Gchil7137.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7137.t1
Unique Name	Gchil7137.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	648

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:328305..330248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707605.1
PFAMs	BET,Bromodomain,HATPase_c_3,MBD,WSD
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11721
Evalue	5.49e-27
EggNOG OGs	COG5076@1\|root,KOG1474@2759\|Eukaryota
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko01001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7137	Gchil7137	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 328305..330248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7137.t1.start1	Gchil7137.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 328305..328307 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7137.t1.CDS1	Gchil7137.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 328305..330248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7137.t1.exon1	Gchil7137.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 328305..330248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7137.t1.stop1	Gchil7137.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 330246..330248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7137.t1	Gchil7137.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 328305..330248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:328305..330248+
coding sequence from alignment at tig00004441_pilon:328305..330248+

mRNA sequence

>Gchil7137.t1 ID=Gchil7137.t1|Name=Gchil7137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=648bp
MHSDMRPVWEDLPASPCSAASDDSTMRVTRSSSQSSRPSLLKPCPPSVSL
PDLSNASNFSLQQEPSSPTTKRARVESSNLQAAAGFIEATPNSKDPNADF
VAKLNSNADEERRRFLLEKLQAIKSRKEALKSSPSGDDDVVLVAQKTNTK
RKNTKPTARTTRKRKQAPRRRGAGSTRVPSKSPADVHQIINVDDDSPMSA
RRCGKNKNGSATKQPASHPTRQSSRVRRPRATIDEEPSSSSAPLPTCMSK
CKRLQFCKRLVNTMLREPSSGPFSAPVKELWHEASIPRYFDVVKQPMDLR
TVKKRLSTTEYIESVRDGVLPYRFDAEAFAHDVRLIFRNAMVYNRVGDML
YNCASNLQDDFNKKFSEGLPPPPSPEEITSKLSKKRSGGGRSRRGKPGSE
TYTTAMEENAEVVCVSSPSKEKTKISKQTRRKAIAAAREVIMFSDPDTMS
RNEMRERLEYLERCRAPVLARTPVAKGAGYLTLAALLYEVEMSFEEKKRC
GDGVTNVPPSKLPALLSIIQKSSQEAGCNPDDEVELDMDKLDNRTMRNIE
AFLEHTLPNFKTVRSSSLGREFNCVEEVEQEINVLQERYGSCKRSSGPER
KGRECQQVVDKPVSFFEERQNVSYSSSDSSSEGSDSESSDDSDCDTD*

