Gchil7112.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7112.t1
Unique NameGchil7112.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:231339..232823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709240.1
Preferred nameUGP2
PFAMsUDPGP
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00963,ko:K02987,ko:K17260,ko:K17491
KEGG ReactionR00289
KEGG Pathwayko00040,ko00052,ko00500,ko00520,ko01100,ko01130,ko03010,ko04138,ko04212,ko04530,ko04922,map00040,map00052,map00500,map00520,map01100,map01130,map03010,map04138,map04212,map04530,map04922
KEGG ModuleM00129,M00177,M00179,M00361,M00362,M00549
GOsGO:0000045,GO:0000166,GO:0000271,GO:0003674,GO:0003824,GO:0003983,GO:0005488,GO:0005515,GO:0005536,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0005984,GO:0005985,GO:0005991,GO:0005992,GO:0006011,GO:0006065,GO:0006073,GO:0006077,GO:0006078,GO:0006082,GO:0006091,GO:0006112,GO:0006139,GO:0006464,GO:0006486,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006950,GO:0006970,GO:0006996,GO:0007033,GO:0007154,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009226,GO:0009250,GO:0009267,GO:0009277,GO:0009311,GO:0009312,GO:0009555,GO:0009605,GO:0009628,GO:0009651,GO:0009986,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010494,GO:0010941,GO:0010942,GO:0015980,GO:0016020,GO:0016036,GO:0016043,GO:0016051,GO:0016053,GO:0016236,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019103,GO:0019255,GO:0019438,GO:0019538,GO:0019637,GO:0019752,GO:0022607,GO:0030243,GO:0030244,GO:0030246,GO:0030312,GO:0030445,GO:0030587,GO:0031154,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0032553,GO:0032557,GO:0032991,GO:0033036,GO:0033037,GO:0033554,GO:0033692,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036094,GO:0036211,GO:0036296,GO:0036464,GO:0042221,GO:0042545,GO:0042594,GO:0042802,GO:0042995,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043413,GO:0043436,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046351,GO:0046394,GO:0046398,GO:0046483,GO:0046686,GO:0048029,GO:0048229,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051273,GO:0051274,GO:0051641,GO:0051703,GO:0051704,GO:0051716,GO:0051748,GO:0052386,GO:0052543,GO:0052545,GO:0055086,GO:0055093,GO:0055114,GO:0061919,GO:0065007,GO:0070085,GO:0070482,GO:0070569,GO:0070727,GO:0070925,GO:0071496,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0090406,GO:0090702,GO:0097159,GO:0097367,GO:0099120,GO:0120025,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905037,GO:1990904
Evalue7.58e-235
EggNOG OGsCOG4284@1|root,KOG2638@2759|Eukaryota
EC2.7.7.9
