Gchil7145.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7145.t1
Unique NameGchil7145.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:350344..351431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709223.1
Preferred nameRABGGTA
PFAMsLRR_9,PPTA,RabGGT_insert
Max annot lvl2759|Eukaryota
KEGG koko:K14050,ko:K20306
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Evalue1.49e-61
EggNOG OGsCOG5536@1|root,KOG0529@2759|Eukaryota
EC2.5.1.60
Descriptionprotein geranylgeranylation
COG categoryO
BRITEko00000,ko01000,ko01006,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7145Gchil7145Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 350344..351431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7145.t1Gchil7145.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 350344..351431 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7145.t1.start1Gchil7145.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 350344..350346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7145.t1.CDS1Gchil7145.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 350344..351282 +
Gchil7145.t1.CDS2Gchil7145.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 351372..351431 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7145.t1.exon1Gchil7145.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 350344..351282 +
Gchil7145.t1.exon2Gchil7145.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 351372..351431 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7145.t1.intron1Gchil7145.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 351283..351371 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7145.t1.stop1Gchil7145.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 351429..351431 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7145.t1 ID=Gchil7145.t1|Name=Gchil7145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp
MHGVRRGVRPTAAEHQRELEKAAVCADLIHDALQLRNTPLITPLDASFFN
QYHVVERALETNPDEYSLWAFRRRVLLCKCQYESIDSILRAWKEELVLTT
RALQRHPKAYPAWQHRLWLLQDSELAQHIPSQQRLEAIQSEWKLSAYMLS
KDARNFHGWAHRMRVRSVLTSVMPEKESQLEQEELLFAESKINDDFSNYS
AWHHRSLLLAKVGDRSSPNFLTDELQYVKQAFYTEPNVQSAWFYHRWLLA
GAPARTEKAKVQRQVLEDELQACNELLDIEPEARYALQTKAQLLIQLKRP
NEAEAVLDDLERLDPMRKGYYRYLRAKSDTAA*
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spliced messenger RNA

>Gchil7145.t1 ID=Gchil7145.t1|Name=Gchil7145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004441_pilon:350344..351431+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGGCGTACGGAGAGGGGTGCGCCCGACTGCGGCCGAACACCAGCG
TGAGCTCGAAAAAGCGGCTGTCTGTGCCGATCTGATCCACGACGCGCTCC
AGCTCCGAAACACCCCTTTGATCACCCCGCTCGACGCGTCTTTCTTTAAC
CAGTACCACGTCGTCGAGAGAGCGCTTGAAACAAATCCGGATGAGTATTC
GCTGTGGGCCTTTCGCCGTCGCGTCTTGTTATGCAAATGCCAGTATGAAT
CAATTGATTCCATTCTGAGAGCGTGGAAGGAAGAGCTCGTTCTCACCACG
AGAGCTCTGCAGCGACACCCCAAGGCATACCCTGCGTGGCAGCATCGCTT
GTGGCTGCTGCAAGATTCCGAACTGGCCCAGCATATCCCCTCTCAACAGC
GACTAGAAGCCATTCAAAGTGAATGGAAGCTTAGCGCCTATATGCTGTCA
AAAGATGCGCGCAATTTTCATGGATGGGCTCATAGAATGAGAGTCAGATC
GGTGCTGACGTCCGTTATGCCAGAAAAAGAATCGCAACTCGAGCAGGAGG
AGCTTTTGTTTGCGGAGAGCAAGATAAACGACGATTTTTCAAACTACTCA
GCGTGGCACCATCGAAGCCTATTGCTCGCCAAGGTGGGCGATCGCTCCTC
ACCAAATTTCTTAACCGACGAACTGCAATACGTCAAGCAAGCATTCTATA
CTGAGCCAAATGTGCAATCAGCATGGTTCTATCACCGATGGCTTCTGGCC
GGCGCACCGGCGAGAACAGAAAAGGCCAAGGTGCAGAGGCAAGTGCTTGA
AGACGAGTTGCAGGCGTGCAATGAACTGTTGGATATTGAGCCGGAGGCAA
GATATGCACTTCAAACGAAAGCTCAGTTGCTCATACAACTCAAACGTCCA
AATGAAGCAGAGGCCGTTCTTGATGACCTAGAACGATTGGATCCAATGCG
AAAAGGATACTATCGCTATCTACGAGCAAAAAGCGACACTGCAGCGTAG
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protein sequence of Gchil7145.t1

