Gchil7101.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7101.t1
Unique NameGchil7101.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:134995..135796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704666.1
Preferred namePETF2
PFAMsFer2
Max annot lvl2759|Eukaryota
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Evalue1.12e-47
EggNOG OGsCOG0633@1|root,2RXRY@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryC
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7101Gchil7101Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 134995..135796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7101.t1Gchil7101.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 134995..135796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7101.t1.stop1Gchil7101.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 134995..134997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7101.t1.CDS1Gchil7101.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 134995..135372 -
Gchil7101.t1.CDS2Gchil7101.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 135473..135520 -
Gchil7101.t1.CDS3Gchil7101.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 135571..135631 -
Gchil7101.t1.CDS4Gchil7101.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 135780..135796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7101.t1.exon1Gchil7101.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 134995..135372 -
Gchil7101.t1.exon2Gchil7101.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 135473..135520 -
Gchil7101.t1.exon3Gchil7101.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 135571..135631 -
Gchil7101.t1.exon4Gchil7101.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 135780..135796 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7101.t1.intron1Gchil7101.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 135373..135472 -
Gchil7101.t1.intron2Gchil7101.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 135521..135570 -
Gchil7101.t1.intron3Gchil7101.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 135632..135779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7101.t1.start1Gchil7101.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 135794..135796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7101.t1 ID=Gchil7101.t1|Name=Gchil7101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MTLSTSPQCISHFCPHSYHKKDAFVKSSIEPSSRRRDGSLPSRQGAKTYQ
VTVEDPHNGVVHKYSVPEDRYVWHSMTDQGADIPASCRNGCCTTCAVKIT
SGQVQQDQALGLLKNMRAKGYALLCVSYPMSDIHCVLQDKDEVYIKQFGS
SFEGGGVEWGGFMPEDD*
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spliced messenger RNA

>Gchil7101.t1 ID=Gchil7101.t1|Name=Gchil7101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004441_pilon:134995..135796- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTGTCCACATCTCCGCAATGTATCTCGCATTTCTGTCCCCATTC
GTACCACAAGAAAGACGCATTCGTGAAGTCTTCCATAGAGCCGTCAAGTC
GTAGAAGGGATGGATCACTGCCAAGCAGACAAGGTGCGAAAACCTATCAA
GTAACAGTAGAAGACCCTCACAACGGCGTGGTTCACAAATACTCTGTTCC
GGAAGATCGTTATGTTTGGCATAGCATGACAGATCAAGGTGCGGATATCC
CAGCGTCATGTCGAAACGGCTGTTGCACAACGTGCGCTGTGAAGATTACT
AGCGGCCAAGTCCAACAAGACCAGGCGTTAGGACTGCTGAAGAACATGAG
AGCGAAAGGCTACGCGCTATTGTGTGTCAGTTACCCGATGAGCGACATAC
ACTGTGTTCTTCAAGATAAAGACGAAGTCTATATTAAGCAATTTGGTTCT
TCCTTTGAGGGTGGTGGCGTCGAATGGGGTGGTTTTATGCCGGAGGATGA
CTAG
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protein sequence of Gchil7101.t1

>Gchil7101.t1 ID=Gchil7101.t1|Name=Gchil7101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MTLSTSPQCISHFCPHSYHKKDAFVKSSIEPSSRRRDGSLPSRQGAKTYQ
VTVEDPHNGVVHKYSVPEDRYVWHSMTDQGADIPASCRNGCCTTCAVKIT
SGQVQQDQALGLLKNMRAKGYALLCVSYPMSDIHCVLQDKDEVYIKQFGS
SFEGGGVEWGGFMPEDD*
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mRNA from alignment at tig00004441_pilon:134995..135796-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7101.t1 ID=Gchil7101.t1|Name=Gchil7101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=802bp|location=Sequence derived from alignment at tig00004441_pilon:134995..135796- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTGTCCACATCGTACGTTTTCACACGTTCCTTGAGCTTCGGCCG
ATTTCTGAGGCACCTTTCTCGTGCACCACAACGACCTACTGCTCCCTGTC
GCCCATAAGAGCTAATTAAGTTACGACTCTTGACTGTCTCTTTGTCTTGT
ATGCGCTGTTGTCAGTCCGCAATGTATCTCGCATTTCTGTCCCCATTCGT
ACCACAAGAAAGACGCATTCGTGAAGGTGCGAAATGTGTTCATAAGTCAA
TGTCTCCCCCACCACCATCATCAAAGTCTTCCATAGAGCCGTCAAGTCGT
AGAAGGGATGGATCACTGCCAAGCGTACGTTGTTCATTTACACTGAAACC
TCACTTCTCGCCGTCATCAGTACATATAACCGCTCGCTCACACCTTCCTC
CCGATTCAAATCACATTTTCACAGAGACAAGGTGCGAAAACCTATCAAGT
AACAGTAGAAGACCCTCACAACGGCGTGGTTCACAAATACTCTGTTCCGG
AAGATCGTTATGTTTGGCATAGCATGACAGATCAAGGTGCGGATATCCCA
GCGTCATGTCGAAACGGCTGTTGCACAACGTGCGCTGTGAAGATTACTAG
CGGCCAAGTCCAACAAGACCAGGCGTTAGGACTGCTGAAGAACATGAGAG
CGAAAGGCTACGCGCTATTGTGTGTCAGTTACCCGATGAGCGACATACAC
TGTGTTCTTCAAGATAAAGACGAAGTCTATATTAAGCAATTTGGTTCTTC
CTTTGAGGGTGGTGGCGTCGAATGGGGTGGTTTTATGCCGGAGGATGACT
AG
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Coding sequence (CDS) from alignment at tig00004441_pilon:134995..135796-

>Gchil7101.t1 ID=Gchil7101.t1|Name=Gchil7101.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00004441_pilon:134995..135796- (Gracilaria chilensis NLEC103_M9 male)
ATGACTCTGTCCACATCTCCGCAATGTATCTCGCATTTCTGTCCCCATTC
GTACCACAAGAAAGACGCATTCGTGAAGTCTTCCATAGAGCCGTCAAGTC
GTAGAAGGGATGGATCACTGCCAAGCAGACAAGGTGCGAAAACCTATCAA
GTAACAGTAGAAGACCCTCACAACGGCGTGGTTCACAAATACTCTGTTCC
GGAAGATCGTTATGTTTGGCATAGCATGACAGATCAAGGTGCGGATATCC
CAGCGTCATGTCGAAACGGCTGTTGCACAACGTGCGCTGTGAAGATTACT
AGCGGCCAAGTCCAACAAGACCAGGCGTTAGGACTGCTGAAGAACATGAG
AGCGAAAGGCTACGCGCTATTGTGTGTCAGTTACCCGATGAGCGACATAC
ACTGTGTTCTTCAAGATAAAGACGAAGTCTATATTAAGCAATTTGGTTCT
TCCTTTGAGGGTGGTGGCGTCGAATGGGGTGGTTTTATGCCGGAGGATGA
CTAG
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