spliced messenger RNA

>Gchil7137.t1 ID=Gchil7137.t1|Name=Gchil7137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00004441_pilon:328305..330248+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCAGACATGCGACCAGTATGGGAAGATTTGCCTGCGAGTCCGTG
TTCCGCTGCTAGCGACGACTCAACCATGCGCGTCACACGTTCATCCTCGC
AGTCGTCTCGCCCAAGTCTTTTGAAGCCTTGTCCCCCATCGGTATCTCTT
CCCGATCTTTCGAACGCTTCCAACTTTTCCCTTCAACAAGAGCCTTCATC
GCCGACAACCAAGCGCGCACGCGTGGAATCTTCCAACCTACAAGCTGCGG
CAGGGTTTATTGAGGCCACTCCCAATTCTAAAGACCCTAACGCGGATTTT
GTTGCCAAGTTGAATAGCAACGCAGACGAAGAGCGCCGTCGCTTCCTGTT
GGAAAAGCTACAGGCTATCAAATCAAGAAAAGAAGCCTTAAAATCGTCTC
CATCCGGAGACGATGATGTTGTTCTAGTTGCACAGAAAACAAATACGAAG
CGAAAGAACACAAAGCCCACTGCACGCACCACGCGCAAGAGGAAGCAGGC
ACCTCGCCGTCGAGGTGCGGGTAGTACCCGCGTCCCCAGCAAATCTCCCG
CCGACGTCCACCAGATCATCAATGTTGACGACGATTCTCCCATGTCAGCT
AGGCGATGCGGCAAAAACAAAAATGGGTCGGCCACTAAGCAGCCTGCGTC
CCACCCAACTCGTCAGTCGTCTCGTGTGCGGAGACCAAGAGCCACAATAG
ACGAAGAACCCTCTTCAAGCTCTGCCCCACTCCCCACGTGCATGTCAAAA
TGTAAGAGATTGCAGTTTTGCAAGAGATTGGTAAACACCATGTTGCGCGA
ACCGTCATCTGGCCCGTTTTCTGCACCAGTCAAGGAACTCTGGCACGAGG
CTTCCATCCCGCGTTACTTCGATGTTGTGAAGCAGCCTATGGACTTGCGC
ACTGTCAAGAAAAGGCTCTCAACAACGGAGTACATTGAGTCGGTGAGAGA
TGGAGTGCTTCCATACCGCTTCGATGCCGAAGCTTTTGCGCATGACGTGC
GCTTGATATTTAGGAATGCTATGGTATACAATAGGGTTGGAGACATGTTA
TACAATTGCGCAAGCAATTTACAAGATGACTTCAACAAAAAGTTCAGTGA
AGGTCTTCCTCCACCACCCTCCCCGGAGGAAATAACAAGCAAGCTCTCAA
AGAAGCGCAGTGGTGGTGGACGTTCGCGAAGAGGAAAGCCGGGCAGTGAA
ACTTATACTACAGCCATGGAGGAGAATGCAGAGGTTGTATGCGTATCTTC
TCCTAGTAAGGAGAAGACGAAAATCTCCAAGCAGACCAGACGCAAGGCCA
TAGCAGCCGCGAGGGAGGTGATTATGTTCTCGGACCCTGATACAATGTCA
CGCAATGAAATGCGTGAGAGGTTAGAATATTTGGAGCGGTGTCGAGCCCC
TGTGCTCGCTAGGACTCCCGTGGCCAAGGGTGCTGGGTACTTGACTCTGG
CTGCGCTTCTCTACGAAGTGGAAATGAGTTTCGAAGAGAAAAAGAGATGC
GGGGATGGTGTGACTAATGTTCCACCGAGCAAATTACCCGCGCTGCTGTC
CATTATCCAGAAATCTAGTCAAGAGGCGGGTTGTAATCCGGATGACGAGG
TAGAACTTGACATGGATAAGCTTGATAACCGCACAATGCGCAATATCGAA
GCATTCCTTGAACATACTCTACCGAACTTCAAGACGGTAAGGTCTTCTTC
GCTTGGTCGTGAGTTCAATTGCGTGGAGGAGGTTGAACAGGAGATAAATG
TGTTGCAGGAGAGGTATGGAAGCTGCAAGAGGAGCAGCGGACCCGAAAGG
AAAGGGAGAGAGTGCCAGCAGGTGGTTGACAAACCGGTATCGTTCTTCGA
GGAGCGTCAGAACGTGAGCTACAGCAGCTCGGACTCGTCGTCCGAAGGGT
CCGACTCGGAATCGAGTGATGACAGCGACTGTGATACTGATTAG

protein sequence of Gchil7137.t1

>Gchil7137.t1 ID=Gchil7137.t1|Name=Gchil7137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=648bp
MHSDMRPVWEDLPASPCSAASDDSTMRVTRSSSQSSRPSLLKPCPPSVSL
PDLSNASNFSLQQEPSSPTTKRARVESSNLQAAAGFIEATPNSKDPNADF
VAKLNSNADEERRRFLLEKLQAIKSRKEALKSSPSGDDDVVLVAQKTNTK
RKNTKPTARTTRKRKQAPRRRGAGSTRVPSKSPADVHQIINVDDDSPMSA
RRCGKNKNGSATKQPASHPTRQSSRVRRPRATIDEEPSSSSAPLPTCMSK
CKRLQFCKRLVNTMLREPSSGPFSAPVKELWHEASIPRYFDVVKQPMDLR
TVKKRLSTTEYIESVRDGVLPYRFDAEAFAHDVRLIFRNAMVYNRVGDML
YNCASNLQDDFNKKFSEGLPPPPSPEEITSKLSKKRSGGGRSRRGKPGSE
TYTTAMEENAEVVCVSSPSKEKTKISKQTRRKAIAAAREVIMFSDPDTMS
RNEMRERLEYLERCRAPVLARTPVAKGAGYLTLAALLYEVEMSFEEKKRC
GDGVTNVPPSKLPALLSIIQKSSQEAGCNPDDEVELDMDKLDNRTMRNIE
AFLEHTLPNFKTVRSSSLGREFNCVEEVEQEINVLQERYGSCKRSSGPER
KGRECQQVVDKPVSFFEERQNVSYSSSDSSSEGSDSESSDDSDCDTD*