>Gchil7145.t1 ID=Gchil7145.t1|Name=Gchil7145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=333bp
MHGVRRGVRPTAAEHQRELEKAAVCADLIHDALQLRNTPLITPLDASFFN
QYHVVERALETNPDEYSLWAFRRRVLLCKCQYESIDSILRAWKEELVLTT
RALQRHPKAYPAWQHRLWLLQDSELAQHIPSQQRLEAIQSEWKLSAYMLS
KDARNFHGWAHRMRVRSVLTSVMPEKESQLEQEELLFAESKINDDFSNYS
AWHHRSLLLAKVGDRSSPNFLTDELQYVKQAFYTEPNVQSAWFYHRWLLA
GAPARTEKAKVQRQVLEDELQACNELLDIEPEARYALQTKAQLLIQLKRP
NEAEAVLDDLERLDPMRKGYYRYLRAKSDTAA*
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mRNA from alignment at tig00004441_pilon:350344..351431+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7145.t1 ID=Gchil7145.t1|Name=Gchil7145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1088bp|location=Sequence derived from alignment at tig00004441_pilon:350344..351431+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGGCGTACGGAGAGGGGTGCGCCCGACTGCGGCCGAACACCAGCG
TGAGCTCGAAAAAGCGGCTGTCTGTGCCGATCTGATCCACGACGCGCTCC
AGCTCCGAAACACCCCTTTGATCACCCCGCTCGACGCGTCTTTCTTTAAC
CAGTACCACGTCGTCGAGAGAGCGCTTGAAACAAATCCGGATGAGTATTC
GCTGTGGGCCTTTCGCCGTCGCGTCTTGTTATGCAAATGCCAGTATGAAT
CAATTGATTCCATTCTGAGAGCGTGGAAGGAAGAGCTCGTTCTCACCACG
AGAGCTCTGCAGCGACACCCCAAGGCATACCCTGCGTGGCAGCATCGCTT
GTGGCTGCTGCAAGATTCCGAACTGGCCCAGCATATCCCCTCTCAACAGC
GACTAGAAGCCATTCAAAGTGAATGGAAGCTTAGCGCCTATATGCTGTCA
AAAGATGCGCGCAATTTTCATGGATGGGCTCATAGAATGAGAGTCAGATC
GGTGCTGACGTCCGTTATGCCAGAAAAAGAATCGCAACTCGAGCAGGAGG
AGCTTTTGTTTGCGGAGAGCAAGATAAACGACGATTTTTCAAACTACTCA
GCGTGGCACCATCGAAGCCTATTGCTCGCCAAGGTGGGCGATCGCTCCTC
ACCAAATTTCTTAACCGACGAACTGCAATACGTCAAGCAAGCATTCTATA
CTGAGCCAAATGTGCAATCAGCATGGTTCTATCACCGATGGCTTCTGGCC
GGCGCACCGGCGAGAACAGAAAAGGCCAAGGTGCAGAGGCAAGTGCTTGA
AGACGAGTTGCAGGCGTGCAATGAACTGTTGGATATTGAGCCGGAGGCAA
GATATGCACTTCAAACGAAAGCTCAGTTGCTCATACAACTCAAACGTCCA
AATGAAGCAGAGGCCGTTCTTGATGACCTAGAACGATTGGTGAGTGTTGG
CCACATTTCTCTTCGCTAAGACCAGCAAGCGCTCAGCCCTGCACACGTCG
CTAACTCACTGTTATGAACATTGCACAGGATCCAATGCGAAAAGGATACT
ATCGCTATCTACGAGCAAAAAGCGACACTGCAGCGTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:350344..351431+

>Gchil7145.t1 ID=Gchil7145.t1|Name=Gchil7145.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00004441_pilon:350344..351431+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGGCGTACGGAGAGGGGTGCGCCCGACTGCGGCCGAACACCAGCG
TGAGCTCGAAAAAGCGGCTGTCTGTGCCGATCTGATCCACGACGCGCTCC
AGCTCCGAAACACCCCTTTGATCACCCCGCTCGACGCGTCTTTCTTTAAC
CAGTACCACGTCGTCGAGAGAGCGCTTGAAACAAATCCGGATGAGTATTC
GCTGTGGGCCTTTCGCCGTCGCGTCTTGTTATGCAAATGCCAGTATGAAT
CAATTGATTCCATTCTGAGAGCGTGGAAGGAAGAGCTCGTTCTCACCACG
AGAGCTCTGCAGCGACACCCCAAGGCATACCCTGCGTGGCAGCATCGCTT
GTGGCTGCTGCAAGATTCCGAACTGGCCCAGCATATCCCCTCTCAACAGC
GACTAGAAGCCATTCAAAGTGAATGGAAGCTTAGCGCCTATATGCTGTCA
AAAGATGCGCGCAATTTTCATGGATGGGCTCATAGAATGAGAGTCAGATC
GGTGCTGACGTCCGTTATGCCAGAAAAAGAATCGCAACTCGAGCAGGAGG
AGCTTTTGTTTGCGGAGAGCAAGATAAACGACGATTTTTCAAACTACTCA
GCGTGGCACCATCGAAGCCTATTGCTCGCCAAGGTGGGCGATCGCTCCTC
ACCAAATTTCTTAACCGACGAACTGCAATACGTCAAGCAAGCATTCTATA
CTGAGCCAAATGTGCAATCAGCATGGTTCTATCACCGATGGCTTCTGGCC
GGCGCACCGGCGAGAACAGAAAAGGCCAAGGTGCAGAGGCAAGTGCTTGA
AGACGAGTTGCAGGCGTGCAATGAACTGTTGGATATTGAGCCGGAGGCAA
GATATGCACTTCAAACGAAAGCTCAGTTGCTCATACAACTCAAACGTCCA
AATGAAGCAGAGGCCGTTCTTGATGACCTAGAACGATTGGATCCAATGCG
AAAAGGATACTATCGCTATCTACGAGCAAAAAGCGACACTGCAGCGTAG
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