Gchil7111.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7111.t1
Unique Name	Gchil7111.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	725

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:228407..230581 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72664.XP_006395709.1
PFAMs	PPR,PPR_2
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Evalue	1.37e-21
EggNOG OGs	KOG4197@1\|root,KOG4197@2759\|Eukaryota,37K71@33090\|Viridiplantae,3GFIF@35493\|Streptophyta,3HZ3B@3699\|Brassicales
Description	Pentatricopeptide repeat domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7111	Gchil7111	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 228407..230581 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7111.t1.stop1	Gchil7111.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 228407..228409 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7111.t1.CDS1	Gchil7111.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 228407..230581 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7111.t1.exon1	Gchil7111.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 228407..230581 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7111.t1.start1	Gchil7111.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 230579..230581 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7111.t1	Gchil7111.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 228407..230581 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:228407..230581-
coding sequence from alignment at tig00004441_pilon:228407..230581-

mRNA sequence

>Gchil7111.t1 ID=Gchil7111.t1|Name=Gchil7111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=725bp
MAVLVSEAQMPTIGKRHPCRHGAAPPMAAFLPPLGLPRPRCDRVVPTIAS
APSPICLAASPPRSFPPDSHSDLRHAIHECAPSRILPLLTRRLAQSDPPV
SPQLWRSALNACLTARNPNAVAAVLFRGLDSPLAVSLHISSFVHPLKFLA
SISKWNLLFPLLDSMWLVGNAVAPDEKLIVTLANIAVNRDNYRVCLKLFH
LMRHHGIEMGPFSYSVLLKSHGRARNVVAVKSALSKICSSKLKVDSVLLN
SAVDALVRCNDLSAAMRLIAEDDNKPLLDVSSYNTIIKGFASRGLVSDAF
KVVDTMKAAQCTPNQVTTNTLLSACAHAGHFDQAWSLIDNIDFEAPKAKS
VTHVPKALSSPQQRRGAKHNSSSSIQLTIAITSLISGLAQAGRVDEALEL
FSRMKEIKIPPSSITYASLISACFRCNATGRARELFQSFIGDDVISIEVC
NAYMSGLCHSRQEENLKQAAAVLDDMLTRKIHIFPDIHSFNCLLDAWVSI
RNFEQAELIMELMQANKIRPSITSYTILLRGYSDTGQYGDAKRAFRELSR
RRLRPDRIALNAFINVCVRSGDLRAAERVVAQMEQRKGAISPSAKSYSPI
IASYFRHGKFDEGWQLYERMRSQKIPLNEYLVQYMTIQLSQNNDIQGNTD
QVQYCAQLLKDGLADGVNVKMLRRCRKKMLGELRSKRNREALNQLANEPE
FRLVSEQIFDRHGWNQIDSGWRVF*