DescriptionUTP:glucose-1-phosphate uridylyltransferase activity
COG categoryG
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01009,ko03011,ko03400,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7112Gchil7112Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 231339..232823 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7112.t1.start1Gchil7112.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 231339..231341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7112.t1.CDS1Gchil7112.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 231339..232823 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7112.t1.exon1Gchil7112.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 231339..232823 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7112.t1.stop1Gchil7112.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 232821..232823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7112.t1Gchil7112.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 231339..232823 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7112.t1 ID=Gchil7112.t1|Name=Gchil7112.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp
MNDSRSLQDFKGVMDKSAASSVGEKLKVMNQMTVNELEKMTESETAGFLE
LYGRYMSERSKKAEIKWDLIQQPSDNMLQRYNTLHEPATAEETESLLSKL
AVLKLNGGLGTSMGCKGPKSVIEVRDDTTFLDLIVQQIGQLNKTHPKASV
PLLLMNSFNTDSETAKIIRKYQDTSVTITTFQQSRYPRIVKESLEPMPLT
HEGYAHEDWYPPGHGDFFQSIFASGLVDTLLAQGKEYIFVSNVDNLGATV
DLNILKNVVDREVEYCMELTDKTRADIKGGTIISYDGKVSLLEVAQVPSK
YIEEFKSVSKFKVFNTNNIWVSLRAIKRVMQSGEMKLDIIVNNKEVKGTK
VVQLESAIGAAIGYFNNACGVNVPRSRFLPVKSTSDLLLIQSNMYNLKSG
SLVMNPARQFATTPVIKLGKEFKKVAQYLERLGSIPDILELDHLTVSGDV
YFGANTTLKGTVIVVANPGNTIMIPEGSVLENKVVVGSLHVIPH*
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spliced messenger RNA

>Gchil7112.t1 ID=Gchil7112.t1|Name=Gchil7112.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00004441_pilon:231339..232823+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGATTCCAGATCGTTGCAAGACTTCAAGGGCGTCATGGACAAATC
CGCCGCCTCCAGCGTGGGGGAAAAACTCAAAGTCATGAACCAGATGACTG
TAAACGAGCTCGAAAAGATGACCGAGTCCGAGACTGCTGGCTTCCTCGAG
TTGTACGGCCGCTACATGAGCGAGCGTTCCAAGAAGGCCGAAATCAAGTG
GGATCTCATTCAACAGCCCAGCGACAACATGTTGCAGAGGTATAATACGC
TACACGAACCTGCCACCGCTGAAGAAACCGAATCCCTTTTGTCCAAGCTT
GCTGTCCTTAAACTTAATGGCGGTCTTGGAACTTCCATGGGCTGCAAGGG
ACCCAAGAGCGTCATAGAGGTGCGTGATGACACCACGTTTTTGGATCTCA
TCGTTCAGCAGATTGGCCAACTCAACAAGACCCATCCCAAAGCCAGTGTT
CCACTCCTGCTCATGAACTCTTTTAACACTGATTCCGAGACCGCCAAGAT
TATCCGGAAATATCAGGATACCAGCGTCACTATCACAACCTTCCAGCAAT
CTCGCTACCCAAGGATTGTGAAGGAGTCGCTCGAACCGATGCCCCTCACT
CATGAGGGCTATGCGCATGAAGACTGGTACCCGCCAGGTCACGGAGATTT
CTTCCAATCCATCTTCGCTTCAGGCTTAGTCGATACCCTTCTTGCTCAAG