mRNA from alignment at tig00004441_pilon:328305..330248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7137.t1 ID=Gchil7137.t1|Name=Gchil7137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1944bp|location=Sequence derived from alignment at tig00004441_pilon:328305..330248+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTCAGACATGCGACCAGTATGGGAAGATTTGCCTGCGAGTCCGTG
TTCCGCTGCTAGCGACGACTCAACCATGCGCGTCACACGTTCATCCTCGC
AGTCGTCTCGCCCAAGTCTTTTGAAGCCTTGTCCCCCATCGGTATCTCTT
CCCGATCTTTCGAACGCTTCCAACTTTTCCCTTCAACAAGAGCCTTCATC
GCCGACAACCAAGCGCGCACGCGTGGAATCTTCCAACCTACAAGCTGCGG
CAGGGTTTATTGAGGCCACTCCCAATTCTAAAGACCCTAACGCGGATTTT
GTTGCCAAGTTGAATAGCAACGCAGACGAAGAGCGCCGTCGCTTCCTGTT
GGAAAAGCTACAGGCTATCAAATCAAGAAAAGAAGCCTTAAAATCGTCTC
CATCCGGAGACGATGATGTTGTTCTAGTTGCACAGAAAACAAATACGAAG
CGAAAGAACACAAAGCCCACTGCACGCACCACGCGCAAGAGGAAGCAGGC
ACCTCGCCGTCGAGGTGCGGGTAGTACCCGCGTCCCCAGCAAATCTCCCG
CCGACGTCCACCAGATCATCAATGTTGACGACGATTCTCCCATGTCAGCT
AGGCGATGCGGCAAAAACAAAAATGGGTCGGCCACTAAGCAGCCTGCGTC
CCACCCAACTCGTCAGTCGTCTCGTGTGCGGAGACCAAGAGCCACAATAG
ACGAAGAACCCTCTTCAAGCTCTGCCCCACTCCCCACGTGCATGTCAAAA
TGTAAGAGATTGCAGTTTTGCAAGAGATTGGTAAACACCATGTTGCGCGA
ACCGTCATCTGGCCCGTTTTCTGCACCAGTCAAGGAACTCTGGCACGAGG
CTTCCATCCCGCGTTACTTCGATGTTGTGAAGCAGCCTATGGACTTGCGC
ACTGTCAAGAAAAGGCTCTCAACAACGGAGTACATTGAGTCGGTGAGAGA
TGGAGTGCTTCCATACCGCTTCGATGCCGAAGCTTTTGCGCATGACGTGC
GCTTGATATTTAGGAATGCTATGGTATACAATAGGGTTGGAGACATGTTA
TACAATTGCGCAAGCAATTTACAAGATGACTTCAACAAAAAGTTCAGTGA
AGGTCTTCCTCCACCACCCTCCCCGGAGGAAATAACAAGCAAGCTCTCAA
AGAAGCGCAGTGGTGGTGGACGTTCGCGAAGAGGAAAGCCGGGCAGTGAA
ACTTATACTACAGCCATGGAGGAGAATGCAGAGGTTGTATGCGTATCTTC
TCCTAGTAAGGAGAAGACGAAAATCTCCAAGCAGACCAGACGCAAGGCCA
TAGCAGCCGCGAGGGAGGTGATTATGTTCTCGGACCCTGATACAATGTCA
CGCAATGAAATGCGTGAGAGGTTAGAATATTTGGAGCGGTGTCGAGCCCC
TGTGCTCGCTAGGACTCCCGTGGCCAAGGGTGCTGGGTACTTGACTCTGG
CTGCGCTTCTCTACGAAGTGGAAATGAGTTTCGAAGAGAAAAAGAGATGC
GGGGATGGTGTGACTAATGTTCCACCGAGCAAATTACCCGCGCTGCTGTC
CATTATCCAGAAATCTAGTCAAGAGGCGGGTTGTAATCCGGATGACGAGG
TAGAACTTGACATGGATAAGCTTGATAACCGCACAATGCGCAATATCGAA
GCATTCCTTGAACATACTCTACCGAACTTCAAGACGGTAAGGTCTTCTTC
GCTTGGTCGTGAGTTCAATTGCGTGGAGGAGGTTGAACAGGAGATAAATG
TGTTGCAGGAGAGGTATGGAAGCTGCAAGAGGAGCAGCGGACCCGAAAGG
AAAGGGAGAGAGTGCCAGCAGGTGGTTGACAAACCGGTATCGTTCTTCGA
GGAGCGTCAGAACGTGAGCTACAGCAGCTCGGACTCGTCGTCCGAAGGGT
CCGACTCGGAATCGAGTGATGACAGCGACTGTGATACTGATTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:328305..330248+

