Gchil7122.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7122.t1
Unique NameGchil7122.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:281984..282811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7122Gchil7122Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 281984..282811 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7122.t1.stop1Gchil7122.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 281984..281986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7122.t1.CDS1Gchil7122.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 281984..282811 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7122.t1.exon1Gchil7122.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 281984..282811 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7122.t1.start1Gchil7122.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 282809..282811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7122.t1Gchil7122.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 281984..282811 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7122.t1 ID=Gchil7122.t1|Name=Gchil7122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=276bp
MADTWEDCVALLRAGASPSEVLPKLRELMNSEPLPQSSQPQAPCSTDISH
SASICRYVIDDVVLQLPYSQPPPTLWTELSNYSDEEFFDSETIIDIMQEF
SPIIIGPPEPEIREMLKEFDLSSVSSEGDVKPIDSKEDEKGDQFTKVSMV
LQKLIERKDTEDVEEFKVPTLSEAEWAWLLSNINLDGAGKDAVHELVHYV
NQPSFSRVILHSILPILADEVEGEDFFELVSITASSADVYSMPHHELVDL
MNVYRSLGSKGTLAQLRILCCDEVQ*
back to top

spliced messenger RNA

>Gchil7122.t1 ID=Gchil7122.t1|Name=Gchil7122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004441_pilon:281984..282811- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATACTTGGGAGGATTGCGTAGCGCTTCTTCGAGCTGGCGCATC
CCCATCAGAAGTATTACCGAAGCTCAGAGAGCTTATGAACTCCGAACCAC
TCCCACAATCGTCGCAGCCTCAAGCTCCATGCAGTACGGACATATCGCAC
TCGGCATCGATTTGTCGCTACGTGATTGATGATGTTGTCCTACAGCTGCC
TTATTCACAACCCCCACCAACTCTGTGGACAGAGCTGTCGAACTACTCCG
ATGAAGAGTTTTTTGATAGTGAAACCATCATAGACATCATGCAAGAGTTT
TCTCCTATAATTATTGGGCCACCGGAACCAGAAATTCGTGAAATGCTGAA
AGAATTTGACCTGTCGAGCGTCTCGAGCGAGGGTGATGTGAAACCGATAG
ATTCGAAGGAAGATGAAAAAGGAGACCAGTTTACAAAAGTTTCAATGGTT
CTTCAAAAACTTATCGAAAGAAAAGACACTGAAGATGTCGAAGAATTTAA
GGTCCCCACGTTGTCGGAAGCAGAATGGGCCTGGTTATTGAGCAATATAA
ACCTTGACGGAGCTGGAAAAGATGCTGTCCATGAGCTTGTTCACTATGTG
AACCAACCGTCTTTTAGTAGGGTCATCCTCCACTCAATACTCCCCATTCT
AGCGGACGAAGTCGAGGGGGAGGACTTCTTTGAACTTGTAAGCATCACTG
CTTCTTCTGCTGATGTGTATTCGATGCCACACCACGAATTAGTCGATCTA
ATGAATGTTTATCGGAGCTTGGGATCAAAGGGGACATTGGCACAATTGCG
AATTCTTTGCTGTGATGAAGTACAGTGA
back to top

protein sequence of Gchil7122.t1

>Gchil7122.t1 ID=Gchil7122.t1|Name=Gchil7122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=276bp
MADTWEDCVALLRAGASPSEVLPKLRELMNSEPLPQSSQPQAPCSTDISH
SASICRYVIDDVVLQLPYSQPPPTLWTELSNYSDEEFFDSETIIDIMQEF
SPIIIGPPEPEIREMLKEFDLSSVSSEGDVKPIDSKEDEKGDQFTKVSMV
LQKLIERKDTEDVEEFKVPTLSEAEWAWLLSNINLDGAGKDAVHELVHYV
NQPSFSRVILHSILPILADEVEGEDFFELVSITASSADVYSMPHHELVDL
MNVYRSLGSKGTLAQLRILCCDEVQ*
back to top