spliced messenger RNA

>Gchil7111.t1 ID=Gchil7111.t1|Name=Gchil7111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2175bp|location=Sequence derived from alignment at tig00004441_pilon:228407..230581- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGTGCTCGTTTCGGAGGCTCAAATGCCCACTATCGGCAAACGACA
CCCCTGTCGGCACGGCGCTGCCCCGCCAATGGCCGCCTTCCTTCCGCCGC
TCGGTCTCCCGCGCCCGCGTTGCGACCGTGTGGTGCCCACCATCGCCTCT
GCGCCATCACCCATCTGTCTGGCCGCCAGCCCCCCTCGCTCTTTCCCGCC
TGACTCCCACTCCGACTTGCGCCACGCCATCCACGAATGCGCGCCCTCCC
GCATCCTCCCTCTTCTCACCCGCCGCCTGGCCCAGAGTGACCCCCCCGTT
TCCCCTCAGCTGTGGCGCAGTGCCCTCAACGCCTGTCTCACCGCGCGGAA
TCCTAATGCAGTTGCTGCCGTGCTGTTTCGAGGCTTGGATTCTCCCCTCG
CTGTGAGCTTGCACATTTCATCCTTCGTGCACCCGCTCAAGTTTCTCGCA
TCCATCTCCAAATGGAATCTTCTCTTTCCCTTGCTTGACAGCATGTGGCT
GGTAGGAAATGCTGTCGCCCCAGATGAAAAGCTCATCGTTACTCTGGCCA
ACATCGCTGTGAATCGAGACAATTACCGCGTATGTCTCAAGCTCTTCCAT
CTCATGCGTCATCACGGAATCGAAATGGGGCCGTTTTCGTACTCCGTTCT
TCTCAAGTCACATGGTCGCGCAAGAAACGTAGTCGCCGTCAAGTCCGCGC
TTTCCAAAATCTGCAGCAGCAAACTGAAAGTGGACTCGGTACTGCTCAAC
TCCGCCGTCGACGCCCTTGTGCGATGCAATGATCTCAGTGCCGCAATGCG
TTTGATTGCGGAAGACGACAACAAGCCCCTGCTGGACGTCTCCAGCTACA
ATACCATCATCAAAGGCTTTGCGAGTCGCGGGCTCGTTTCAGATGCTTTC
AAAGTCGTAGATACAATGAAAGCCGCCCAATGCACCCCAAATCAAGTTAC
CACAAACACCCTTCTTTCCGCCTGTGCCCATGCTGGCCATTTTGACCAGG
CATGGAGCCTCATCGATAACATCGATTTTGAAGCTCCGAAAGCCAAATCT
GTTACACATGTACCTAAAGCATTATCTTCTCCTCAGCAGCGGAGAGGGGC
AAAGCACAATTCATCCTCCTCAATCCAATTGACAATAGCAATAACTTCTC
TTATTTCCGGACTTGCACAAGCTGGTAGAGTTGATGAGGCACTCGAGCTC
TTCAGCCGAATGAAAGAAATCAAAATACCACCATCTTCTATTACATACGC
GTCTCTCATTTCAGCATGCTTCCGATGCAATGCAACTGGACGTGCTAGGG
AGCTTTTCCAGTCATTTATTGGTGATGATGTGATCTCCATCGAAGTGTGT
AACGCATACATGTCTGGCCTTTGCCATTCCAGACAAGAAGAGAACCTCAA
ACAGGCAGCAGCTGTTCTTGATGATATGCTGACCCGAAAAATCCACATTT
TCCCGGACATTCATAGCTTTAACTGCCTGTTAGACGCTTGGGTTAGTATA
AGAAACTTTGAACAGGCAGAACTTATCATGGAGCTCATGCAAGCGAACAA
GATTCGCCCCTCTATAACGTCGTACACGATTCTTTTGAGGGGCTACAGTG
ATACTGGTCAGTATGGAGATGCTAAGCGAGCTTTTCGTGAGCTTTCTCGG
AGGAGATTGCGACCTGATCGCATTGCGCTGAACGCATTCATAAACGTTTG
CGTACGATCAGGCGATCTGAGAGCAGCAGAGCGTGTCGTTGCTCAAATGG
AACAACGAAAAGGAGCAATCAGTCCAAGTGCAAAGAGTTACAGCCCAATT
ATAGCTTCATATTTTCGTCATGGAAAGTTCGACGAAGGTTGGCAACTTTA
TGAGCGAATGCGCTCACAAAAAATTCCGCTAAACGAGTATCTTGTTCAAT
ACATGACCATTCAACTTTCCCAGAACAATGATATACAAGGAAACACAGAC
CAAGTGCAATACTGCGCCCAACTCCTGAAGGACGGGCTAGCTGACGGTGT
GAACGTTAAGATGCTTCGAAGGTGCCGAAAAAAAATGTTGGGGGAGCTCA
GGAGCAAACGCAACAGGGAAGCACTCAATCAGTTGGCCAATGAACCAGAG
TTTCGACTTGTTAGCGAACAAATCTTTGATAGGCATGGCTGGAATCAAAT
TGACTCTGGGTGGCGTGTATTTTAG