>Gchil7137.t1 ID=Gchil7137.t1|Name=Gchil7137.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1944bp|location=Sequence derived from alignment at tig00004441_pilon:328305..330248+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTCAGACATGCGACCAGTATGGGAAGATTTGCCTGCGAGTCCGTG
TTCCGCTGCTAGCGACGACTCAACCATGCGCGTCACACGTTCATCCTCGC
AGTCGTCTCGCCCAAGTCTTTTGAAGCCTTGTCCCCCATCGGTATCTCTT
CCCGATCTTTCGAACGCTTCCAACTTTTCCCTTCAACAAGAGCCTTCATC
GCCGACAACCAAGCGCGCACGCGTGGAATCTTCCAACCTACAAGCTGCGG
CAGGGTTTATTGAGGCCACTCCCAATTCTAAAGACCCTAACGCGGATTTT
GTTGCCAAGTTGAATAGCAACGCAGACGAAGAGCGCCGTCGCTTCCTGTT
GGAAAAGCTACAGGCTATCAAATCAAGAAAAGAAGCCTTAAAATCGTCTC
CATCCGGAGACGATGATGTTGTTCTAGTTGCACAGAAAACAAATACGAAG
CGAAAGAACACAAAGCCCACTGCACGCACCACGCGCAAGAGGAAGCAGGC
ACCTCGCCGTCGAGGTGCGGGTAGTACCCGCGTCCCCAGCAAATCTCCCG
CCGACGTCCACCAGATCATCAATGTTGACGACGATTCTCCCATGTCAGCT
AGGCGATGCGGCAAAAACAAAAATGGGTCGGCCACTAAGCAGCCTGCGTC
CCACCCAACTCGTCAGTCGTCTCGTGTGCGGAGACCAAGAGCCACAATAG
ACGAAGAACCCTCTTCAAGCTCTGCCCCACTCCCCACGTGCATGTCAAAA
TGTAAGAGATTGCAGTTTTGCAAGAGATTGGTAAACACCATGTTGCGCGA
ACCGTCATCTGGCCCGTTTTCTGCACCAGTCAAGGAACTCTGGCACGAGG
CTTCCATCCCGCGTTACTTCGATGTTGTGAAGCAGCCTATGGACTTGCGC
ACTGTCAAGAAAAGGCTCTCAACAACGGAGTACATTGAGTCGGTGAGAGA
TGGAGTGCTTCCATACCGCTTCGATGCCGAAGCTTTTGCGCATGACGTGC
GCTTGATATTTAGGAATGCTATGGTATACAATAGGGTTGGAGACATGTTA
TACAATTGCGCAAGCAATTTACAAGATGACTTCAACAAAAAGTTCAGTGA
AGGTCTTCCTCCACCACCCTCCCCGGAGGAAATAACAAGCAAGCTCTCAA
AGAAGCGCAGTGGTGGTGGACGTTCGCGAAGAGGAAAGCCGGGCAGTGAA
ACTTATACTACAGCCATGGAGGAGAATGCAGAGGTTGTATGCGTATCTTC
TCCTAGTAAGGAGAAGACGAAAATCTCCAAGCAGACCAGACGCAAGGCCA
TAGCAGCCGCGAGGGAGGTGATTATGTTCTCGGACCCTGATACAATGTCA
CGCAATGAAATGCGTGAGAGGTTAGAATATTTGGAGCGGTGTCGAGCCCC
TGTGCTCGCTAGGACTCCCGTGGCCAAGGGTGCTGGGTACTTGACTCTGG
CTGCGCTTCTCTACGAAGTGGAAATGAGTTTCGAAGAGAAAAAGAGATGC
GGGGATGGTGTGACTAATGTTCCACCGAGCAAATTACCCGCGCTGCTGTC
CATTATCCAGAAATCTAGTCAAGAGGCGGGTTGTAATCCGGATGACGAGG
TAGAACTTGACATGGATAAGCTTGATAACCGCACAATGCGCAATATCGAA
GCATTCCTTGAACATACTCTACCGAACTTCAAGACGGTAAGGTCTTCTTC
GCTTGGTCGTGAGTTCAATTGCGTGGAGGAGGTTGAACAGGAGATAAATG
TGTTGCAGGAGAGGTATGGAAGCTGCAAGAGGAGCAGCGGACCCGAAAGG
AAAGGGAGAGAGTGCCAGCAGGTGGTTGACAAACCGGTATCGTTCTTCGA
GGAGCGTCAGAACGTGAGCTACAGCAGCTCGGACTCGTCGTCCGAAGGGT
CCGACTCGGAATCGAGTGATGACAGCGACTGTGATACTGATTAG