Gchil7132.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7132.t1
Unique Name	Gchil7132.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:309284..310345 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	225117.XP_009337451.1
PFAMs	Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08819
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051726,GO:0065007,GO:0071704,GO:0097472,GO:0099402,GO:0140096,GO:1901564
Evalue	1.02e-131
EggNOG OGs	KOG0600@1\|root,KOG0600@2759\|Eukaryota,37N7D@33090\|Viridiplantae,3G71B@35493\|Streptophyta,4JIH9@91835\|fabids
EC	2.7.11.22,2.7.11.23
Description	Cyclin-dependent kinase
COG category	T
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7132	Gchil7132	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 309284..310345 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7132.t1.stop1	Gchil7132.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 309284..309286 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7132.t1.CDS1	Gchil7132.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 309284..310345 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7132.t1.exon1	Gchil7132.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 309284..310345 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7132.t1.start1	Gchil7132.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 310343..310345 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7132.t1	Gchil7132.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 309284..310345 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:309284..310345-
coding sequence from alignment at tig00004441_pilon:309284..310345-

mRNA sequence

>Gchil7132.t1 ID=Gchil7132.t1|Name=Gchil7132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=354bp
MSAEDDGWDQPINRAPSRKRWRWSRDVTDFEEIEQIGEGTYGQVWMGRDR
QSGEIVALKKVRMDQEKEGFPVTAIRELKMLRSLRHENIVNLKEIVTGQN
QNRNKVQRNKHEIYMVFEYVDHDLTGLMDTPTIHFSEAQVKTYAKQLLSG
LWYCHEREVLHRDIKGSNLLIDNKGNLKIADFGLARTFNDQLKRYTNRVI
TLWYRSPELLLGAEEYGPEVDIWSVGCLIVELLTKKPLFPGKDEPEQLEL
IFSVLGSPTESTWPGWQQLSLAHTVKIEAYAPRLRHKLRHLTPAALNLIE
WLLKLDPKRRPSALEALDHEWFWSKPYPTPREELPKYRSTHEFQAKQRRK
EAR*

spliced messenger RNA

>Gchil7132.t1 ID=Gchil7132.t1|Name=Gchil7132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004441_pilon:309284..310345- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCCGAAGATGACGGGTGGGACCAGCCCATAAACCGTGCACCATC
CCGGAAACGCTGGCGTTGGTCACGCGATGTCACCGACTTTGAGGAAATTG
AACAAATCGGAGAAGGAACTTACGGTCAGGTGTGGATGGGGCGTGATAGA
CAATCCGGTGAGATCGTCGCCCTCAAGAAAGTGCGAATGGATCAGGAGAA
GGAGGGCTTCCCCGTGACAGCTATCAGAGAGTTGAAAATGTTGAGGTCCC
TGCGCCACGAAAACATCGTTAATCTGAAGGAGATTGTCACCGGTCAAAAC
CAAAACCGTAATAAAGTGCAGCGAAACAAGCATGAGATTTATATGGTGTT
TGAGTATGTAGACCACGACCTTACAGGCTTGATGGACACCCCGACAATAC
ATTTCTCTGAGGCGCAGGTAAAGACGTATGCTAAACAGCTCTTGTCAGGG
TTGTGGTACTGTCATGAACGCGAAGTTCTTCATCGTGATATCAAAGGTTC
TAACTTACTTATTGATAACAAAGGGAACCTCAAAATTGCCGATTTCGGCC
TTGCTCGTACATTTAATGACCAATTGAAGCGCTACACAAATCGCGTTATC
ACCTTGTGGTATCGGTCCCCCGAGCTCTTATTGGGGGCCGAGGAGTACGG
CCCGGAAGTTGACATATGGTCAGTGGGGTGTCTCATCGTAGAGCTTTTGA
CAAAAAAGCCTCTGTTCCCAGGAAAAGACGAGCCTGAGCAGCTGGAACTA
ATATTTAGCGTGCTTGGCAGTCCAACGGAGAGCACGTGGCCGGGTTGGCA
GCAACTCAGTCTGGCTCATACCGTCAAAATAGAGGCGTACGCGCCGCGAC
TGCGACACAAACTAAGGCATCTCACTCCTGCTGCTTTAAATCTCATTGAA
TGGCTTCTGAAACTAGATCCCAAGCGACGGCCATCGGCACTTGAAGCTTT
GGATCATGAATGGTTCTGGTCAAAACCATATCCCACCCCCAGGGAAGAGC
TTCCAAAGTATCGTTCAACACATGAATTTCAAGCAAAGCAGAGACGAAAG
GAAGCCCGATGA

protein sequence of Gchil7132.t1

>Gchil7132.t1 ID=Gchil7132.t1|Name=Gchil7132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=354bp
MSAEDDGWDQPINRAPSRKRWRWSRDVTDFEEIEQIGEGTYGQVWMGRDR
QSGEIVALKKVRMDQEKEGFPVTAIRELKMLRSLRHENIVNLKEIVTGQN
QNRNKVQRNKHEIYMVFEYVDHDLTGLMDTPTIHFSEAQVKTYAKQLLSG
LWYCHEREVLHRDIKGSNLLIDNKGNLKIADFGLARTFNDQLKRYTNRVI
TLWYRSPELLLGAEEYGPEVDIWSVGCLIVELLTKKPLFPGKDEPEQLEL
IFSVLGSPTESTWPGWQQLSLAHTVKIEAYAPRLRHKLRHLTPAALNLIE
WLLKLDPKRRPSALEALDHEWFWSKPYPTPREELPKYRSTHEFQAKQRRK
EAR*

