Gchil7114.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7114.t1
Unique NameGchil7114.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:236599..237013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog50452.A0A087G442
PFAMsPC-Esterase,PMR5N
Max annot lvl35493|Streptophyta
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0005975,GO:0005976,GO:0006073,GO:0008150,GO:0008152,GO:0008374,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009827,GO:0009987,GO:0010383,GO:0010393,GO:0010410,GO:0012505,GO:0016020,GO:0016043,GO:0016051,GO:0016407,GO:0016413,GO:0016740,GO:0016746,GO:0016747,GO:0017144,GO:0030243,GO:0030244,GO:0033692,GO:0034637,GO:0034645,GO:0042545,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0045488,GO:0045489,GO:0045491,GO:0045492,GO:0051273,GO:0051274,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:1901576,GO:1990538
Evalue4.1e-06
EggNOG OGs28K4X@1|root,2QT29@2759|Eukaryota,37P3W@33090|Viridiplantae,3GAVA@35493|Streptophyta,3HQI3@3699|Brassicales
DescriptionProtein trichome birefringence-like 3
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7114Gchil7114Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 236599..237013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7114.t1Gchil7114.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 236599..237013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7114.t1.stop1Gchil7114.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 236599..236601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7114.t1.CDS1Gchil7114.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 236599..236721 -
Gchil7114.t1.CDS2Gchil7114.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 236819..237013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7114.t1.exon1Gchil7114.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 236599..236721 -
Gchil7114.t1.exon2Gchil7114.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 236819..237013 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7114.t1.intron1Gchil7114.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 236722..236818 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7114.t1.start1Gchil7114.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 237011..237013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7114.t1 ID=Gchil7114.t1|Name=Gchil7114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MGPGGLFSRIAQWLASEVIVKGLANNPAFQRFAVRSSQQAKELSKSAAEA
AKNLSESESFVQMKKESEALRNQARDFASALREEIEESVRRAGQGKDSQS
PPTRK*
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spliced messenger RNA

>Gchil7114.t1 ID=Gchil7114.t1|Name=Gchil7114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00004441_pilon:236599..237013- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACCGGGGGGCTTGTTTTCCAGAATTGCTCAATGGCTAGCCAGTGA
AGTAATTGTCAAGGGTTTGGCGAACAACCCTGCTTTTCAGCGTTTTGCTG
TTCGCTCCTCTCAACAAGCCAAGGAATTGTCGAAATCTGCAGCAGAAGCC
GCAAAGAACTTGTCAGAGAGTGAGAGTTTTGTTCAAATGAAGAAGGAATC
TGAGGCACTTCGGAATCAAGCGCGGGATTTTGCAAGTGCACTTCGAGAAG
AAATTGAGGAGAGTGTTCGAAGGGCTGGACAAGGAAAGGATTCACAATCA
CCGCCAACGCGAAAGTGA
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protein sequence of Gchil7114.t1

>Gchil7114.t1 ID=Gchil7114.t1|Name=Gchil7114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MGPGGLFSRIAQWLASEVIVKGLANNPAFQRFAVRSSQQAKELSKSAAEA
AKNLSESESFVQMKKESEALRNQARDFASALREEIEESVRRAGQGKDSQS
PPTRK*
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mRNA from alignment at tig00004441_pilon:236599..237013-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7114.t1 ID=Gchil7114.t1|Name=Gchil7114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=415bp|location=Sequence derived from alignment at tig00004441_pilon:236599..237013- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACCGGGGGGCTTGTTTTCCAGAATTGCTCAATGGCTAGCCAGTGA
AGTAATTGTCAAGGGTTTGGCGAACAACCCTGCTTTTCAGCGTTTTGCTG
TTCGCTCCTCTCAACAAGCCAAGGAATTGTCGAAATCTGCAGCAGAAGCC
GCAAAGAACTTGTCAGAGAGTGAGAGTTTTGTTCAAATGAAGAAGGTAAT
GTTATTTCATGCCGACTGCAATTTCGCTTTGTTTGCGATAAATCTCCGCG
GTGTGTTAACTAAAACTCATTCCACTGCGAACGTCAATTTAGGAATCTGA
GGCACTTCGGAATCAAGCGCGGGATTTTGCAAGTGCACTTCGAGAAGAAA
TTGAGGAGAGTGTTCGAAGGGCTGGACAAGGAAAGGATTCACAATCACCG
CCAACGCGAAAGTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:236599..237013-

>Gchil7114.t1 ID=Gchil7114.t1|Name=Gchil7114.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00004441_pilon:236599..237013- (Gracilaria chilensis NLEC103_M9 male)
ATGGGACCGGGGGGCTTGTTTTCCAGAATTGCTCAATGGCTAGCCAGTGA
AGTAATTGTCAAGGGTTTGGCGAACAACCCTGCTTTTCAGCGTTTTGCTG
TTCGCTCCTCTCAACAAGCCAAGGAATTGTCGAAATCTGCAGCAGAAGCC
GCAAAGAACTTGTCAGAGAGTGAGAGTTTTGTTCAAATGAAGAAGGAATC
TGAGGCACTTCGGAATCAAGCGCGGGATTTTGCAAGTGCACTTCGAGAAG
AAATTGAGGAGAGTGTTCGAAGGGCTGGACAAGGAAAGGATTCACAATCA
CCGCCAACGCGAAAGTGA
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