mRNA from alignment at tig00004441_pilon:281984..282811-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7122.t1 ID=Gchil7122.t1|Name=Gchil7122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00004441_pilon:281984..282811- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGATACTTGGGAGGATTGCGTAGCGCTTCTTCGAGCTGGCGCATC
CCCATCAGAAGTATTACCGAAGCTCAGAGAGCTTATGAACTCCGAACCAC
TCCCACAATCGTCGCAGCCTCAAGCTCCATGCAGTACGGACATATCGCAC
TCGGCATCGATTTGTCGCTACGTGATTGATGATGTTGTCCTACAGCTGCC
TTATTCACAACCCCCACCAACTCTGTGGACAGAGCTGTCGAACTACTCCG
ATGAAGAGTTTTTTGATAGTGAAACCATCATAGACATCATGCAAGAGTTT
TCTCCTATAATTATTGGGCCACCGGAACCAGAAATTCGTGAAATGCTGAA
AGAATTTGACCTGTCGAGCGTCTCGAGCGAGGGTGATGTGAAACCGATAG
ATTCGAAGGAAGATGAAAAAGGAGACCAGTTTACAAAAGTTTCAATGGTT
CTTCAAAAACTTATCGAAAGAAAAGACACTGAAGATGTCGAAGAATTTAA
GGTCCCCACGTTGTCGGAAGCAGAATGGGCCTGGTTATTGAGCAATATAA
ACCTTGACGGAGCTGGAAAAGATGCTGTCCATGAGCTTGTTCACTATGTG
AACCAACCGTCTTTTAGTAGGGTCATCCTCCACTCAATACTCCCCATTCT
AGCGGACGAAGTCGAGGGGGAGGACTTCTTTGAACTTGTAAGCATCACTG
CTTCTTCTGCTGATGTGTATTCGATGCCACACCACGAATTAGTCGATCTA
ATGAATGTTTATCGGAGCTTGGGATCAAAGGGGACATTGGCACAATTGCG
AATTCTTTGCTGTGATGAAGTACAGTGA
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:281984..282811-

>Gchil7122.t1 ID=Gchil7122.t1|Name=Gchil7122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=828bp|location=Sequence derived from alignment at tig00004441_pilon:281984..282811- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGATACTTGGGAGGATTGCGTAGCGCTTCTTCGAGCTGGCGCATC
CCCATCAGAAGTATTACCGAAGCTCAGAGAGCTTATGAACTCCGAACCAC
TCCCACAATCGTCGCAGCCTCAAGCTCCATGCAGTACGGACATATCGCAC
TCGGCATCGATTTGTCGCTACGTGATTGATGATGTTGTCCTACAGCTGCC
TTATTCACAACCCCCACCAACTCTGTGGACAGAGCTGTCGAACTACTCCG
ATGAAGAGTTTTTTGATAGTGAAACCATCATAGACATCATGCAAGAGTTT
TCTCCTATAATTATTGGGCCACCGGAACCAGAAATTCGTGAAATGCTGAA
AGAATTTGACCTGTCGAGCGTCTCGAGCGAGGGTGATGTGAAACCGATAG
ATTCGAAGGAAGATGAAAAAGGAGACCAGTTTACAAAAGTTTCAATGGTT
CTTCAAAAACTTATCGAAAGAAAAGACACTGAAGATGTCGAAGAATTTAA
GGTCCCCACGTTGTCGGAAGCAGAATGGGCCTGGTTATTGAGCAATATAA
ACCTTGACGGAGCTGGAAAAGATGCTGTCCATGAGCTTGTTCACTATGTG
AACCAACCGTCTTTTAGTAGGGTCATCCTCCACTCAATACTCCCCATTCT
AGCGGACGAAGTCGAGGGGGAGGACTTCTTTGAACTTGTAAGCATCACTG
CTTCTTCTGCTGATGTGTATTCGATGCCACACCACGAATTAGTCGATCTA
ATGAATGTTTATCGGAGCTTGGGATCAAAGGGGACATTGGCACAATTGCG
AATTCTTTGCTGTGATGAAGTACAGTGA
back to top