Gchil7147.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7147.t1
Unique Name	Gchil7147.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:354758..355975 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102125.Xen7305DRAFT_00002670
Preferred name	prfA
PFAMs	PCRF,RF-1
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K02835
Evalue	1.36e-170
EggNOG OGs	COG0216@1\|root,COG0216@2\|Bacteria,1FZY4@1117\|Cyanobacteria,3VHWG@52604\|Pleurocapsales
Description	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
COG category	J
BRITE	ko00000,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7147	Gchil7147	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 354758..355975 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7147.t1.start1	Gchil7147.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 354758..354760 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7147.t1.CDS1	Gchil7147.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 354758..355975 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7147.t1.exon1	Gchil7147.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 354758..355975 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7147.t1.stop1	Gchil7147.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 355973..355975 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7147.t1	Gchil7147.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 354758..355975 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:354758..355975+
coding sequence from alignment at tig00004441_pilon:354758..355975+

mRNA sequence

>Gchil7147.t1 ID=Gchil7147.t1|Name=Gchil7147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=406bp
MALFFASPPIPMRSSVTQKSLICRSRPHPIAPTFSAPERAVPRMGEAGMI
RKLKTTKDTFDSLTMQLADPGIMSNSKELTRVSKARAALEPVVQAYEEWS
NSTNYLEEARELFSEATDDPELREMAREEIGVLEKRLGELEDDLKVLLLP
KDPNDQKNCMLELRAGTGGDEASIWAGDLVRVYMKYATTQNWSVSLVSES
TGTDGGYKECILEITGDAVYSKMKYEAGVHRVQRVPATETQGRVHTSTAT
VAIMPEVDEVEVKIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGI
RIFCTQERSQLKNRERAMQILRAKLYEMELAEQNAEIYGRRKSQVGTGSR
SEKIRTYNYKDSRVTDHRLGQNFPLQDFLNGAVDNIVQACIFKDQQSALE
NVENE*

spliced messenger RNA

>Gchil7147.t1 ID=Gchil7147.t1|Name=Gchil7147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00004441_pilon:354758..355975+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCTGTTCTTTGCGTCCCCTCCCATCCCAATGCGCAGTTCCGTAAC
TCAGAAATCTCTTATATGTCGGTCCAGACCACATCCTATAGCACCCACCT
TCTCCGCCCCGGAGAGAGCCGTTCCAAGAATGGGAGAAGCTGGAATGATT
CGAAAATTGAAAACAACAAAAGACACGTTTGATAGTTTAACAATGCAGCT
AGCGGACCCTGGTATTATGTCAAACTCGAAAGAGTTAACGCGAGTCAGCA
AAGCACGTGCTGCTCTGGAACCAGTAGTGCAAGCCTATGAAGAATGGTCC
AACTCCACAAACTATCTTGAAGAAGCTCGAGAATTGTTTTCCGAAGCCAC
CGACGATCCGGAACTTCGGGAAATGGCGCGTGAAGAAATTGGCGTCCTTG
AAAAGCGCCTGGGCGAACTTGAAGATGATCTTAAGGTGTTACTGTTACCC
AAAGACCCCAACGACCAAAAGAACTGTATGCTAGAACTTAGAGCGGGCAC
AGGAGGCGATGAAGCAAGTATCTGGGCTGGCGATCTTGTGCGGGTCTATA
TGAAGTATGCAACAACGCAAAACTGGTCCGTTTCTCTTGTTTCAGAGAGC
ACTGGTACAGATGGAGGTTACAAAGAATGTATTCTCGAAATTACCGGAGA
TGCAGTATATTCGAAGATGAAATATGAAGCTGGTGTTCATCGCGTCCAGA
GAGTCCCAGCTACAGAGACACAAGGGCGCGTACACACAAGCACTGCAACC
GTTGCAATAATGCCAGAAGTAGACGAAGTAGAAGTGAAGATCGACCCTAA
AGACATCGAGCTTACCACTGCGAGATCAGGAGGAGCAGGAGGACAAAATG
TGAACAAAGTCGAAACGGCCGTTGACCTTATTCACAAACCAACCGGGATT
CGAATATTTTGCACTCAGGAAAGATCCCAACTGAAGAACCGCGAAAGGGC
TATGCAAATTTTGAGAGCAAAACTGTACGAGATGGAGTTAGCTGAACAAA
ACGCTGAGATCTATGGTCGGAGAAAGAGCCAAGTAGGCACTGGATCACGC
TCTGAGAAGATTCGCACATACAACTATAAGGATTCCCGTGTAACCGACCA
TAGATTAGGACAGAACTTTCCCCTTCAAGACTTCCTAAATGGTGCTGTAG
ACAACATTGTTCAAGCTTGTATATTCAAGGATCAACAATCCGCATTGGAA
AACGTGGAAAACGAATAA

