Gchil7054.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7054.t1
Unique NameGchil7054.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:308677..309343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7054Gchil7054Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 308677..309343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7054.t1Gchil7054.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 308677..309343 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7054.t1.start1Gchil7054.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 308677..308679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7054.t1.CDS1Gchil7054.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 308677..308880 +
Gchil7054.t1.CDS2Gchil7054.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 309007..309223 +
Gchil7054.t1.CDS3Gchil7054.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 309285..309343 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7054.t1.exon1Gchil7054.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 308677..308880 +
Gchil7054.t1.exon2Gchil7054.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 309007..309223 +
Gchil7054.t1.exon3Gchil7054.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 309285..309343 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7054.t1.intron1Gchil7054.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 308881..309006 +
Gchil7054.t1.intron2Gchil7054.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 309224..309284 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7054.t1.stop1Gchil7054.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 309341..309343 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7054.t1 ID=Gchil7054.t1|Name=Gchil7054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=160bp
MHCFAPQFIAPQETSIIEQISEDASPSHSPSSTDRRSKSAGITKSTFLEI
SCRTAHTWVFGRPKRQAWPLNVVRTYRTVGKRFVLIKDQTVQDGAGSVLL
SPTFLQSNELDKLMIARTVHEAMYRSAPCILHSVHENFEANNKFRSALHV
RTPARIDAT*
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spliced messenger RNA

>Gchil7054.t1 ID=Gchil7054.t1|Name=Gchil7054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000131_pilon:308677..309343+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTGTTTTGCACCGCAGTTCATTGCACCCCAGGAGACGTCCATAAT
CGAGCAAATATCTGAGGATGCTTCTCCTTCACACTCTCCGTCTTCGACTG
ACCGCCGTTCGAAATCGGCTGGAATCACTAAAAGTACCTTTTTGGAGATC
TCTTGCCGCACTGCTCACACATGGGTATTTGGTCGGCCAAAACGTCAAGC
ATGGCCTCTCAATGTAGTCCGTACATATCGTACTGTCGGAAAACGTTTTG
TGCTCATCAAAGATCAAACGGTACAAGATGGAGCCGGCTCGGTGTTGCTT
TCGCCCACATTCCTTCAGTCGAATGAATTGGACAAACTGATGATCGCACG
CACCGTTCATGAAGCCATGTACCGCTCTGCGCCTTGTATTCTACATTCCG
TGCATGAAAACTTCGAGGCAAACAACAAGTTCAGAAGCGCTCTTCACGTG
CGTACACCAGCACGGATCGATGCTACTTGA
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protein sequence of Gchil7054.t1

>Gchil7054.t1 ID=Gchil7054.t1|Name=Gchil7054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=160bp
MHCFAPQFIAPQETSIIEQISEDASPSHSPSSTDRRSKSAGITKSTFLEI
SCRTAHTWVFGRPKRQAWPLNVVRTYRTVGKRFVLIKDQTVQDGAGSVLL
SPTFLQSNELDKLMIARTVHEAMYRSAPCILHSVHENFEANNKFRSALHV
RTPARIDAT*
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mRNA from alignment at tig00000131_pilon:308677..309343+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7054.t1 ID=Gchil7054.t1|Name=Gchil7054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=667bp|location=Sequence derived from alignment at tig00000131_pilon:308677..309343+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTGTTTTGCACCGCAGTTCATTGCACCCCAGGAGACGTCCATAAT
CGAGCAAATATCTGAGGATGCTTCTCCTTCACACTCTCCGTCTTCGACTG
ACCGCCGTTCGAAATCGGCTGGAATCACTAAAAGTACCTTTTTGGAGATC
TCTTGCCGCACTGCTCACACATGGGTATTTGGTCGGCCAAAACGTCAAGC
ATGGGTACGTTCCTTACCTCGCGCAATACTCATTTCAGCCTCTCTGCAAT
TCCAAAAACCTCACCACGTTTACTAACCAATGAATGTATGTGTTTCGCTC
TTGGCGTGCTACCACGATTACTTGTCGTAGCCTCTCAATGTAGTCCGTAC
ATATCGTACTGTCGGAAAACGTTTTGTGCTCATCAAAGATCAAACGGTAC
AAGATGGAGCCGGCTCGGTGTTGCTTTCGCCCACATTCCTTCAGTCGAAT
GAATTGGACAAACTGATGATCGCACGCACCGTTCATGAAGCCATGTACCG
CTCTGCGCCTTGTATTCTACATTCCGTGCATGAAAACTTCGAGGCAAGTC
TGTTCGACCGGTTTTCGCAACTGCCCGCAGTAATCTGCATGCTAACGGGT
GACCTTAGACAACAAGTTCAGAAGCGCTCTTCACGTGCGTACACCAGCAC
GGATCGATGCTACTTGA
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Coding sequence (CDS) from alignment at tig00000131_pilon:308677..309343+

>Gchil7054.t1 ID=Gchil7054.t1|Name=Gchil7054.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000131_pilon:308677..309343+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTGTTTTGCACCGCAGTTCATTGCACCCCAGGAGACGTCCATAAT
CGAGCAAATATCTGAGGATGCTTCTCCTTCACACTCTCCGTCTTCGACTG
ACCGCCGTTCGAAATCGGCTGGAATCACTAAAAGTACCTTTTTGGAGATC
TCTTGCCGCACTGCTCACACATGGGTATTTGGTCGGCCAAAACGTCAAGC
ATGGCCTCTCAATGTAGTCCGTACATATCGTACTGTCGGAAAACGTTTTG
TGCTCATCAAAGATCAAACGGTACAAGATGGAGCCGGCTCGGTGTTGCTT
TCGCCCACATTCCTTCAGTCGAATGAATTGGACAAACTGATGATCGCACG
CACCGTTCATGAAGCCATGTACCGCTCTGCGCCTTGTATTCTACATTCCG
TGCATGAAAACTTCGAGGCAAACAACAAGTTCAGAAGCGCTCTTCACGTG
CGTACACCAGCACGGATCGATGCTACTTGA
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