protein sequence of Gchil7111.t1

>Gchil7111.t1 ID=Gchil7111.t1|Name=Gchil7111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=725bp
MAVLVSEAQMPTIGKRHPCRHGAAPPMAAFLPPLGLPRPRCDRVVPTIAS
APSPICLAASPPRSFPPDSHSDLRHAIHECAPSRILPLLTRRLAQSDPPV
SPQLWRSALNACLTARNPNAVAAVLFRGLDSPLAVSLHISSFVHPLKFLA
SISKWNLLFPLLDSMWLVGNAVAPDEKLIVTLANIAVNRDNYRVCLKLFH
LMRHHGIEMGPFSYSVLLKSHGRARNVVAVKSALSKICSSKLKVDSVLLN
SAVDALVRCNDLSAAMRLIAEDDNKPLLDVSSYNTIIKGFASRGLVSDAF
KVVDTMKAAQCTPNQVTTNTLLSACAHAGHFDQAWSLIDNIDFEAPKAKS
VTHVPKALSSPQQRRGAKHNSSSSIQLTIAITSLISGLAQAGRVDEALEL
FSRMKEIKIPPSSITYASLISACFRCNATGRARELFQSFIGDDVISIEVC
NAYMSGLCHSRQEENLKQAAAVLDDMLTRKIHIFPDIHSFNCLLDAWVSI
RNFEQAELIMELMQANKIRPSITSYTILLRGYSDTGQYGDAKRAFRELSR
RRLRPDRIALNAFINVCVRSGDLRAAERVVAQMEQRKGAISPSAKSYSPI
IASYFRHGKFDEGWQLYERMRSQKIPLNEYLVQYMTIQLSQNNDIQGNTD
QVQYCAQLLKDGLADGVNVKMLRRCRKKMLGELRSKRNREALNQLANEPE
FRLVSEQIFDRHGWNQIDSGWRVF*

