Gchil7141.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7141.t1
Unique NameGchil7141.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:339987..340772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS215CT
Preferred nameTFB3
PFAMsMAT1,zf-C3HC4_5
Max annot lvl2759|Eukaryota
KEGG koko:K10842
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000079,GO:0000109,GO:0000112,GO:0000428,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008047,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009889,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0016070,GO:0016310,GO:0016538,GO:0016567,GO:0016591,GO:0016740,GO:0018130,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019887,GO:0030234,GO:0030295,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033674,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0061575,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070816,GO:0070985,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0098772,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904029,GO:1904031,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Evalue6.55e-22
EggNOG OGsCOG5220@1|root,KOG3800@2759|Eukaryota
Descriptioncyclin-dependent protein serine/threonine kinase activator activity
COG categoryDKL
BRITEko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7141Gchil7141Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 339987..340772 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7141.t1.start1Gchil7141.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 339987..339989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7141.t1.CDS1Gchil7141.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 339987..340772 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7141.t1.exon1Gchil7141.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 339987..340772 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7141.t1.stop1Gchil7141.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 340770..340772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7141.t1Gchil7141.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 339987..340772 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7141.t1 ID=Gchil7141.t1|Name=Gchil7141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=262bp
MSDKYDVDFEDERAALTKDAQVRRRYLRIFNKRRDEFGGDGEYDDYLEMV
EELIFKLVNNVDVEGTKSFIEKYRRDNQDAIARNQVKRADEERSEAERVA
ISERQRLGKLAELRRQDEQLEAQRREQRRQEQAEQLLRIQKGDEAVSRLR
KRREKAQRKRRKKEAAAAAAEKEEKQRVKQALMWVRPTYANAAPGPVREE
SVRTDLRPRERDDENSRSDDLRRRAARGGGFRQRLVFERALLEFEQSLLV
AGALPIGAAQK*
back to top

spliced messenger RNA

>Gchil7141.t1 ID=Gchil7141.t1|Name=Gchil7141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00004441_pilon:339987..340772+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACAAATACGACGTGGACTTTGAGGACGAGCGCGCGGCGCTGAC
GAAGGACGCGCAGGTGCGGCGGCGATACTTGCGCATCTTTAACAAGCGGC
GCGATGAGTTTGGTGGTGACGGCGAGTATGACGATTACTTGGAGATGGTG
GAGGAGCTCATCTTCAAGCTGGTGAACAATGTGGACGTGGAAGGTACCAA
AAGCTTTATCGAGAAGTATCGACGCGACAACCAGGACGCGATCGCGCGCA
ACCAGGTGAAGCGCGCCGACGAGGAACGCAGCGAGGCAGAGCGGGTGGCC
ATCAGCGAGCGCCAACGCCTGGGCAAGCTGGCCGAGCTCCGCCGCCAAGA
CGAGCAACTAGAGGCGCAACGGCGCGAACAACGAAGACAAGAGCAAGCCG
AACAGTTATTACGCATTCAAAAGGGCGACGAGGCGGTAAGTCGTCTCCGC
AAGCGACGCGAAAAGGCACAACGCAAGAGACGAAAGAAAGAAGCGGCGGC
AGCGGCAGCGGAAAAGGAGGAGAAGCAACGCGTGAAACAGGCGTTGATGT
GGGTGCGTCCGACGTATGCGAACGCGGCGCCCGGGCCTGTGCGGGAGGAG
AGTGTGAGGACGGACTTGCGACCGCGAGAGAGGGACGACGAGAATTCGCG
TTCAGACGACTTGAGACGACGCGCGGCGCGCGGCGGTGGGTTTAGACAGC
GTCTTGTGTTTGAGCGCGCGCTGTTGGAGTTTGAGCAGTCGCTGTTGGTG
GCGGGGGCGCTGCCCATTGGGGCGGCGCAAAAGTAA
back to top

protein sequence of Gchil7141.t1

>Gchil7141.t1 ID=Gchil7141.t1|Name=Gchil7141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MSDKYDVDFEDERAALTKDAQVRRRYLRIFNKRRDEFGGDGEYDDYLEMV
EELIFKLVNNVDVEGTKSFIEKYRRDNQDAIARNQVKRADEERSEAERVA
ISERQRLGKLAELRRQDEQLEAQRREQRRQEQAEQLLRIQKGDEAVSRLR
KRREKAQRKRRKKEAAAAAAEKEEKQRVKQALMWVRPTYANAAPGPVREE
SVRTDLRPRERDDENSRSDDLRRRAARGGGFRQRLVFERALLEFEQSLLV
AGALPIGAAQK*
back to top

