID=Gchil7154.t1|Name=Gchil7154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=539bp
MPLPPIFAIGGFGGVTLAVTVLIVRRIARKPRKKCEPSQQLITAAKLDNF
STIGDLVKTENFLHSCSSNRLICTSTIKTPEATDSISARSAAIIESHQVT
ASVSLLPKSISTLSSVTYDSKVCVDTYAALLTNDDDDEDGAFDDAKTCTD
DLESEAKNRMRDIPAEHEEIAVPSPTALLLIDNSRSDGDTESGTESGTPL
VHGEYEQNDEQLLQPRSPILRQQTSPVQFEREASEAVSSEPSYFNNSMYD
LDYEAEIDVRMEPENSGVPSIFTENATVSHGVGDNTQYYRSAVLIFSPPR
KSYGAPVSVTAAPLASVPALEDVVTGTPIPATEIRIDTELLDTTNESQQE
QDANEPSISNEQESMDDDSTTTDEESNYIQDTFMNDLPTILREGELDENE
SNDVQRDCNNTQIVSVPRFRQPVSDSHGPILPIVSREKSTLSSPERTDFG
SPAATRPLREKDVEQVRAMTNIDAIEDSEKENAFQSTSTSPERLSRKPWR
SDRLNNVFSRKNSVRRLRIPERIRRRQLRPQKQNTKSL*
back to top

spliced messenger RNA

>Gchil7154.t1 ID=Gchil7154.t1|Name=Gchil7154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00004441_pilon:378724..380340- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTTCCGCCAATTTTCGCTATCGGTGGGTTTGGAGGGGTCACTCT
TGCAGTGACCGTACTTATAGTACGTCGAATAGCACGCAAGCCTCGCAAGA
AATGCGAACCCTCTCAACAGCTTATCACCGCAGCGAAATTGGACAACTTC
TCGACTATTGGCGACCTCGTCAAAACTGAAAATTTTCTTCACAGCTGCAG
TTCCAATCGTCTTATATGTACCTCCACCATCAAGACACCTGAAGCCACTG
ATTCCATCAGTGCAAGATCTGCTGCAATCATTGAGTCACACCAGGTCACA
GCATCAGTTTCTCTCCTGCCCAAATCAATATCAACACTATCGTCTGTGAC
ATATGACAGCAAAGTGTGCGTTGATACCTATGCAGCGCTGTTGACGAATG
ATGACGACGATGAAGATGGTGCCTTCGATGACGCAAAGACGTGCACAGAC
GATCTGGAATCAGAGGCTAAGAATAGAATGAGGGACATTCCGGCTGAGCA
TGAAGAGATCGCAGTTCCAAGTCCAACCGCGTTGCTGCTAATCGACAATT
CTCGCAGTGATGGAGATACAGAATCTGGTACAGAATCTGGTACGCCTCTA
GTCCATGGGGAATACGAGCAAAATGATGAACAGCTTCTTCAGCCCAGGAG
CCCAATTCTTCGGCAACAGACTTCTCCCGTACAGTTCGAACGCGAAGCTT
CCGAAGCAGTGAGTTCTGAGCCATCCTATTTCAATAATTCCATGTATGAT
CTGGACTACGAAGCAGAAATTGATGTTCGCATGGAGCCAGAGAATAGCGG
TGTTCCATCTATTTTCACGGAGAATGCAACTGTGTCACATGGAGTTGGGG
ATAACACCCAGTACTATAGGTCAGCAGTATTGATTTTTAGCCCTCCAAGA
AAATCATATGGAGCCCCAGTATCTGTGACTGCGGCGCCCTTGGCATCTGT
TCCTGCGTTGGAAGATGTAGTCACCGGCACACCAATTCCAGCGACTGAAA
TTAGGATTGATACCGAACTGCTTGACACCACAAACGAAAGCCAGCAAGAA
CAGGATGCGAATGAGCCGAGCATCTCAAACGAACAAGAGAGCATGGACGA
CGATTCAACGACAACGGATGAAGAGAGCAATTATATTCAGGATACGTTCA
TGAACGATCTTCCAACGATTCTCCGAGAAGGAGAACTTGACGAAAATGAA
TCCAATGATGTACAGCGTGATTGTAACAATACACAGATTGTTTCAGTACC
CCGCTTTAGGCAGCCAGTTTCTGACAGTCATGGCCCGATTCTGCCCATAG
TGTCTCGAGAAAAGAGCACGTTATCGTCTCCCGAAAGAACCGACTTCGGA
AGTCCCGCAGCGACTCGGCCATTGCGTGAAAAGGATGTTGAACAGGTGAG
AGCAATGACTAACATTGACGCTATCGAAGACAGCGAGAAGGAAAACGCGT
TTCAAAGCACATCCACGTCCCCCGAGCGTCTCTCAAGAAAGCCGTGGCGT
TCAGACAGGCTCAATAACGTATTTAGCAGAAAGAACAGTGTTAGACGACT
TCGTATTCCCGAGAGAATCCGTAGAAGGCAATTGCGCCCTCAAAAACAAA
ACACGAAGAGTCTTTAG
back to top

