Gchil7032.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7032.t1
Unique NameGchil7032.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:230300..231211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G296
Preferred nameVTE5
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00017
KEGG koko:K15892,ko:K18678
KEGG ReactionR09849,R10659
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006766,GO:0006775,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009507,GO:0009536,GO:0009987,GO:0010189,GO:0010276,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0018130,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Evalue3.01e-40
EggNOG OGsCOG0170@1|root,KOG4453@2759|Eukaryota
EC2.7.1.182,2.7.1.216
Descriptionphytol kinase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7032Gchil7032Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 230300..231211 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7032.t1.stop1Gchil7032.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 230300..230302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7032.t1.CDS1Gchil7032.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 230300..231211 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7032.t1.exon1Gchil7032.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 230300..231211 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7032.t1.start1Gchil7032.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 231209..231211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7032.t1Gchil7032.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 230300..231211 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7032.t1 ID=Gchil7032.t1|Name=Gchil7032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MKAASFAAPSLVRRDARLCPQRRHLHRARPALHRVAPRRSASRPMSTRAM
LLPEWSVPNSHDAALTAAILGAVTVWLGAWQRLTAADVVSSRTTRKVIHI
SCGPAFLALWPLYSEGAGARALATAVPLLFSLVLLVSGLSAAASSRSALA
RALSRGGRAAEALQGPLAYSVVLLLLTALLWQSAAAAVAVANMCVGDGLA
EVVGRRLPSLKWPASEKSAAGSAAFVVGAAAASVALLWWFSRFGLAHTPT
PGSVAAVALIAVLCAAAELLAERFGGDDNIAVAACATALALLLLGDGAPV
PFS*
back to top

spliced messenger RNA

>Gchil7032.t1 ID=Gchil7032.t1|Name=Gchil7032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000131_pilon:230300..231211- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGGCGAGCTTCGCAGCGCCGTCGCTTGTGCGCCGCGATGCGCG
CCTCTGTCCGCAGCGCCGCCATCTGCATCGCGCGCGCCCCGCGCTGCATC
GCGTGGCTCCGCGTCGAAGTGCGTCGCGACCAATGTCAACGCGCGCCATG
CTGCTGCCCGAGTGGTCTGTGCCCAACTCGCACGACGCCGCGCTCACGGC
GGCCATTCTGGGCGCGGTGACTGTGTGGCTAGGCGCGTGGCAGCGCCTCA
CGGCGGCGGACGTAGTTTCATCTCGCACCACGCGCAAGGTGATCCACATC
AGCTGCGGCCCTGCGTTCCTGGCGTTGTGGCCGCTGTACAGCGAAGGCGC
GGGCGCGCGCGCGTTGGCCACGGCCGTGCCACTTCTTTTCTCGCTGGTGC
TGTTGGTATCCGGACTTTCTGCGGCTGCGTCGAGCCGCAGCGCGCTGGCG
CGCGCGCTGTCGCGCGGTGGACGCGCCGCTGAGGCGTTGCAGGGTCCGCT
GGCGTACAGCGTGGTGTTGCTGTTGCTGACGGCGTTGCTGTGGCAAAGCG
CGGCCGCGGCGGTGGCAGTGGCCAACATGTGCGTGGGCGACGGGCTGGCC
GAGGTGGTGGGGCGCCGCCTGCCCTCGCTCAAGTGGCCCGCCAGCGAGAA
GAGCGCCGCCGGCAGCGCCGCGTTCGTGGTCGGCGCCGCCGCGGCCAGCG
TGGCGCTTCTTTGGTGGTTCTCGCGCTTCGGACTTGCTCACACACCTACG
CCGGGCTCCGTCGCCGCCGTCGCGCTCATCGCCGTGCTCTGCGCCGCAGC
AGAGCTGTTAGCGGAGCGTTTCGGCGGCGACGACAACATCGCCGTTGCGG
CTTGCGCCACAGCGCTCGCGTTGCTGCTACTCGGCGACGGCGCCCCTGTG
CCGTTCAGCTAA
back to top

protein sequence of Gchil7032.t1

>Gchil7032.t1 ID=Gchil7032.t1|Name=Gchil7032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MKAASFAAPSLVRRDARLCPQRRHLHRARPALHRVAPRRSASRPMSTRAM
LLPEWSVPNSHDAALTAAILGAVTVWLGAWQRLTAADVVSSRTTRKVIHI
SCGPAFLALWPLYSEGAGARALATAVPLLFSLVLLVSGLSAAASSRSALA
RALSRGGRAAEALQGPLAYSVVLLLLTALLWQSAAAAVAVANMCVGDGLA
EVVGRRLPSLKWPASEKSAAGSAAFVVGAAAASVALLWWFSRFGLAHTPT
PGSVAAVALIAVLCAAAELLAERFGGDDNIAVAACATALALLLLGDGAPV
PFS*
back to top

