Gchil7131.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7131.t1
Unique Name	Gchil7131.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:308083..309270 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S57_38V6.1
PFAMs	DUF4477
Max annot lvl	35493\|Streptophyta
Evalue	8.75e-07
EggNOG OGs	2C9MA@1\|root,2QSFD@2759\|Eukaryota,37IC0@33090\|Viridiplantae,3GA2Y@35493\|Streptophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7131	Gchil7131	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 308083..309270 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7131.t1.start1	Gchil7131.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 308083..308085 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7131.t1.CDS1	Gchil7131.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 308083..309270 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7131.t1.exon1	Gchil7131.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 308083..309270 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7131.t1.stop1	Gchil7131.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 309268..309270 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7131.t1	Gchil7131.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 308083..309270 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:308083..309270+
coding sequence from alignment at tig00004441_pilon:308083..309270+

mRNA sequence

>Gchil7131.t1 ID=Gchil7131.t1|Name=Gchil7131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp
MDQLRVRLGQLVGVETHPVRIMEHRTFNRLMYRNRNQHRHGFYFRKLEEV
RRILRKIQGHVAWASIRNAVDSKITKKRKSLTAIPLALSSVTHGDLMSLK
ILYNHLVGTVIPSAAEKVTVELVGRSHFLPFAVTMLSILARLHVLEKNIF
KQLQGAIVEVELLLFVQTSSPEEQNLPNSNSGEDRNNEDLGTEIDSSQGS
RVEQKSSGVFAIELKTMPVNSSLPKNLDTTKTSFAPVPSKRRKLCSETEN
VQISESKSLYERISTSAYAIPMNVTFANRAAVSTPQLSSVQRDAATSKVT
NEEQTHFKHNQSGKENDLVAHPINRCVSLQREHPDAIRSERFDAECTMRG
NKASITRPEVLADENTIHKIHTAPVPEVDSSDSEDLDDIFGVLED*

spliced messenger RNA

>Gchil7131.t1 ID=Gchil7131.t1|Name=Gchil7131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004441_pilon:308083..309270+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAGTTGCGGGTCCGACTGGGGCAGCTCGTTGGCGTAGAGACACA
TCCCGTGAGAATTATGGAACATAGAACGTTTAACCGCCTGATGTATCGAA
ACCGTAATCAGCACAGGCACGGGTTCTACTTCAGAAAGTTGGAAGAAGTT
CGTCGAATTCTCAGAAAGATCCAAGGACATGTGGCGTGGGCTTCAATACG
AAACGCTGTTGATTCGAAGATAACAAAAAAACGAAAGTCTTTGACAGCCA
TACCCCTGGCTCTCTCAAGCGTTACACATGGGGACCTCATGTCTCTTAAA
ATTCTTTACAACCATCTAGTGGGCACAGTAATCCCATCAGCTGCAGAAAA
GGTTACTGTTGAGCTCGTGGGTCGTTCCCACTTCTTGCCATTCGCTGTCA
CAATGCTTTCCATCCTAGCGCGATTACACGTGCTGGAAAAGAACATATTC
AAACAATTGCAAGGAGCGATAGTCGAAGTCGAGCTACTACTGTTTGTTCA
AACCTCTTCACCTGAAGAGCAAAATCTGCCTAATTCAAATTCAGGGGAAG
ACAGAAACAACGAAGACCTCGGAACAGAAATTGATTCGTCACAAGGAAGT
CGTGTTGAACAAAAATCCTCTGGCGTGTTTGCCATTGAACTCAAGACGAT
GCCTGTAAACAGCAGTCTACCTAAAAATCTTGACACGACCAAGACCTCAT
TCGCGCCAGTTCCAAGTAAAAGAAGAAAGTTGTGCAGTGAAACGGAAAAT
GTCCAAATCAGTGAAAGCAAATCACTGTACGAGAGAATATCGACGTCGGC
TTACGCAATTCCCATGAACGTCACTTTCGCCAACAGGGCAGCTGTATCAA
CACCGCAATTGAGCTCAGTTCAAAGAGATGCCGCGACGAGTAAAGTAACA
AACGAAGAGCAAACCCATTTCAAACACAATCAAAGTGGTAAGGAAAATGA
CTTAGTTGCCCACCCGATAAATCGCTGTGTTTCTCTGCAAAGAGAACACC
CCGATGCAATTCGTTCTGAAAGGTTTGATGCGGAGTGCACTATGAGGGGA
AATAAAGCCTCAATCACACGTCCCGAGGTGTTGGCAGACGAAAACACAAT
CCACAAAATACACACCGCACCAGTTCCTGAAGTGGACAGCTCAGATTCAG
AAGATTTGGATGATATCTTCGGTGTCTTAGAAGACTAG

protein sequence of Gchil7131.t1

>Gchil7131.t1 ID=Gchil7131.t1|Name=Gchil7131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=396bp
MDQLRVRLGQLVGVETHPVRIMEHRTFNRLMYRNRNQHRHGFYFRKLEEV
RRILRKIQGHVAWASIRNAVDSKITKKRKSLTAIPLALSSVTHGDLMSLK
ILYNHLVGTVIPSAAEKVTVELVGRSHFLPFAVTMLSILARLHVLEKNIF
KQLQGAIVEVELLLFVQTSSPEEQNLPNSNSGEDRNNEDLGTEIDSSQGS
RVEQKSSGVFAIELKTMPVNSSLPKNLDTTKTSFAPVPSKRRKLCSETEN
VQISESKSLYERISTSAYAIPMNVTFANRAAVSTPQLSSVQRDAATSKVT
NEEQTHFKHNQSGKENDLVAHPINRCVSLQREHPDAIRSERFDAECTMRG
NKASITRPEVLADENTIHKIHTAPVPEVDSSDSEDLDDIFGVLED*