protein sequence of Gchil7154.t1

>Gchil7154.t1 ID=Gchil7154.t1|Name=Gchil7154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=539bp
MPLPPIFAIGGFGGVTLAVTVLIVRRIARKPRKKCEPSQQLITAAKLDNF
STIGDLVKTENFLHSCSSNRLICTSTIKTPEATDSISARSAAIIESHQVT
ASVSLLPKSISTLSSVTYDSKVCVDTYAALLTNDDDDEDGAFDDAKTCTD
DLESEAKNRMRDIPAEHEEIAVPSPTALLLIDNSRSDGDTESGTESGTPL
VHGEYEQNDEQLLQPRSPILRQQTSPVQFEREASEAVSSEPSYFNNSMYD
LDYEAEIDVRMEPENSGVPSIFTENATVSHGVGDNTQYYRSAVLIFSPPR
KSYGAPVSVTAAPLASVPALEDVVTGTPIPATEIRIDTELLDTTNESQQE
QDANEPSISNEQESMDDDSTTTDEESNYIQDTFMNDLPTILREGELDENE
SNDVQRDCNNTQIVSVPRFRQPVSDSHGPILPIVSREKSTLSSPERTDFG
SPAATRPLREKDVEQVRAMTNIDAIEDSEKENAFQSTSTSPERLSRKPWR
SDRLNNVFSRKNSVRRLRIPERIRRRQLRPQKQNTKSL*
back to top

mRNA from alignment at tig00004441_pilon:378724..380340-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7154.t1 ID=Gchil7154.t1|Name=Gchil7154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00004441_pilon:378724..380340- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTTCCGCCAATTTTCGCTATCGGTGGGTTTGGAGGGGTCACTCT
TGCAGTGACCGTACTTATAGTACGTCGAATAGCACGCAAGCCTCGCAAGA
AATGCGAACCCTCTCAACAGCTTATCACCGCAGCGAAATTGGACAACTTC
TCGACTATTGGCGACCTCGTCAAAACTGAAAATTTTCTTCACAGCTGCAG
TTCCAATCGTCTTATATGTACCTCCACCATCAAGACACCTGAAGCCACTG
ATTCCATCAGTGCAAGATCTGCTGCAATCATTGAGTCACACCAGGTCACA
GCATCAGTTTCTCTCCTGCCCAAATCAATATCAACACTATCGTCTGTGAC
ATATGACAGCAAAGTGTGCGTTGATACCTATGCAGCGCTGTTGACGAATG
ATGACGACGATGAAGATGGTGCCTTCGATGACGCAAAGACGTGCACAGAC
GATCTGGAATCAGAGGCTAAGAATAGAATGAGGGACATTCCGGCTGAGCA
TGAAGAGATCGCAGTTCCAAGTCCAACCGCGTTGCTGCTAATCGACAATT
CTCGCAGTGATGGAGATACAGAATCTGGTACAGAATCTGGTACGCCTCTA
GTCCATGGGGAATACGAGCAAAATGATGAACAGCTTCTTCAGCCCAGGAG
CCCAATTCTTCGGCAACAGACTTCTCCCGTACAGTTCGAACGCGAAGCTT
CCGAAGCAGTGAGTTCTGAGCCATCCTATTTCAATAATTCCATGTATGAT
CTGGACTACGAAGCAGAAATTGATGTTCGCATGGAGCCAGAGAATAGCGG
TGTTCCATCTATTTTCACGGAGAATGCAACTGTGTCACATGGAGTTGGGG
ATAACACCCAGTACTATAGGTCAGCAGTATTGATTTTTAGCCCTCCAAGA
AAATCATATGGAGCCCCAGTATCTGTGACTGCGGCGCCCTTGGCATCTGT
TCCTGCGTTGGAAGATGTAGTCACCGGCACACCAATTCCAGCGACTGAAA
TTAGGATTGATACCGAACTGCTTGACACCACAAACGAAAGCCAGCAAGAA
CAGGATGCGAATGAGCCGAGCATCTCAAACGAACAAGAGAGCATGGACGA
CGATTCAACGACAACGGATGAAGAGAGCAATTATATTCAGGATACGTTCA
TGAACGATCTTCCAACGATTCTCCGAGAAGGAGAACTTGACGAAAATGAA
TCCAATGATGTACAGCGTGATTGTAACAATACACAGATTGTTTCAGTACC
CCGCTTTAGGCAGCCAGTTTCTGACAGTCATGGCCCGATTCTGCCCATAG
TGTCTCGAGAAAAGAGCACGTTATCGTCTCCCGAAAGAACCGACTTCGGA
AGTCCCGCAGCGACTCGGCCATTGCGTGAAAAGGATGTTGAACAGGTGAG
AGCAATGACTAACATTGACGCTATCGAAGACAGCGAGAAGGAAAACGCGT
TTCAAAGCACATCCACGTCCCCCGAGCGTCTCTCAAGAAAGCCGTGGCGT
TCAGACAGGCTCAATAACGTATTTAGCAGAAAGAACAGTGTTAGACGACT
TCGTATTCCCGAGAGAATCCGTAGAAGGCAATTGCGCCCTCAAAAACAAA
ACACGAAGAGTCTTTAG
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:378724..380340-