mRNA from alignment at tig00004441_pilon:228407..230581-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7111.t1 ID=Gchil7111.t1|Name=Gchil7111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2175bp|location=Sequence derived from alignment at tig00004441_pilon:228407..230581- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTGCTCGTTTCGGAGGCTCAAATGCCCACTATCGGCAAACGACA
CCCCTGTCGGCACGGCGCTGCCCCGCCAATGGCCGCCTTCCTTCCGCCGC
TCGGTCTCCCGCGCCCGCGTTGCGACCGTGTGGTGCCCACCATCGCCTCT
GCGCCATCACCCATCTGTCTGGCCGCCAGCCCCCCTCGCTCTTTCCCGCC
TGACTCCCACTCCGACTTGCGCCACGCCATCCACGAATGCGCGCCCTCCC
GCATCCTCCCTCTTCTCACCCGCCGCCTGGCCCAGAGTGACCCCCCCGTT
TCCCCTCAGCTGTGGCGCAGTGCCCTCAACGCCTGTCTCACCGCGCGGAA
TCCTAATGCAGTTGCTGCCGTGCTGTTTCGAGGCTTGGATTCTCCCCTCG
CTGTGAGCTTGCACATTTCATCCTTCGTGCACCCGCTCAAGTTTCTCGCA
TCCATCTCCAAATGGAATCTTCTCTTTCCCTTGCTTGACAGCATGTGGCT
GGTAGGAAATGCTGTCGCCCCAGATGAAAAGCTCATCGTTACTCTGGCCA
ACATCGCTGTGAATCGAGACAATTACCGCGTATGTCTCAAGCTCTTCCAT
CTCATGCGTCATCACGGAATCGAAATGGGGCCGTTTTCGTACTCCGTTCT
TCTCAAGTCACATGGTCGCGCAAGAAACGTAGTCGCCGTCAAGTCCGCGC
TTTCCAAAATCTGCAGCAGCAAACTGAAAGTGGACTCGGTACTGCTCAAC
TCCGCCGTCGACGCCCTTGTGCGATGCAATGATCTCAGTGCCGCAATGCG
TTTGATTGCGGAAGACGACAACAAGCCCCTGCTGGACGTCTCCAGCTACA
ATACCATCATCAAAGGCTTTGCGAGTCGCGGGCTCGTTTCAGATGCTTTC
AAAGTCGTAGATACAATGAAAGCCGCCCAATGCACCCCAAATCAAGTTAC
CACAAACACCCTTCTTTCCGCCTGTGCCCATGCTGGCCATTTTGACCAGG
CATGGAGCCTCATCGATAACATCGATTTTGAAGCTCCGAAAGCCAAATCT
GTTACACATGTACCTAAAGCATTATCTTCTCCTCAGCAGCGGAGAGGGGC
AAAGCACAATTCATCCTCCTCAATCCAATTGACAATAGCAATAACTTCTC
TTATTTCCGGACTTGCACAAGCTGGTAGAGTTGATGAGGCACTCGAGCTC
TTCAGCCGAATGAAAGAAATCAAAATACCACCATCTTCTATTACATACGC
GTCTCTCATTTCAGCATGCTTCCGATGCAATGCAACTGGACGTGCTAGGG
AGCTTTTCCAGTCATTTATTGGTGATGATGTGATCTCCATCGAAGTGTGT
AACGCATACATGTCTGGCCTTTGCCATTCCAGACAAGAAGAGAACCTCAA
ACAGGCAGCAGCTGTTCTTGATGATATGCTGACCCGAAAAATCCACATTT
TCCCGGACATTCATAGCTTTAACTGCCTGTTAGACGCTTGGGTTAGTATA
AGAAACTTTGAACAGGCAGAACTTATCATGGAGCTCATGCAAGCGAACAA
GATTCGCCCCTCTATAACGTCGTACACGATTCTTTTGAGGGGCTACAGTG
ATACTGGTCAGTATGGAGATGCTAAGCGAGCTTTTCGTGAGCTTTCTCGG
AGGAGATTGCGACCTGATCGCATTGCGCTGAACGCATTCATAAACGTTTG
CGTACGATCAGGCGATCTGAGAGCAGCAGAGCGTGTCGTTGCTCAAATGG
AACAACGAAAAGGAGCAATCAGTCCAAGTGCAAAGAGTTACAGCCCAATT
ATAGCTTCATATTTTCGTCATGGAAAGTTCGACGAAGGTTGGCAACTTTA
TGAGCGAATGCGCTCACAAAAAATTCCGCTAAACGAGTATCTTGTTCAAT
ACATGACCATTCAACTTTCCCAGAACAATGATATACAAGGAAACACAGAC
CAAGTGCAATACTGCGCCCAACTCCTGAAGGACGGGCTAGCTGACGGTGT
GAACGTTAAGATGCTTCGAAGGTGCCGAAAAAAAATGTTGGGGGAGCTCA
GGAGCAAACGCAACAGGGAAGCACTCAATCAGTTGGCCAATGAACCAGAG
TTTCGACTTGTTAGCGAACAAATCTTTGATAGGCATGGCTGGAATCAAAT
TGACTCTGGGTGGCGTGTATTTTAG