protein sequence of Gchil7147.t1

>Gchil7147.t1 ID=Gchil7147.t1|Name=Gchil7147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=406bp
MALFFASPPIPMRSSVTQKSLICRSRPHPIAPTFSAPERAVPRMGEAGMI
RKLKTTKDTFDSLTMQLADPGIMSNSKELTRVSKARAALEPVVQAYEEWS
NSTNYLEEARELFSEATDDPELREMAREEIGVLEKRLGELEDDLKVLLLP
KDPNDQKNCMLELRAGTGGDEASIWAGDLVRVYMKYATTQNWSVSLVSES
TGTDGGYKECILEITGDAVYSKMKYEAGVHRVQRVPATETQGRVHTSTAT
VAIMPEVDEVEVKIDPKDIELTTARSGGAGGQNVNKVETAVDLIHKPTGI
RIFCTQERSQLKNRERAMQILRAKLYEMELAEQNAEIYGRRKSQVGTGSR
SEKIRTYNYKDSRVTDHRLGQNFPLQDFLNGAVDNIVQACIFKDQQSALE
NVENE*

mRNA from alignment at tig00004441_pilon:354758..355975+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7147.t1 ID=Gchil7147.t1|Name=Gchil7147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00004441_pilon:354758..355975+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTGTTCTTTGCGTCCCCTCCCATCCCAATGCGCAGTTCCGTAAC
TCAGAAATCTCTTATATGTCGGTCCAGACCACATCCTATAGCACCCACCT
TCTCCGCCCCGGAGAGAGCCGTTCCAAGAATGGGAGAAGCTGGAATGATT
CGAAAATTGAAAACAACAAAAGACACGTTTGATAGTTTAACAATGCAGCT
AGCGGACCCTGGTATTATGTCAAACTCGAAAGAGTTAACGCGAGTCAGCA
AAGCACGTGCTGCTCTGGAACCAGTAGTGCAAGCCTATGAAGAATGGTCC
AACTCCACAAACTATCTTGAAGAAGCTCGAGAATTGTTTTCCGAAGCCAC
CGACGATCCGGAACTTCGGGAAATGGCGCGTGAAGAAATTGGCGTCCTTG
AAAAGCGCCTGGGCGAACTTGAAGATGATCTTAAGGTGTTACTGTTACCC
AAAGACCCCAACGACCAAAAGAACTGTATGCTAGAACTTAGAGCGGGCAC
AGGAGGCGATGAAGCAAGTATCTGGGCTGGCGATCTTGTGCGGGTCTATA
TGAAGTATGCAACAACGCAAAACTGGTCCGTTTCTCTTGTTTCAGAGAGC
ACTGGTACAGATGGAGGTTACAAAGAATGTATTCTCGAAATTACCGGAGA
TGCAGTATATTCGAAGATGAAATATGAAGCTGGTGTTCATCGCGTCCAGA
GAGTCCCAGCTACAGAGACACAAGGGCGCGTACACACAAGCACTGCAACC
GTTGCAATAATGCCAGAAGTAGACGAAGTAGAAGTGAAGATCGACCCTAA
AGACATCGAGCTTACCACTGCGAGATCAGGAGGAGCAGGAGGACAAAATG
TGAACAAAGTCGAAACGGCCGTTGACCTTATTCACAAACCAACCGGGATT
CGAATATTTTGCACTCAGGAAAGATCCCAACTGAAGAACCGCGAAAGGGC
TATGCAAATTTTGAGAGCAAAACTGTACGAGATGGAGTTAGCTGAACAAA
ACGCTGAGATCTATGGTCGGAGAAAGAGCCAAGTAGGCACTGGATCACGC
TCTGAGAAGATTCGCACATACAACTATAAGGATTCCCGTGTAACCGACCA
TAGATTAGGACAGAACTTTCCCCTTCAAGACTTCCTAAATGGTGCTGTAG
ACAACATTGTTCAAGCTTGTATATTCAAGGATCAACAATCCGCATTGGAA
AACGTGGAAAACGAATAA