>Gchil7154.t1 ID=Gchil7154.t1|Name=Gchil7154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00004441_pilon:378724..380340- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTTCCGCCAATTTTCGCTATCGGTGGGTTTGGAGGGGTCACTCT
TGCAGTGACCGTACTTATAGTACGTCGAATAGCACGCAAGCCTCGCAAGA
AATGCGAACCCTCTCAACAGCTTATCACCGCAGCGAAATTGGACAACTTC
TCGACTATTGGCGACCTCGTCAAAACTGAAAATTTTCTTCACAGCTGCAG
TTCCAATCGTCTTATATGTACCTCCACCATCAAGACACCTGAAGCCACTG
ATTCCATCAGTGCAAGATCTGCTGCAATCATTGAGTCACACCAGGTCACA
GCATCAGTTTCTCTCCTGCCCAAATCAATATCAACACTATCGTCTGTGAC
ATATGACAGCAAAGTGTGCGTTGATACCTATGCAGCGCTGTTGACGAATG
ATGACGACGATGAAGATGGTGCCTTCGATGACGCAAAGACGTGCACAGAC
GATCTGGAATCAGAGGCTAAGAATAGAATGAGGGACATTCCGGCTGAGCA
TGAAGAGATCGCAGTTCCAAGTCCAACCGCGTTGCTGCTAATCGACAATT
CTCGCAGTGATGGAGATACAGAATCTGGTACAGAATCTGGTACGCCTCTA
GTCCATGGGGAATACGAGCAAAATGATGAACAGCTTCTTCAGCCCAGGAG
CCCAATTCTTCGGCAACAGACTTCTCCCGTACAGTTCGAACGCGAAGCTT
CCGAAGCAGTGAGTTCTGAGCCATCCTATTTCAATAATTCCATGTATGAT
CTGGACTACGAAGCAGAAATTGATGTTCGCATGGAGCCAGAGAATAGCGG
TGTTCCATCTATTTTCACGGAGAATGCAACTGTGTCACATGGAGTTGGGG
ATAACACCCAGTACTATAGGTCAGCAGTATTGATTTTTAGCCCTCCAAGA
AAATCATATGGAGCCCCAGTATCTGTGACTGCGGCGCCCTTGGCATCTGT
TCCTGCGTTGGAAGATGTAGTCACCGGCACACCAATTCCAGCGACTGAAA
TTAGGATTGATACCGAACTGCTTGACACCACAAACGAAAGCCAGCAAGAA
CAGGATGCGAATGAGCCGAGCATCTCAAACGAACAAGAGAGCATGGACGA
CGATTCAACGACAACGGATGAAGAGAGCAATTATATTCAGGATACGTTCA
TGAACGATCTTCCAACGATTCTCCGAGAAGGAGAACTTGACGAAAATGAA
TCCAATGATGTACAGCGTGATTGTAACAATACACAGATTGTTTCAGTACC
CCGCTTTAGGCAGCCAGTTTCTGACAGTCATGGCCCGATTCTGCCCATAG
TGTCTCGAGAAAAGAGCACGTTATCGTCTCCCGAAAGAACCGACTTCGGA
AGTCCCGCAGCGACTCGGCCATTGCGTGAAAAGGATGTTGAACAGGTGAG
AGCAATGACTAACATTGACGCTATCGAAGACAGCGAGAAGGAAAACGCGT
TTCAAAGCACATCCACGTCCCCCGAGCGTCTCTCAAGAAAGCCGTGGCGT
TCAGACAGGCTCAATAACGTATTTAGCAGAAAGAACAGTGTTAGACGACT
TCGTATTCCCGAGAGAATCCGTAGAAGGCAATTGCGCCCTCAAAAACAAA
ACACGAAGAGTCTTTAG
back to top