mRNA from alignment at tig00004441_pilon:309284..310345-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7132.t1 ID=Gchil7132.t1|Name=Gchil7132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00004441_pilon:309284..310345- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCCGAAGATGACGGGTGGGACCAGCCCATAAACCGTGCACCATC
CCGGAAACGCTGGCGTTGGTCACGCGATGTCACCGACTTTGAGGAAATTG
AACAAATCGGAGAAGGAACTTACGGTCAGGTGTGGATGGGGCGTGATAGA
CAATCCGGTGAGATCGTCGCCCTCAAGAAAGTGCGAATGGATCAGGAGAA
GGAGGGCTTCCCCGTGACAGCTATCAGAGAGTTGAAAATGTTGAGGTCCC
TGCGCCACGAAAACATCGTTAATCTGAAGGAGATTGTCACCGGTCAAAAC
CAAAACCGTAATAAAGTGCAGCGAAACAAGCATGAGATTTATATGGTGTT
TGAGTATGTAGACCACGACCTTACAGGCTTGATGGACACCCCGACAATAC
ATTTCTCTGAGGCGCAGGTAAAGACGTATGCTAAACAGCTCTTGTCAGGG
TTGTGGTACTGTCATGAACGCGAAGTTCTTCATCGTGATATCAAAGGTTC
TAACTTACTTATTGATAACAAAGGGAACCTCAAAATTGCCGATTTCGGCC
TTGCTCGTACATTTAATGACCAATTGAAGCGCTACACAAATCGCGTTATC
ACCTTGTGGTATCGGTCCCCCGAGCTCTTATTGGGGGCCGAGGAGTACGG
CCCGGAAGTTGACATATGGTCAGTGGGGTGTCTCATCGTAGAGCTTTTGA
CAAAAAAGCCTCTGTTCCCAGGAAAAGACGAGCCTGAGCAGCTGGAACTA
ATATTTAGCGTGCTTGGCAGTCCAACGGAGAGCACGTGGCCGGGTTGGCA
GCAACTCAGTCTGGCTCATACCGTCAAAATAGAGGCGTACGCGCCGCGAC
TGCGACACAAACTAAGGCATCTCACTCCTGCTGCTTTAAATCTCATTGAA
TGGCTTCTGAAACTAGATCCCAAGCGACGGCCATCGGCACTTGAAGCTTT
GGATCATGAATGGTTCTGGTCAAAACCATATCCCACCCCCAGGGAAGAGC
TTCCAAAGTATCGTTCAACACATGAATTTCAAGCAAAGCAGAGACGAAAG
GAAGCCCGATGA

Coding sequence (CDS) from alignment at tig00004441_pilon:309284..310345-

>Gchil7132.t1 ID=Gchil7132.t1|Name=Gchil7132.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00004441_pilon:309284..310345- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCCGAAGATGACGGGTGGGACCAGCCCATAAACCGTGCACCATC
CCGGAAACGCTGGCGTTGGTCACGCGATGTCACCGACTTTGAGGAAATTG
AACAAATCGGAGAAGGAACTTACGGTCAGGTGTGGATGGGGCGTGATAGA
CAATCCGGTGAGATCGTCGCCCTCAAGAAAGTGCGAATGGATCAGGAGAA
GGAGGGCTTCCCCGTGACAGCTATCAGAGAGTTGAAAATGTTGAGGTCCC
TGCGCCACGAAAACATCGTTAATCTGAAGGAGATTGTCACCGGTCAAAAC
CAAAACCGTAATAAAGTGCAGCGAAACAAGCATGAGATTTATATGGTGTT
TGAGTATGTAGACCACGACCTTACAGGCTTGATGGACACCCCGACAATAC
ATTTCTCTGAGGCGCAGGTAAAGACGTATGCTAAACAGCTCTTGTCAGGG
TTGTGGTACTGTCATGAACGCGAAGTTCTTCATCGTGATATCAAAGGTTC
TAACTTACTTATTGATAACAAAGGGAACCTCAAAATTGCCGATTTCGGCC
TTGCTCGTACATTTAATGACCAATTGAAGCGCTACACAAATCGCGTTATC
ACCTTGTGGTATCGGTCCCCCGAGCTCTTATTGGGGGCCGAGGAGTACGG
CCCGGAAGTTGACATATGGTCAGTGGGGTGTCTCATCGTAGAGCTTTTGA
CAAAAAAGCCTCTGTTCCCAGGAAAAGACGAGCCTGAGCAGCTGGAACTA
ATATTTAGCGTGCTTGGCAGTCCAACGGAGAGCACGTGGCCGGGTTGGCA
GCAACTCAGTCTGGCTCATACCGTCAAAATAGAGGCGTACGCGCCGCGAC
TGCGACACAAACTAAGGCATCTCACTCCTGCTGCTTTAAATCTCATTGAA
TGGCTTCTGAAACTAGATCCCAAGCGACGGCCATCGGCACTTGAAGCTTT
GGATCATGAATGGTTCTGGTCAAAACCATATCCCACCCCCAGGGAAGAGC
TTCCAAAGTATCGTTCAACACATGAATTTCAAGCAAAGCAGAGACGAAAG
GAAGCCCGATGA