mRNA from alignment at tig00004441_pilon:339987..340772+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7141.t1 ID=Gchil7141.t1|Name=Gchil7141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00004441_pilon:339987..340772+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGACAAATACGACGTGGACTTTGAGGACGAGCGCGCGGCGCTGAC
GAAGGACGCGCAGGTGCGGCGGCGATACTTGCGCATCTTTAACAAGCGGC
GCGATGAGTTTGGTGGTGACGGCGAGTATGACGATTACTTGGAGATGGTG
GAGGAGCTCATCTTCAAGCTGGTGAACAATGTGGACGTGGAAGGTACCAA
AAGCTTTATCGAGAAGTATCGACGCGACAACCAGGACGCGATCGCGCGCA
ACCAGGTGAAGCGCGCCGACGAGGAACGCAGCGAGGCAGAGCGGGTGGCC
ATCAGCGAGCGCCAACGCCTGGGCAAGCTGGCCGAGCTCCGCCGCCAAGA
CGAGCAACTAGAGGCGCAACGGCGCGAACAACGAAGACAAGAGCAAGCCG
AACAGTTATTACGCATTCAAAAGGGCGACGAGGCGGTAAGTCGTCTCCGC
AAGCGACGCGAAAAGGCACAACGCAAGAGACGAAAGAAAGAAGCGGCGGC
AGCGGCAGCGGAAAAGGAGGAGAAGCAACGCGTGAAACAGGCGTTGATGT
GGGTGCGTCCGACGTATGCGAACGCGGCGCCCGGGCCTGTGCGGGAGGAG
AGTGTGAGGACGGACTTGCGACCGCGAGAGAGGGACGACGAGAATTCGCG
TTCAGACGACTTGAGACGACGCGCGGCGCGCGGCGGTGGGTTTAGACAGC
GTCTTGTGTTTGAGCGCGCGCTGTTGGAGTTTGAGCAGTCGCTGTTGGTG
GCGGGGGCGCTGCCCATTGGGGCGGCGCAAAAGTAA
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:339987..340772+

>Gchil7141.t1 ID=Gchil7141.t1|Name=Gchil7141.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00004441_pilon:339987..340772+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGACAAATACGACGTGGACTTTGAGGACGAGCGCGCGGCGCTGAC
GAAGGACGCGCAGGTGCGGCGGCGATACTTGCGCATCTTTAACAAGCGGC
GCGATGAGTTTGGTGGTGACGGCGAGTATGACGATTACTTGGAGATGGTG
GAGGAGCTCATCTTCAAGCTGGTGAACAATGTGGACGTGGAAGGTACCAA
AAGCTTTATCGAGAAGTATCGACGCGACAACCAGGACGCGATCGCGCGCA
ACCAGGTGAAGCGCGCCGACGAGGAACGCAGCGAGGCAGAGCGGGTGGCC
ATCAGCGAGCGCCAACGCCTGGGCAAGCTGGCCGAGCTCCGCCGCCAAGA
CGAGCAACTAGAGGCGCAACGGCGCGAACAACGAAGACAAGAGCAAGCCG
AACAGTTATTACGCATTCAAAAGGGCGACGAGGCGGTAAGTCGTCTCCGC
AAGCGACGCGAAAAGGCACAACGCAAGAGACGAAAGAAAGAAGCGGCGGC
AGCGGCAGCGGAAAAGGAGGAGAAGCAACGCGTGAAACAGGCGTTGATGT
GGGTGCGTCCGACGTATGCGAACGCGGCGCCCGGGCCTGTGCGGGAGGAG
AGTGTGAGGACGGACTTGCGACCGCGAGAGAGGGACGACGAGAATTCGCG
TTCAGACGACTTGAGACGACGCGCGGCGCGCGGCGGTGGGTTTAGACAGC
GTCTTGTGTTTGAGCGCGCGCTGTTGGAGTTTGAGCAGTCGCTGTTGGTG
GCGGGGGCGCTGCCCATTGGGGCGGCGCAAAAGTAA
back to top