mRNA from alignment at tig00004441_pilon:308083..309270+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7131.t1 ID=Gchil7131.t1|Name=Gchil7131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004441_pilon:308083..309270+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAGTTGCGGGTCCGACTGGGGCAGCTCGTTGGCGTAGAGACACA
TCCCGTGAGAATTATGGAACATAGAACGTTTAACCGCCTGATGTATCGAA
ACCGTAATCAGCACAGGCACGGGTTCTACTTCAGAAAGTTGGAAGAAGTT
CGTCGAATTCTCAGAAAGATCCAAGGACATGTGGCGTGGGCTTCAATACG
AAACGCTGTTGATTCGAAGATAACAAAAAAACGAAAGTCTTTGACAGCCA
TACCCCTGGCTCTCTCAAGCGTTACACATGGGGACCTCATGTCTCTTAAA
ATTCTTTACAACCATCTAGTGGGCACAGTAATCCCATCAGCTGCAGAAAA
GGTTACTGTTGAGCTCGTGGGTCGTTCCCACTTCTTGCCATTCGCTGTCA
CAATGCTTTCCATCCTAGCGCGATTACACGTGCTGGAAAAGAACATATTC
AAACAATTGCAAGGAGCGATAGTCGAAGTCGAGCTACTACTGTTTGTTCA
AACCTCTTCACCTGAAGAGCAAAATCTGCCTAATTCAAATTCAGGGGAAG
ACAGAAACAACGAAGACCTCGGAACAGAAATTGATTCGTCACAAGGAAGT
CGTGTTGAACAAAAATCCTCTGGCGTGTTTGCCATTGAACTCAAGACGAT
GCCTGTAAACAGCAGTCTACCTAAAAATCTTGACACGACCAAGACCTCAT
TCGCGCCAGTTCCAAGTAAAAGAAGAAAGTTGTGCAGTGAAACGGAAAAT
GTCCAAATCAGTGAAAGCAAATCACTGTACGAGAGAATATCGACGTCGGC
TTACGCAATTCCCATGAACGTCACTTTCGCCAACAGGGCAGCTGTATCAA
CACCGCAATTGAGCTCAGTTCAAAGAGATGCCGCGACGAGTAAAGTAACA
AACGAAGAGCAAACCCATTTCAAACACAATCAAAGTGGTAAGGAAAATGA
CTTAGTTGCCCACCCGATAAATCGCTGTGTTTCTCTGCAAAGAGAACACC
CCGATGCAATTCGTTCTGAAAGGTTTGATGCGGAGTGCACTATGAGGGGA
AATAAAGCCTCAATCACACGTCCCGAGGTGTTGGCAGACGAAAACACAAT
CCACAAAATACACACCGCACCAGTTCCTGAAGTGGACAGCTCAGATTCAG
AAGATTTGGATGATATCTTCGGTGTCTTAGAAGACTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:308083..309270+

>Gchil7131.t1 ID=Gchil7131.t1|Name=Gchil7131.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00004441_pilon:308083..309270+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAGTTGCGGGTCCGACTGGGGCAGCTCGTTGGCGTAGAGACACA
TCCCGTGAGAATTATGGAACATAGAACGTTTAACCGCCTGATGTATCGAA
ACCGTAATCAGCACAGGCACGGGTTCTACTTCAGAAAGTTGGAAGAAGTT
CGTCGAATTCTCAGAAAGATCCAAGGACATGTGGCGTGGGCTTCAATACG
AAACGCTGTTGATTCGAAGATAACAAAAAAACGAAAGTCTTTGACAGCCA
TACCCCTGGCTCTCTCAAGCGTTACACATGGGGACCTCATGTCTCTTAAA
ATTCTTTACAACCATCTAGTGGGCACAGTAATCCCATCAGCTGCAGAAAA
GGTTACTGTTGAGCTCGTGGGTCGTTCCCACTTCTTGCCATTCGCTGTCA
CAATGCTTTCCATCCTAGCGCGATTACACGTGCTGGAAAAGAACATATTC
AAACAATTGCAAGGAGCGATAGTCGAAGTCGAGCTACTACTGTTTGTTCA
AACCTCTTCACCTGAAGAGCAAAATCTGCCTAATTCAAATTCAGGGGAAG
ACAGAAACAACGAAGACCTCGGAACAGAAATTGATTCGTCACAAGGAAGT
CGTGTTGAACAAAAATCCTCTGGCGTGTTTGCCATTGAACTCAAGACGAT
GCCTGTAAACAGCAGTCTACCTAAAAATCTTGACACGACCAAGACCTCAT
TCGCGCCAGTTCCAAGTAAAAGAAGAAAGTTGTGCAGTGAAACGGAAAAT
GTCCAAATCAGTGAAAGCAAATCACTGTACGAGAGAATATCGACGTCGGC
TTACGCAATTCCCATGAACGTCACTTTCGCCAACAGGGCAGCTGTATCAA
CACCGCAATTGAGCTCAGTTCAAAGAGATGCCGCGACGAGTAAAGTAACA
AACGAAGAGCAAACCCATTTCAAACACAATCAAAGTGGTAAGGAAAATGA
CTTAGTTGCCCACCCGATAAATCGCTGTGTTTCTCTGCAAAGAGAACACC
CCGATGCAATTCGTTCTGAAAGGTTTGATGCGGAGTGCACTATGAGGGGA
AATAAAGCCTCAATCACACGTCCCGAGGTGTTGGCAGACGAAAACACAAT
CCACAAAATACACACCGCACCAGTTCCTGAAGTGGACAGCTCAGATTCAG
AAGATTTGGATGATATCTTCGGTGTCTTAGAAGACTAG