Coding sequence (CDS) from alignment at tig00004441_pilon:228407..230581-

>Gchil7111.t1 ID=Gchil7111.t1|Name=Gchil7111.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2175bp|location=Sequence derived from alignment at tig00004441_pilon:228407..230581- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGTGCTCGTTTCGGAGGCTCAAATGCCCACTATCGGCAAACGACA
CCCCTGTCGGCACGGCGCTGCCCCGCCAATGGCCGCCTTCCTTCCGCCGC
TCGGTCTCCCGCGCCCGCGTTGCGACCGTGTGGTGCCCACCATCGCCTCT
GCGCCATCACCCATCTGTCTGGCCGCCAGCCCCCCTCGCTCTTTCCCGCC
TGACTCCCACTCCGACTTGCGCCACGCCATCCACGAATGCGCGCCCTCCC
GCATCCTCCCTCTTCTCACCCGCCGCCTGGCCCAGAGTGACCCCCCCGTT
TCCCCTCAGCTGTGGCGCAGTGCCCTCAACGCCTGTCTCACCGCGCGGAA
TCCTAATGCAGTTGCTGCCGTGCTGTTTCGAGGCTTGGATTCTCCCCTCG
CTGTGAGCTTGCACATTTCATCCTTCGTGCACCCGCTCAAGTTTCTCGCA
TCCATCTCCAAATGGAATCTTCTCTTTCCCTTGCTTGACAGCATGTGGCT
GGTAGGAAATGCTGTCGCCCCAGATGAAAAGCTCATCGTTACTCTGGCCA
ACATCGCTGTGAATCGAGACAATTACCGCGTATGTCTCAAGCTCTTCCAT
CTCATGCGTCATCACGGAATCGAAATGGGGCCGTTTTCGTACTCCGTTCT
TCTCAAGTCACATGGTCGCGCAAGAAACGTAGTCGCCGTCAAGTCCGCGC
TTTCCAAAATCTGCAGCAGCAAACTGAAAGTGGACTCGGTACTGCTCAAC
TCCGCCGTCGACGCCCTTGTGCGATGCAATGATCTCAGTGCCGCAATGCG
TTTGATTGCGGAAGACGACAACAAGCCCCTGCTGGACGTCTCCAGCTACA
ATACCATCATCAAAGGCTTTGCGAGTCGCGGGCTCGTTTCAGATGCTTTC
AAAGTCGTAGATACAATGAAAGCCGCCCAATGCACCCCAAATCAAGTTAC
CACAAACACCCTTCTTTCCGCCTGTGCCCATGCTGGCCATTTTGACCAGG
CATGGAGCCTCATCGATAACATCGATTTTGAAGCTCCGAAAGCCAAATCT
GTTACACATGTACCTAAAGCATTATCTTCTCCTCAGCAGCGGAGAGGGGC
AAAGCACAATTCATCCTCCTCAATCCAATTGACAATAGCAATAACTTCTC
TTATTTCCGGACTTGCACAAGCTGGTAGAGTTGATGAGGCACTCGAGCTC
TTCAGCCGAATGAAAGAAATCAAAATACCACCATCTTCTATTACATACGC
GTCTCTCATTTCAGCATGCTTCCGATGCAATGCAACTGGACGTGCTAGGG
AGCTTTTCCAGTCATTTATTGGTGATGATGTGATCTCCATCGAAGTGTGT
AACGCATACATGTCTGGCCTTTGCCATTCCAGACAAGAAGAGAACCTCAA
ACAGGCAGCAGCTGTTCTTGATGATATGCTGACCCGAAAAATCCACATTT
TCCCGGACATTCATAGCTTTAACTGCCTGTTAGACGCTTGGGTTAGTATA
AGAAACTTTGAACAGGCAGAACTTATCATGGAGCTCATGCAAGCGAACAA
GATTCGCCCCTCTATAACGTCGTACACGATTCTTTTGAGGGGCTACAGTG
ATACTGGTCAGTATGGAGATGCTAAGCGAGCTTTTCGTGAGCTTTCTCGG
AGGAGATTGCGACCTGATCGCATTGCGCTGAACGCATTCATAAACGTTTG
CGTACGATCAGGCGATCTGAGAGCAGCAGAGCGTGTCGTTGCTCAAATGG
AACAACGAAAAGGAGCAATCAGTCCAAGTGCAAAGAGTTACAGCCCAATT
ATAGCTTCATATTTTCGTCATGGAAAGTTCGACGAAGGTTGGCAACTTTA
TGAGCGAATGCGCTCACAAAAAATTCCGCTAAACGAGTATCTTGTTCAAT
ACATGACCATTCAACTTTCCCAGAACAATGATATACAAGGAAACACAGAC
CAAGTGCAATACTGCGCCCAACTCCTGAAGGACGGGCTAGCTGACGGTGT
GAACGTTAAGATGCTTCGAAGGTGCCGAAAAAAAATGTTGGGGGAGCTCA
GGAGCAAACGCAACAGGGAAGCACTCAATCAGTTGGCCAATGAACCAGAG
TTTCGACTTGTTAGCGAACAAATCTTTGATAGGCATGGCTGGAATCAAAT
TGACTCTGGGTGGCGTGTATTTTAG