Gchil7117.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7117.t1
Unique NameGchil7117.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:242315..243797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009337443.1
PFAMsMito_carr
Max annot lvl35493|Streptophyta
KEGG koko:K15111
KEGG TC2.A.29.18
GOsGO:0000095,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0006855,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0015238,GO:0015805,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0071840,GO:0072348,GO:1901682,GO:1901962
Evalue1.71e-50
EggNOG OGsKOG0768@1|root,KOG0768@2759|Eukaryota,37KH0@33090|Viridiplantae,3G7KW@35493|Streptophyta,4JNC0@91835|fabids
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7117Gchil7117Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 242315..243797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7117.t1Gchil7117.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 242315..243797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7117.t1.stop1Gchil7117.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 242315..242317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7117.t1.CDS1Gchil7117.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 242315..242636 -
Gchil7117.t1.CDS2Gchil7117.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 242757..242935 -
Gchil7117.t1.CDS3Gchil7117.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 243007..243422 -
Gchil7117.t1.CDS4Gchil7117.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 243485..243797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7117.t1.exon1Gchil7117.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 242315..242636 -
Gchil7117.t1.exon2Gchil7117.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 242757..242935 -
Gchil7117.t1.exon3Gchil7117.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 243007..243422 -
Gchil7117.t1.exon4Gchil7117.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 243485..243797 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7117.t1.intron1Gchil7117.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 242637..242756 -
Gchil7117.t1.intron2Gchil7117.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 242936..243006 -
Gchil7117.t1.intron3Gchil7117.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 243423..243484 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7117.t1.start1Gchil7117.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 243795..243797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7117.t1 ID=Gchil7117.t1|Name=Gchil7117.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=410bp
MAIFRKTCASALLCDNSHSASASSRRSILAQHSDAQLASTFAGVTSRILL
HPVDCVKTRLQYFRGRPGSSDASRHLIRFVASEGLPGLYRGIIGALAGVL
PYSMLYMPSYELAQMQLSRLGQEKLLGIRHVVAGSFAGLCGSLVKVPVDV
VKKRLQAGMYPHVGAAVTSIASEGRGLVGGFRQFYTGWRSSIIYDVPYSA
IQFTVLENVKQCVRRLKKSELMGVDHVLVGALTGMITSVITEPLDVIKTR
LMTQRMKGIRPGITMYHGWLHCMRTIVREEGSLALWKGTLPRLVWVGASS
AIWHSLHMIHSLVRWRPCYFFAARDRVPRHSFLKALMQQPEEKLKQLPKE
SRNSPSATGQSFCGSSIFGQAAKKQGNLYLFGLHLIEIKQVPLISLHKAS
EEVFWAQLL*
back to top

spliced messenger RNA

>Gchil7117.t1 ID=Gchil7117.t1|Name=Gchil7117.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00004441_pilon:242315..243797- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATCTTCAGGAAAACATGTGCCAGCGCTCTTCTCTGCGACAACTC
GCACAGTGCATCTGCATCGTCCCGACGCAGTATTCTTGCACAGCATTCTG
ATGCGCAATTGGCCTCTACATTTGCCGGCGTCACCAGTCGAATTCTTCTG
CACCCAGTGGATTGTGTGAAAACGAGGTTGCAATATTTCCGAGGTCGCCC
CGGTTCTAGCGATGCTTCGCGGCACTTGATCCGGTTCGTTGCATCTGAAG
GATTACCGGGCCTTTATCGTGGCATAATTGGCGCTCTGGCAGGAGTGCTG
CCCTATTCAATGCTATACATGCCGAGTTATGAACTTGCTCAAATGCAGCT
TTCTCGTCTTGGCCAAGAGAAGCTATTAGGTATTCGCCATGTTGTTGCAG
GTTCTTTTGCCGGTCTTTGCGGTTCACTTGTAAAGGTGCCCGTTGACGTG
GTCAAGAAGCGTTTGCAAGCAGGTATGTATCCTCATGTGGGTGCGGCTGT
CACATCCATTGCTTCTGAAGGCAGGGGGCTTGTAGGCGGATTTCGTCAGT
TCTACACCGGTTGGCGAAGCTCCATCATATACGATGTGCCTTACAGTGCC
ATTCAGTTTACCGTGCTCGAGAATGTCAAGCAATGCGTGAGACGCCTTAA
GAAAAGTGAACTCATGGGTGTCGACCACGTTCTTGTTGGTGCCCTGACTG
GGATGATTACCTCTGTCATAACTGAGCCACTTGATGTAATTAAGACTAGG
TTAATGACGCAGCGAATGAAAGGCATACGGCCTGGAATAACGATGTACCA
TGGATGGCTCCATTGCATGCGCACAATAGTTCGCGAGGAAGGTTCTCTTG
CTCTGTGGAAAGGAACGCTGCCTCGCCTTGTTTGGGTTGGGGCCAGTAGT
GCAATCTGGCACTCGCTACATATGATTCACTCTCTTGTGCGCTGGAGACC
TTGCTACTTCTTCGCAGCTCGTGACAGAGTTCCAAGGCACAGTTTCCTTA
AGGCTCTCATGCAACAACCGGAAGAAAAATTGAAACAGCTTCCAAAGGAG
TCCAGAAACAGCCCATCTGCTACTGGCCAATCGTTTTGTGGGTCGTCGAT
CTTTGGTCAGGCTGCGAAAAAACAGGGTAACCTCTACTTGTTCGGTTTGC
ATTTGATTGAAATCAAACAAGTTCCTCTGATATCTCTGCATAAGGCAAGT
GAAGAAGTGTTCTGGGCACAGCTCTTGTAG
back to top