GCAAAGAATACATTTTTGTCTCAAACGTTGACAATCTTGGTGCTACCGTT
GACCTTAACATTCTTAAGAACGTCGTCGACCGTGAAGTCGAGTACTGCAT
GGAACTCACGGACAAGACTCGTGCCGACATCAAGGGTGGTACCATTATCT
CCTACGACGGAAAAGTGTCTCTGCTGGAGGTCGCCCAAGTGCCGAGCAAG
TACATCGAAGAATTCAAGTCTGTTTCCAAATTCAAGGTGTTTAACACCAA
CAATATTTGGGTCTCTTTGCGAGCGATCAAGCGTGTCATGCAGTCTGGCG
AGATGAAACTCGACATCATTGTCAACAACAAGGAAGTCAAGGGCACCAAG
GTTGTGCAACTTGAGTCTGCTATTGGAGCGGCCATCGGCTACTTCAACAA
CGCATGTGGTGTCAACGTTCCTCGTTCTCGTTTTCTTCCTGTCAAGTCAA
CCTCTGATCTCTTACTCATTCAGAGTAATATGTACAACCTCAAGTCCGGG
TCCCTTGTTATGAACCCTGCTCGCCAGTTTGCTACAACTCCGGTTATAAA
ACTTGGAAAGGAATTCAAGAAGGTGGCACAATATCTTGAGCGTCTCGGTA
GCATTCCCGATATTTTGGAGCTCGACCATCTCACTGTTTCAGGGGATGTC
TATTTCGGAGCGAATACTACTCTGAAGGGTACTGTAATCGTGGTAGCAAA
TCCTGGAAACACCATCATGATTCCAGAAGGATCTGTTCTCGAAAACAAGG
TTGTGGTCGGTTCACTCCACGTGATTCCGCATTAA
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protein sequence of Gchil7112.t1

>Gchil7112.t1 ID=Gchil7112.t1|Name=Gchil7112.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=495bp
MNDSRSLQDFKGVMDKSAASSVGEKLKVMNQMTVNELEKMTESETAGFLE
LYGRYMSERSKKAEIKWDLIQQPSDNMLQRYNTLHEPATAEETESLLSKL
AVLKLNGGLGTSMGCKGPKSVIEVRDDTTFLDLIVQQIGQLNKTHPKASV
PLLLMNSFNTDSETAKIIRKYQDTSVTITTFQQSRYPRIVKESLEPMPLT
HEGYAHEDWYPPGHGDFFQSIFASGLVDTLLAQGKEYIFVSNVDNLGATV
DLNILKNVVDREVEYCMELTDKTRADIKGGTIISYDGKVSLLEVAQVPSK
YIEEFKSVSKFKVFNTNNIWVSLRAIKRVMQSGEMKLDIIVNNKEVKGTK
VVQLESAIGAAIGYFNNACGVNVPRSRFLPVKSTSDLLLIQSNMYNLKSG
SLVMNPARQFATTPVIKLGKEFKKVAQYLERLGSIPDILELDHLTVSGDV
YFGANTTLKGTVIVVANPGNTIMIPEGSVLENKVVVGSLHVIPH*
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mRNA from alignment at tig00004441_pilon:231339..232823+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7112.t1 ID=Gchil7112.t1|Name=Gchil7112.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00004441_pilon:231339..232823+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGATTCCAGATCGTTGCAAGACTTCAAGGGCGTCATGGACAAATC
CGCCGCCTCCAGCGTGGGGGAAAAACTCAAAGTCATGAACCAGATGACTG
TAAACGAGCTCGAAAAGATGACCGAGTCCGAGACTGCTGGCTTCCTCGAG
TTGTACGGCCGCTACATGAGCGAGCGTTCCAAGAAGGCCGAAATCAAGTG
GGATCTCATTCAACAGCCCAGCGACAACATGTTGCAGAGGTATAATACGC
TACACGAACCTGCCACCGCTGAAGAAACCGAATCCCTTTTGTCCAAGCTT
GCTGTCCTTAAACTTAATGGCGGTCTTGGAACTTCCATGGGCTGCAAGGG
ACCCAAGAGCGTCATAGAGGTGCGTGATGACACCACGTTTTTGGATCTCA
TCGTTCAGCAGATTGGCCAACTCAACAAGACCCATCCCAAAGCCAGTGTT
CCACTCCTGCTCATGAACTCTTTTAACACTGATTCCGAGACCGCCAAGAT
TATCCGGAAATATCAGGATACCAGCGTCACTATCACAACCTTCCAGCAAT
CTCGCTACCCAAGGATTGTGAAGGAGTCGCTCGAACCGATGCCCCTCACT
CATGAGGGCTATGCGCATGAAGACTGGTACCCGCCAGGTCACGGAGATTT
CTTCCAATCCATCTTCGCTTCAGGCTTAGTCGATACCCTTCTTGCTCAAG
GCAAAGAATACATTTTTGTCTCAAACGTTGACAATCTTGGTGCTACCGTT
