Gchil7045.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7045.t1
Unique Name	Gchil7045.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:251943..252995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005851791.1
Preferred name	FPPS
PFAMs	polyprenyl_synt
Max annot lvl	3041\|Chlorophyta
KEGG rclass	RC00279
KEGG ko	ko:K00787
KEGG Reaction	R01658,R02003
KEGG Pathway	ko00900,ko01100,ko01110,ko01130,ko05164,ko05166,map00900,map01100,map01110,map01130,map05164,map05166
KEGG Module	M00366,M00367
Evalue	1.08e-110
EggNOG OGs	COG0142@1\|root,KOG0711@2759\|Eukaryota,37RPI@33090\|Viridiplantae,34GSC@3041\|Chlorophyta
EC	2.5.1.1,2.5.1.10
Description	Belongs to the FPP GGPP synthase family
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko01006

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7045	Gchil7045	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 251943..252995 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7045.t1.start1	Gchil7045.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 251943..251945 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7045.t1.CDS1	Gchil7045.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 251943..252995 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7045.t1.exon1	Gchil7045.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 251943..252995 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7045.t1.stop1	Gchil7045.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 252993..252995 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7045.t1	Gchil7045.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 251943..252995 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:251943..252995+
coding sequence from alignment at tig00000131_pilon:251943..252995+

mRNA sequence

>Gchil7045.t1 ID=Gchil7045.t1|Name=Gchil7045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MGSNPPLTDADRFKSLCPALVQTLMSDVSKSFDLPPDALKYIERNVMYNV
PHGKLNRGMAVLQCYRAFQPHQQLTEQEINRINTLGWCVEFLQAFFLVAD
DIMDDSITRRGQPCFFRVPGIGMNAINDAMILEMMIYRILDIHFRDHPQY
LHLIQLFHEMTFTTEMGQLLDLTTSQPADQVLLHNFTEQNLQRIYKYKTS
HYTFYLPVALGMRLASVSDQALYNTAKDICMKIGYYFQAQDDFIDAFGDP
AVTGKIGTDIEDNTCSWLIVRALERCSEQDRLVLEQNYGKKDKLCSDRVK
QVYRKLDLPSVFAQFEQSSYDDISKSIAEIQGMPTGAFEFFLAKLYKRNR
*

spliced messenger RNA

>Gchil7045.t1 ID=Gchil7045.t1|Name=Gchil7045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000131_pilon:251943..252995+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCTAATCCTCCGCTAACCGACGCCGATCGATTCAAGTCGTTATG
CCCTGCATTGGTGCAAACTTTGATGAGCGATGTGAGCAAAAGCTTCGATC
TTCCGCCTGATGCCCTAAAATACATTGAAAGAAATGTAATGTACAACGTT
CCGCATGGAAAGCTGAATCGTGGAATGGCCGTTCTTCAGTGCTACAGGGC
CTTTCAGCCTCATCAACAGCTCACAGAACAAGAGATTAATCGAATAAATA
CGTTAGGCTGGTGCGTAGAGTTTCTGCAGGCCTTCTTCTTGGTGGCAGAT
GACATAATGGATGACAGCATTACCAGACGAGGACAGCCCTGTTTTTTTCG
CGTCCCAGGCATAGGAATGAATGCCATTAATGATGCTATGATTTTGGAAA
TGATGATTTATCGTATCCTTGACATTCATTTTCGAGATCATCCTCAATAT
CTTCACCTTATTCAACTCTTCCACGAAATGACCTTCACAACCGAAATGGG
CCAACTTCTCGATCTTACCACATCCCAACCAGCAGATCAAGTCCTCCTTC
ACAACTTTACAGAGCAAAATCTCCAGAGAATATACAAATACAAAACCTCC
CACTACACCTTTTATCTGCCAGTCGCACTTGGAATGCGCCTTGCTTCAGT
TTCAGATCAAGCCTTGTATAACACTGCCAAAGATATATGCATGAAAATTG
GGTACTACTTCCAAGCCCAAGACGATTTCATCGATGCTTTTGGGGATCCC
GCTGTAACAGGCAAGATTGGTACTGATATTGAGGATAACACCTGTTCCTG
GCTCATCGTCAGAGCTCTCGAACGCTGTTCTGAACAAGATCGACTCGTTT
TGGAACAGAATTATGGGAAGAAAGATAAGCTTTGCTCCGATCGCGTGAAA
CAAGTCTATCGAAAGCTCGACCTTCCCAGTGTGTTCGCCCAATTTGAGCA
AAGCAGTTATGATGACATTTCGAAAAGTATTGCTGAGATTCAAGGAATGC
CCACAGGTGCGTTTGAATTCTTCCTTGCAAAACTATATAAACGAAATCGG
TGA

protein sequence of Gchil7045.t1

>Gchil7045.t1 ID=Gchil7045.t1|Name=Gchil7045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MGSNPPLTDADRFKSLCPALVQTLMSDVSKSFDLPPDALKYIERNVMYNV
PHGKLNRGMAVLQCYRAFQPHQQLTEQEINRINTLGWCVEFLQAFFLVAD
DIMDDSITRRGQPCFFRVPGIGMNAINDAMILEMMIYRILDIHFRDHPQY
LHLIQLFHEMTFTTEMGQLLDLTTSQPADQVLLHNFTEQNLQRIYKYKTS
HYTFYLPVALGMRLASVSDQALYNTAKDICMKIGYYFQAQDDFIDAFGDP
AVTGKIGTDIEDNTCSWLIVRALERCSEQDRLVLEQNYGKKDKLCSDRVK
QVYRKLDLPSVFAQFEQSSYDDISKSIAEIQGMPTGAFEFFLAKLYKRNR
*