protein sequence of Gchil7117.t1

>Gchil7117.t1 ID=Gchil7117.t1|Name=Gchil7117.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=410bp
MAIFRKTCASALLCDNSHSASASSRRSILAQHSDAQLASTFAGVTSRILL
HPVDCVKTRLQYFRGRPGSSDASRHLIRFVASEGLPGLYRGIIGALAGVL
PYSMLYMPSYELAQMQLSRLGQEKLLGIRHVVAGSFAGLCGSLVKVPVDV
VKKRLQAGMYPHVGAAVTSIASEGRGLVGGFRQFYTGWRSSIIYDVPYSA
IQFTVLENVKQCVRRLKKSELMGVDHVLVGALTGMITSVITEPLDVIKTR
LMTQRMKGIRPGITMYHGWLHCMRTIVREEGSLALWKGTLPRLVWVGASS
AIWHSLHMIHSLVRWRPCYFFAARDRVPRHSFLKALMQQPEEKLKQLPKE
SRNSPSATGQSFCGSSIFGQAAKKQGNLYLFGLHLIEIKQVPLISLHKAS
EEVFWAQLL*
back to top

mRNA from alignment at tig00004441_pilon:242315..243797-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7117.t1 ID=Gchil7117.t1|Name=Gchil7117.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1483bp|location=Sequence derived from alignment at tig00004441_pilon:242315..243797- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTATCTTCAGGAAAACATGTGCCAGCGCTCTTCTCTGCGACAACTC
GCACAGTGCATCTGCATCGTCCCGACGCAGTATTCTTGCACAGCATTCTG
ATGCGCAATTGGCCTCTACATTTGCCGGCGTCACCAGTCGAATTCTTCTG
CACCCAGTGGATTGTGTGAAAACGAGGTTGCAATATTTCCGAGGTCGCCC
CGGTTCTAGCGATGCTTCGCGGCACTTGATCCGGTTCGTTGCATCTGAAG
GATTACCGGGCCTTTATCGTGGCATAATTGGCGCTCTGGCAGGAGTGCTG
CCCTATTCAATGCGTGCGTTTCTTCCACCATCCTCTCATTTTTTTCTGTC
TCACTAACAAATCTATCTTCTCTAGTATACATGCCGAGTTATGAACTTGC
TCAAATGCAGCTTTCTCGTCTTGGCCAAGAGAAGCTATTAGGTATTCGCC
ATGTTGTTGCAGGTTCTTTTGCCGGTCTTTGCGGTTCACTTGTAAAGGTG
CCCGTTGACGTGGTCAAGAAGCGTTTGCAAGCAGGTATGTATCCTCATGT
GGGTGCGGCTGTCACATCCATTGCTTCTGAAGGCAGGGGGCTTGTAGGCG
GATTTCGTCAGTTCTACACCGGTTGGCGAAGCTCCATCATATACGATGTG
CCTTACAGTGCCATTCAGTTTACCGTGCTCGAGAATGTCAAGCAATGCGT
GAGACGCCTTAAGAAAAGTGAACTCATGGGTGTCGACCACGTTCTTGTTG
GTGCCCTGACTGGGATGATTACCTCTGTCATAACTGAGCCAGTAAGTTTT
GTATCGTACGTGTCAGCTGTCCAAGGTCAATGACTTTTCTAACTCAACAT
TCCCAAACTCAGCTTGATGTAATTAAGACTAGGTTAATGACGCAGCGAAT
GAAAGGCATACGGCCTGGAATAACGATGTACCATGGATGGCTCCATTGCA
TGCGCACAATAGTTCGCGAGGAAGGTTCTCTTGCTCTGTGGAAAGGAACG
CTGCCTCGCCTTGTTTGGGTTGGGGCCAGTAGTGCAATCTGGTACGGTAC
ATACCAAGCAGTTCGCCATTCCATGAGCCAAAGGAAGCAACAAGGAGCAA
GCAACGAAAGAGATGATTCTTATACCCAAGGAGTGAAATGATGTCATGTA
TGACTTGTCAGGCACTCGCTACATATGATTCACTCTCTTGTGCGCTGGAG
ACCTTGCTACTTCTTCGCAGCTCGTGACAGAGTTCCAAGGCACAGTTTCC
TTAAGGCTCTCATGCAACAACCGGAAGAAAAATTGAAACAGCTTCCAAAG
GAGTCCAGAAACAGCCCATCTGCTACTGGCCAATCGTTTTGTGGGTCGTC
GATCTTTGGTCAGGCTGCGAAAAAACAGGGTAACCTCTACTTGTTCGGTT
TGCATTTGATTGAAATCAAACAAGTTCCTCTGATATCTCTGCATAAGGCA
AGTGAAGAAGTGTTCTGGGCACAGCTCTTGTAG
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:242315..243797-