GACCTTAACATTCTTAAGAACGTCGTCGACCGTGAAGTCGAGTACTGCAT
GGAACTCACGGACAAGACTCGTGCCGACATCAAGGGTGGTACCATTATCT
CCTACGACGGAAAAGTGTCTCTGCTGGAGGTCGCCCAAGTGCCGAGCAAG
TACATCGAAGAATTCAAGTCTGTTTCCAAATTCAAGGTGTTTAACACCAA
CAATATTTGGGTCTCTTTGCGAGCGATCAAGCGTGTCATGCAGTCTGGCG
AGATGAAACTCGACATCATTGTCAACAACAAGGAAGTCAAGGGCACCAAG
GTTGTGCAACTTGAGTCTGCTATTGGAGCGGCCATCGGCTACTTCAACAA
CGCATGTGGTGTCAACGTTCCTCGTTCTCGTTTTCTTCCTGTCAAGTCAA
CCTCTGATCTCTTACTCATTCAGAGTAATATGTACAACCTCAAGTCCGGG
TCCCTTGTTATGAACCCTGCTCGCCAGTTTGCTACAACTCCGGTTATAAA
ACTTGGAAAGGAATTCAAGAAGGTGGCACAATATCTTGAGCGTCTCGGTA
GCATTCCCGATATTTTGGAGCTCGACCATCTCACTGTTTCAGGGGATGTC
TATTTCGGAGCGAATACTACTCTGAAGGGTACTGTAATCGTGGTAGCAAA
TCCTGGAAACACCATCATGATTCCAGAAGGATCTGTTCTCGAAAACAAGG
TTGTGGTCGGTTCACTCCACGTGATTCCGCATTAA
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Coding sequence (CDS) from alignment at tig00004441_pilon:231339..232823+

>Gchil7112.t1 ID=Gchil7112.t1|Name=Gchil7112.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00004441_pilon:231339..232823+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACGATTCCAGATCGTTGCAAGACTTCAAGGGCGTCATGGACAAATC
CGCCGCCTCCAGCGTGGGGGAAAAACTCAAAGTCATGAACCAGATGACTG
TAAACGAGCTCGAAAAGATGACCGAGTCCGAGACTGCTGGCTTCCTCGAG
TTGTACGGCCGCTACATGAGCGAGCGTTCCAAGAAGGCCGAAATCAAGTG
GGATCTCATTCAACAGCCCAGCGACAACATGTTGCAGAGGTATAATACGC
TACACGAACCTGCCACCGCTGAAGAAACCGAATCCCTTTTGTCCAAGCTT
GCTGTCCTTAAACTTAATGGCGGTCTTGGAACTTCCATGGGCTGCAAGGG
ACCCAAGAGCGTCATAGAGGTGCGTGATGACACCACGTTTTTGGATCTCA
TCGTTCAGCAGATTGGCCAACTCAACAAGACCCATCCCAAAGCCAGTGTT
CCACTCCTGCTCATGAACTCTTTTAACACTGATTCCGAGACCGCCAAGAT
TATCCGGAAATATCAGGATACCAGCGTCACTATCACAACCTTCCAGCAAT
CTCGCTACCCAAGGATTGTGAAGGAGTCGCTCGAACCGATGCCCCTCACT
CATGAGGGCTATGCGCATGAAGACTGGTACCCGCCAGGTCACGGAGATTT
CTTCCAATCCATCTTCGCTTCAGGCTTAGTCGATACCCTTCTTGCTCAAG
GCAAAGAATACATTTTTGTCTCAAACGTTGACAATCTTGGTGCTACCGTT
GACCTTAACATTCTTAAGAACGTCGTCGACCGTGAAGTCGAGTACTGCAT
GGAACTCACGGACAAGACTCGTGCCGACATCAAGGGTGGTACCATTATCT
CCTACGACGGAAAAGTGTCTCTGCTGGAGGTCGCCCAAGTGCCGAGCAAG
TACATCGAAGAATTCAAGTCTGTTTCCAAATTCAAGGTGTTTAACACCAA
CAATATTTGGGTCTCTTTGCGAGCGATCAAGCGTGTCATGCAGTCTGGCG
AGATGAAACTCGACATCATTGTCAACAACAAGGAAGTCAAGGGCACCAAG
GTTGTGCAACTTGAGTCTGCTATTGGAGCGGCCATCGGCTACTTCAACAA
CGCATGTGGTGTCAACGTTCCTCGTTCTCGTTTTCTTCCTGTCAAGTCAA
CCTCTGATCTCTTACTCATTCAGAGTAATATGTACAACCTCAAGTCCGGG
TCCCTTGTTATGAACCCTGCTCGCCAGTTTGCTACAACTCCGGTTATAAA
ACTTGGAAAGGAATTCAAGAAGGTGGCACAATATCTTGAGCGTCTCGGTA
GCATTCCCGATATTTTGGAGCTCGACCATCTCACTGTTTCAGGGGATGTC
TATTTCGGAGCGAATACTACTCTGAAGGGTACTGTAATCGTGGTAGCAAA
TCCTGGAAACACCATCATGATTCCAGAAGGATCTGTTCTCGAAAACAAGG
TTGTGGTCGGTTCACTCCACGTGATTCCGCATTAA
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