Gchil7128.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7128.t1
Unique NameGchil7128.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:300706..301453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946803.1
PFAMsABC_tran
Max annot lvl3041|Chlorophyta
Evalue1.9e-48
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota,37ZPH@33090|Viridiplantae,34KI0@3041|Chlorophyta
DescriptionABC transporter
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7128Gchil7128Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 300706..301453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7128.t1Gchil7128.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 300706..301453 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7128.t1.start1Gchil7128.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 300706..300708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7128.t1.CDS1Gchil7128.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 300706..301141 +
Gchil7128.t1.CDS2Gchil7128.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 301230..301453 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7128.t1.exon1Gchil7128.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 300706..301141 +
Gchil7128.t1.exon2Gchil7128.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 301230..301453 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7128.t1.intron1Gchil7128.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 301142..301229 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7128.t1.stop1Gchil7128.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 301451..301453 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7128.t1 ID=Gchil7128.t1|Name=Gchil7128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=220bp
MLRVSSIRKSYDVNSDPVFRDLSLQVAHHEILFLVGPSGTGKTSALRCIA
NLDPFDAGIITIDGKSPQQMGFSLWRRHVMYVPQHRVALRGTPADLLSRA
LSFQSYKDVPKNDAEHRLKEYVSICSSMGLTESNVCCQQWSELSGGQAQR
ATVSLCLALRPKVLLLDEPSSSCDLQSTLKMEHAIKQSNIAAVWVSHDAS
QPQRVGGRIQSMLSSGLPS*
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spliced messenger RNA

>Gchil7128.t1 ID=Gchil7128.t1|Name=Gchil7128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00004441_pilon:300706..301453+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGTGTGTCATCCATTCGCAAGTCGTACGACGTAAACTCCGACCC
TGTATTCCGAGATTTGTCTCTGCAGGTAGCCCATCATGAAATACTTTTTC
TGGTTGGTCCCAGCGGTACGGGCAAGACCAGCGCGCTACGCTGCATTGCC
AATCTGGATCCATTCGATGCAGGCATCATCACCATTGACGGCAAGTCACC
GCAACAGATGGGTTTCTCTCTCTGGCGTCGTCATGTCATGTATGTTCCAC
AGCACAGAGTAGCTCTCAGGGGCACTCCGGCCGACTTGCTCTCACGAGCA
CTTTCTTTTCAAAGCTACAAAGATGTACCCAAAAACGATGCAGAGCACCG
GCTCAAAGAATATGTATCTATTTGTAGCTCTATGGGACTCACTGAAAGCA
ATGTTTGTTGTCAGCAGTGGAGTGAATTATCCGGAGGTCAAGCTCAAAGG
GCCACTGTCTCTCTATGCCTTGCTTTGCGGCCGAAGGTTTTACTGCTTGA
CGAACCGTCCAGTAGTTGCGATCTGCAGTCCACGTTGAAGATGGAACATG
CAATCAAGCAATCCAATATTGCTGCTGTATGGGTTTCACACGATGCCTCG
CAGCCTCAGCGCGTTGGGGGTCGTATCCAAAGCATGTTATCATCCGGTCT
ACCAAGTTGA
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protein sequence of Gchil7128.t1

>Gchil7128.t1 ID=Gchil7128.t1|Name=Gchil7128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=220bp
MLRVSSIRKSYDVNSDPVFRDLSLQVAHHEILFLVGPSGTGKTSALRCIA
NLDPFDAGIITIDGKSPQQMGFSLWRRHVMYVPQHRVALRGTPADLLSRA
LSFQSYKDVPKNDAEHRLKEYVSICSSMGLTESNVCCQQWSELSGGQAQR
ATVSLCLALRPKVLLLDEPSSSCDLQSTLKMEHAIKQSNIAAVWVSHDAS
QPQRVGGRIQSMLSSGLPS*
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mRNA from alignment at tig00004441_pilon:300706..301453+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7128.t1 ID=Gchil7128.t1|Name=Gchil7128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=748bp|location=Sequence derived from alignment at tig00004441_pilon:300706..301453+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGTGTGTCATCCATTCGCAAGTCGTACGACGTAAACTCCGACCC
TGTATTCCGAGATTTGTCTCTGCAGGTAGCCCATCATGAAATACTTTTTC
TGGTTGGTCCCAGCGGTACGGGCAAGACCAGCGCGCTACGCTGCATTGCC
AATCTGGATCCATTCGATGCAGGCATCATCACCATTGACGGCAAGTCACC
GCAACAGATGGGTTTCTCTCTCTGGCGTCGTCATGTCATGTATGTTCCAC
AGCACAGAGTAGCTCTCAGGGGCACTCCGGCCGACTTGCTCTCACGAGCA
CTTTCTTTTCAAAGCTACAAAGATGTACCCAAAAACGATGCAGAGCACCG
GCTCAAAGAATATGTATCTATTTGTAGCTCTATGGGACTCACTGAAAGCA
ATGTTTGTTGTCAGCAGTGGAGTGAATTATCCGGAGGTGAGTGATGCGTC
ATTTTTCGACATGCTTGCACTTCGCAGCCTACTATTGTATGACGCTAACA
ACATGTCACCCGTCTGTGGAAAAGGTCAAGCTCAAAGGGCCACTGTCTCT
CTATGCCTTGCTTTGCGGCCGAAGGTTTTACTGCTTGACGAACCGTCCAG
TAGTTGCGATCTGCAGTCCACGTTGAAGATGGAACATGCAATCAAGCAAT
CCAATATTGCTGCTGTATGGGTTTCACACGATGCCTCGCAGCCTCAGCGC
GTTGGGGGTCGTATCCAAAGCATGTTATCATCCGGTCTACCAAGTTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:300706..301453+

>Gchil7128.t1 ID=Gchil7128.t1|Name=Gchil7128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00004441_pilon:300706..301453+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGTGTGTCATCCATTCGCAAGTCGTACGACGTAAACTCCGACCC
TGTATTCCGAGATTTGTCTCTGCAGGTAGCCCATCATGAAATACTTTTTC
TGGTTGGTCCCAGCGGTACGGGCAAGACCAGCGCGCTACGCTGCATTGCC
AATCTGGATCCATTCGATGCAGGCATCATCACCATTGACGGCAAGTCACC
GCAACAGATGGGTTTCTCTCTCTGGCGTCGTCATGTCATGTATGTTCCAC
AGCACAGAGTAGCTCTCAGGGGCACTCCGGCCGACTTGCTCTCACGAGCA
CTTTCTTTTCAAAGCTACAAAGATGTACCCAAAAACGATGCAGAGCACCG
GCTCAAAGAATATGTATCTATTTGTAGCTCTATGGGACTCACTGAAAGCA
ATGTTTGTTGTCAGCAGTGGAGTGAATTATCCGGAGGTCAAGCTCAAAGG
GCCACTGTCTCTCTATGCCTTGCTTTGCGGCCGAAGGTTTTACTGCTTGA
CGAACCGTCCAGTAGTTGCGATCTGCAGTCCACGTTGAAGATGGAACATG
CAATCAAGCAATCCAATATTGCTGCTGTATGGGTTTCACACGATGCCTCG
CAGCCTCAGCGCGTTGGGGGTCGTATCCAAAGCATGTTATCATCCGGTCT
ACCAAGTTGA
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