Coding sequence (CDS) from alignment at tig00004441_pilon:354758..355975+

>Gchil7147.t1 ID=Gchil7147.t1|Name=Gchil7147.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00004441_pilon:354758..355975+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCTGTTCTTTGCGTCCCCTCCCATCCCAATGCGCAGTTCCGTAAC
TCAGAAATCTCTTATATGTCGGTCCAGACCACATCCTATAGCACCCACCT
TCTCCGCCCCGGAGAGAGCCGTTCCAAGAATGGGAGAAGCTGGAATGATT
CGAAAATTGAAAACAACAAAAGACACGTTTGATAGTTTAACAATGCAGCT
AGCGGACCCTGGTATTATGTCAAACTCGAAAGAGTTAACGCGAGTCAGCA
AAGCACGTGCTGCTCTGGAACCAGTAGTGCAAGCCTATGAAGAATGGTCC
AACTCCACAAACTATCTTGAAGAAGCTCGAGAATTGTTTTCCGAAGCCAC
CGACGATCCGGAACTTCGGGAAATGGCGCGTGAAGAAATTGGCGTCCTTG
AAAAGCGCCTGGGCGAACTTGAAGATGATCTTAAGGTGTTACTGTTACCC
AAAGACCCCAACGACCAAAAGAACTGTATGCTAGAACTTAGAGCGGGCAC
AGGAGGCGATGAAGCAAGTATCTGGGCTGGCGATCTTGTGCGGGTCTATA
TGAAGTATGCAACAACGCAAAACTGGTCCGTTTCTCTTGTTTCAGAGAGC
ACTGGTACAGATGGAGGTTACAAAGAATGTATTCTCGAAATTACCGGAGA
TGCAGTATATTCGAAGATGAAATATGAAGCTGGTGTTCATCGCGTCCAGA
GAGTCCCAGCTACAGAGACACAAGGGCGCGTACACACAAGCACTGCAACC
GTTGCAATAATGCCAGAAGTAGACGAAGTAGAAGTGAAGATCGACCCTAA
AGACATCGAGCTTACCACTGCGAGATCAGGAGGAGCAGGAGGACAAAATG
TGAACAAAGTCGAAACGGCCGTTGACCTTATTCACAAACCAACCGGGATT
CGAATATTTTGCACTCAGGAAAGATCCCAACTGAAGAACCGCGAAAGGGC
TATGCAAATTTTGAGAGCAAAACTGTACGAGATGGAGTTAGCTGAACAAA
ACGCTGAGATCTATGGTCGGAGAAAGAGCCAAGTAGGCACTGGATCACGC
TCTGAGAAGATTCGCACATACAACTATAAGGATTCCCGTGTAACCGACCA
TAGATTAGGACAGAACTTTCCCCTTCAAGACTTCCTAAATGGTGCTGTAG
ACAACATTGTTCAAGCTTGTATATTCAAGGATCAACAATCCGCATTGGAA
AACGTGGAAAACGAATAA