>Gchil7117.t1 ID=Gchil7117.t1|Name=Gchil7117.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00004441_pilon:242315..243797- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTATCTTCAGGAAAACATGTGCCAGCGCTCTTCTCTGCGACAACTC
GCACAGTGCATCTGCATCGTCCCGACGCAGTATTCTTGCACAGCATTCTG
ATGCGCAATTGGCCTCTACATTTGCCGGCGTCACCAGTCGAATTCTTCTG
CACCCAGTGGATTGTGTGAAAACGAGGTTGCAATATTTCCGAGGTCGCCC
CGGTTCTAGCGATGCTTCGCGGCACTTGATCCGGTTCGTTGCATCTGAAG
GATTACCGGGCCTTTATCGTGGCATAATTGGCGCTCTGGCAGGAGTGCTG
CCCTATTCAATGCTATACATGCCGAGTTATGAACTTGCTCAAATGCAGCT
TTCTCGTCTTGGCCAAGAGAAGCTATTAGGTATTCGCCATGTTGTTGCAG
GTTCTTTTGCCGGTCTTTGCGGTTCACTTGTAAAGGTGCCCGTTGACGTG
GTCAAGAAGCGTTTGCAAGCAGGTATGTATCCTCATGTGGGTGCGGCTGT
CACATCCATTGCTTCTGAAGGCAGGGGGCTTGTAGGCGGATTTCGTCAGT
TCTACACCGGTTGGCGAAGCTCCATCATATACGATGTGCCTTACAGTGCC
ATTCAGTTTACCGTGCTCGAGAATGTCAAGCAATGCGTGAGACGCCTTAA
GAAAAGTGAACTCATGGGTGTCGACCACGTTCTTGTTGGTGCCCTGACTG
GGATGATTACCTCTGTCATAACTGAGCCACTTGATGTAATTAAGACTAGG
TTAATGACGCAGCGAATGAAAGGCATACGGCCTGGAATAACGATGTACCA
TGGATGGCTCCATTGCATGCGCACAATAGTTCGCGAGGAAGGTTCTCTTG
CTCTGTGGAAAGGAACGCTGCCTCGCCTTGTTTGGGTTGGGGCCAGTAGT
GCAATCTGGCACTCGCTACATATGATTCACTCTCTTGTGCGCTGGAGACC
TTGCTACTTCTTCGCAGCTCGTGACAGAGTTCCAAGGCACAGTTTCCTTA
AGGCTCTCATGCAACAACCGGAAGAAAAATTGAAACAGCTTCCAAAGGAG
TCCAGAAACAGCCCATCTGCTACTGGCCAATCGTTTTGTGGGTCGTCGAT
CTTTGGTCAGGCTGCGAAAAAACAGGGTAACCTCTACTTGTTCGGTTTGC
ATTTGATTGAAATCAAACAAGTTCCTCTGATATCTCTGCATAAGGCAAGT
GAAGAAGTGTTCTGGGCACAGCTCTTGTAG
back to top