mRNA from alignment at tig00000131_pilon:251943..252995+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7045.t1 ID=Gchil7045.t1|Name=Gchil7045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000131_pilon:251943..252995+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTCTAATCCTCCGCTAACCGACGCCGATCGATTCAAGTCGTTATG
CCCTGCATTGGTGCAAACTTTGATGAGCGATGTGAGCAAAAGCTTCGATC
TTCCGCCTGATGCCCTAAAATACATTGAAAGAAATGTAATGTACAACGTT
CCGCATGGAAAGCTGAATCGTGGAATGGCCGTTCTTCAGTGCTACAGGGC
CTTTCAGCCTCATCAACAGCTCACAGAACAAGAGATTAATCGAATAAATA
CGTTAGGCTGGTGCGTAGAGTTTCTGCAGGCCTTCTTCTTGGTGGCAGAT
GACATAATGGATGACAGCATTACCAGACGAGGACAGCCCTGTTTTTTTCG
CGTCCCAGGCATAGGAATGAATGCCATTAATGATGCTATGATTTTGGAAA
TGATGATTTATCGTATCCTTGACATTCATTTTCGAGATCATCCTCAATAT
CTTCACCTTATTCAACTCTTCCACGAAATGACCTTCACAACCGAAATGGG
CCAACTTCTCGATCTTACCACATCCCAACCAGCAGATCAAGTCCTCCTTC
ACAACTTTACAGAGCAAAATCTCCAGAGAATATACAAATACAAAACCTCC
CACTACACCTTTTATCTGCCAGTCGCACTTGGAATGCGCCTTGCTTCAGT
TTCAGATCAAGCCTTGTATAACACTGCCAAAGATATATGCATGAAAATTG
GGTACTACTTCCAAGCCCAAGACGATTTCATCGATGCTTTTGGGGATCCC
GCTGTAACAGGCAAGATTGGTACTGATATTGAGGATAACACCTGTTCCTG
GCTCATCGTCAGAGCTCTCGAACGCTGTTCTGAACAAGATCGACTCGTTT
TGGAACAGAATTATGGGAAGAAAGATAAGCTTTGCTCCGATCGCGTGAAA
CAAGTCTATCGAAAGCTCGACCTTCCCAGTGTGTTCGCCCAATTTGAGCA
AAGCAGTTATGATGACATTTCGAAAAGTATTGCTGAGATTCAAGGAATGC
CCACAGGTGCGTTTGAATTCTTCCTTGCAAAACTATATAAACGAAATCGG
TGA

Coding sequence (CDS) from alignment at tig00000131_pilon:251943..252995+

>Gchil7045.t1 ID=Gchil7045.t1|Name=Gchil7045.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000131_pilon:251943..252995+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTCTAATCCTCCGCTAACCGACGCCGATCGATTCAAGTCGTTATG
CCCTGCATTGGTGCAAACTTTGATGAGCGATGTGAGCAAAAGCTTCGATC
TTCCGCCTGATGCCCTAAAATACATTGAAAGAAATGTAATGTACAACGTT
CCGCATGGAAAGCTGAATCGTGGAATGGCCGTTCTTCAGTGCTACAGGGC
CTTTCAGCCTCATCAACAGCTCACAGAACAAGAGATTAATCGAATAAATA
CGTTAGGCTGGTGCGTAGAGTTTCTGCAGGCCTTCTTCTTGGTGGCAGAT
GACATAATGGATGACAGCATTACCAGACGAGGACAGCCCTGTTTTTTTCG
CGTCCCAGGCATAGGAATGAATGCCATTAATGATGCTATGATTTTGGAAA
TGATGATTTATCGTATCCTTGACATTCATTTTCGAGATCATCCTCAATAT
CTTCACCTTATTCAACTCTTCCACGAAATGACCTTCACAACCGAAATGGG
CCAACTTCTCGATCTTACCACATCCCAACCAGCAGATCAAGTCCTCCTTC
ACAACTTTACAGAGCAAAATCTCCAGAGAATATACAAATACAAAACCTCC
CACTACACCTTTTATCTGCCAGTCGCACTTGGAATGCGCCTTGCTTCAGT
TTCAGATCAAGCCTTGTATAACACTGCCAAAGATATATGCATGAAAATTG
GGTACTACTTCCAAGCCCAAGACGATTTCATCGATGCTTTTGGGGATCCC
GCTGTAACAGGCAAGATTGGTACTGATATTGAGGATAACACCTGTTCCTG
GCTCATCGTCAGAGCTCTCGAACGCTGTTCTGAACAAGATCGACTCGTTT
TGGAACAGAATTATGGGAAGAAAGATAAGCTTTGCTCCGATCGCGTGAAA
CAAGTCTATCGAAAGCTCGACCTTCCCAGTGTGTTCGCCCAATTTGAGCA
AAGCAGTTATGATGACATTTCGAAAAGTATTGCTGAGATTCAAGGAATGC
CCACAGGTGCGTTTGAATTCTTCCTTGCAAAACTATATAAACGAAATCGG
TGA