mRNA from alignment at tig00000131_pilon:230300..231211-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7032.t1 ID=Gchil7032.t1|Name=Gchil7032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000131_pilon:230300..231211- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCGGCGAGCTTCGCAGCGCCGTCGCTTGTGCGCCGCGATGCGCG
CCTCTGTCCGCAGCGCCGCCATCTGCATCGCGCGCGCCCCGCGCTGCATC
GCGTGGCTCCGCGTCGAAGTGCGTCGCGACCAATGTCAACGCGCGCCATG
CTGCTGCCCGAGTGGTCTGTGCCCAACTCGCACGACGCCGCGCTCACGGC
GGCCATTCTGGGCGCGGTGACTGTGTGGCTAGGCGCGTGGCAGCGCCTCA
CGGCGGCGGACGTAGTTTCATCTCGCACCACGCGCAAGGTGATCCACATC
AGCTGCGGCCCTGCGTTCCTGGCGTTGTGGCCGCTGTACAGCGAAGGCGC
GGGCGCGCGCGCGTTGGCCACGGCCGTGCCACTTCTTTTCTCGCTGGTGC
TGTTGGTATCCGGACTTTCTGCGGCTGCGTCGAGCCGCAGCGCGCTGGCG
CGCGCGCTGTCGCGCGGTGGACGCGCCGCTGAGGCGTTGCAGGGTCCGCT
GGCGTACAGCGTGGTGTTGCTGTTGCTGACGGCGTTGCTGTGGCAAAGCG
CGGCCGCGGCGGTGGCAGTGGCCAACATGTGCGTGGGCGACGGGCTGGCC
GAGGTGGTGGGGCGCCGCCTGCCCTCGCTCAAGTGGCCCGCCAGCGAGAA
GAGCGCCGCCGGCAGCGCCGCGTTCGTGGTCGGCGCCGCCGCGGCCAGCG
TGGCGCTTCTTTGGTGGTTCTCGCGCTTCGGACTTGCTCACACACCTACG
CCGGGCTCCGTCGCCGCCGTCGCGCTCATCGCCGTGCTCTGCGCCGCAGC
AGAGCTGTTAGCGGAGCGTTTCGGCGGCGACGACAACATCGCCGTTGCGG
CTTGCGCCACAGCGCTCGCGTTGCTGCTACTCGGCGACGGCGCCCCTGTG
CCGTTCAGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000131_pilon:230300..231211-

>Gchil7032.t1 ID=Gchil7032.t1|Name=Gchil7032.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000131_pilon:230300..231211- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCGGCGAGCTTCGCAGCGCCGTCGCTTGTGCGCCGCGATGCGCG
CCTCTGTCCGCAGCGCCGCCATCTGCATCGCGCGCGCCCCGCGCTGCATC
GCGTGGCTCCGCGTCGAAGTGCGTCGCGACCAATGTCAACGCGCGCCATG
CTGCTGCCCGAGTGGTCTGTGCCCAACTCGCACGACGCCGCGCTCACGGC
GGCCATTCTGGGCGCGGTGACTGTGTGGCTAGGCGCGTGGCAGCGCCTCA
CGGCGGCGGACGTAGTTTCATCTCGCACCACGCGCAAGGTGATCCACATC
AGCTGCGGCCCTGCGTTCCTGGCGTTGTGGCCGCTGTACAGCGAAGGCGC
GGGCGCGCGCGCGTTGGCCACGGCCGTGCCACTTCTTTTCTCGCTGGTGC
TGTTGGTATCCGGACTTTCTGCGGCTGCGTCGAGCCGCAGCGCGCTGGCG
CGCGCGCTGTCGCGCGGTGGACGCGCCGCTGAGGCGTTGCAGGGTCCGCT
GGCGTACAGCGTGGTGTTGCTGTTGCTGACGGCGTTGCTGTGGCAAAGCG
CGGCCGCGGCGGTGGCAGTGGCCAACATGTGCGTGGGCGACGGGCTGGCC
GAGGTGGTGGGGCGCCGCCTGCCCTCGCTCAAGTGGCCCGCCAGCGAGAA
GAGCGCCGCCGGCAGCGCCGCGTTCGTGGTCGGCGCCGCCGCGGCCAGCG
TGGCGCTTCTTTGGTGGTTCTCGCGCTTCGGACTTGCTCACACACCTACG
CCGGGCTCCGTCGCCGCCGTCGCGCTCATCGCCGTGCTCTGCGCCGCAGC
AGAGCTGTTAGCGGAGCGTTTCGGCGGCGACGACAACATCGCCGTTGCGG
CTTGCGCCACAGCGCTCGCGTTGCTGCTACTCGGCGACGGCGCCCCTGTG
CCGTTCAGCTAA
back to top