Gchil7020.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7020.t1
Unique Name	Gchil7020.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	786

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:50142..52499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7020	Gchil7020	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 50142..52499 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7020.t1.start1	Gchil7020.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 50142..50144 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7020.t1.CDS1	Gchil7020.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 50142..52499 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7020.t1.exon1	Gchil7020.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 50142..52499 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7020.t1.stop1	Gchil7020.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 52497..52499 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7020.t1	Gchil7020.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 50142..52499 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:50142..52499+
coding sequence from alignment at tig00000131_pilon:50142..52499+

mRNA sequence

>Gchil7020.t1 ID=Gchil7020.t1|Name=Gchil7020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp
MSSPSPPPSSPPSSPSPPSSPSSPSSPSSPSPSPPPSLDSASDTERDAPS
SSALATQRYARATAQQAHATLRTAAQRAAFLHAVLGDASLAQQDALYDAA
LLAALHVRARELLRTTTAALHDAAASTERHHAERHHAERHNAVDALLALL
TLFAAQWPLLLDVAARERERVLRAVMAAAHMTRRRERGAARVLGALRALC
VTDDMRRRAMLHGVVSLTLRMHAAHAASRPIAVRAVALLANVAFGCAHRK
RAIARAGAFDMLAAVLSNFPRDHALLLRVALAVRNLAHGSQLNQFVAANA
GIVDALAAALLRFRAAAAHAPLRLQCVMALHTLCHDHQPNRHRLVRFHPC
SPDLPVPDLPVSDLPVCHNPTHDAAAQVLDEHGDVVVDEEQPLASHLTPH
FTHGAALSPGKPLPAAAPSPSASTTTSATSATSATSATSATNHPPLTRAI
IHTMRRDPDHALLLHTALSLLTLLALHHPDVQLAIAQQGALHVAVAAIKR
HPHHTSIATAAAALIRCLCVHPANRTLLTSGLPVLISALNNHRAHPHVVC
ELAAALSNAVFENEKNSACVVNNRAIPAVILAMHHCPETDLMLLDAALCA
LRNFVHSSYSAALSAVNDAAIPAAVAALDRTKDAATHGQRVVQEQAVLFL
LDLAELAPHAKKHMRTAQAADWIENALAKLPIHHYAELHSAADSLLAELA
HPTHSDAPFANSRTASSSQPPSAKPSFIPSRRLFGAFLLPRRAATTTDTR
KRFVARSMPLTSPTADAPRKTKRLSKRLRFGTTLS*

spliced messenger RNA

>Gchil7020.t1 ID=Gchil7020.t1|Name=Gchil7020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2358bp|location=Sequence derived from alignment at tig00000131_pilon:50142..52499+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtcgtcgccgtcgccgccaccgtcgtcgccaccgtcgtcgccgtcgcc
accgtcttcgccgtcttcgccgtcttcgccgtcttcgccgtcgccgtcgc
cgccaccgtcgcTCGACAGCGCCAGTGACACGGAGCGCGACGCACCGTCA
AGCAGCGCGCTGGCGACGCAGCGCTACGCGCGCGCCACGGCGCAACAAGC
GCACGCTACGCTGCGCACGGCCGCGCAGCGCGCCGCCTTCCTGCACGCCG
TGCTGGGCGACGCGTCGCTCGCGCAGCAAGACGCCTTGTACGACGCGGCG
TTGCTCGCCGCGCTGCACGTGCGCGCGCGCGAGTTACTCCGAAccaccac
cgccgcgctgcacgacgccgccgccagcaccgagcgccaccacgccgagc
gccaccacgccgAGCGCCACAACGCCGTGGACGCGCTGCTGGCGTTGCTC
ACGCTGTTCGCGGCGCAGTGGCCACTGCTGCTGGACGTGGCGGCGCGCGA
GCGCGAGCGCGTGCTTCGCGCCGTCATGGCCGCCGCGCACATGACGCGCC
GTCGTGAGCGCGGCGCCGCGCGCGTGTTGGGCGCCTTGCGCGCGCTCTGC
GTCACGGATGACATGCGTCGTCGCGCCATGCTGCACGGCGTCGTGTCGCT
CACGTTGCGAATGCACGCCGCTCACGCCGCGTCGCGCCCCATCGCCGTGC
GCGCCGTCGCCCTTCTCGCCAACGTCGCCTTCGGCTGTGCGCATCGCAAG
CGCGCCATTGCGCGCGCCGGCGCCTTCGACATGCTGGCCGCCGTGCTCAG
CAACTTTCCGCGCGACCACGCCCTGTTGCTGCGCGTCGCCCTCGCCGTGC
GCAATCTGGCTCACGGCTCGCAGCTCAACCAGTTTGTGGCCGCCAACGCC
GGCATCGTCGACGCTCTGGCCGCCGCCTTGCTGCGCTTTCGTGCCGCCGC
CGCCCACGCCCCCCTCCGTCTGCAGTGCGTCATGGCCCTGCACACCCTTT
GCCACGACCACCAGCCCAACCGCCACCGCCTCGTCCGCTTTCACCCCTGC
TCCCCCGACCTTCCTGTGCCCGACCTTCCTGTGTCCGACCTTCCTGTTTG
CCACAACCCCACCCACGATGCTGCCGCCCAAGTGCTCGACGAGCACGGCG
ACGTCGTCGTCGACgaggagcagccgctcgcctctcacctcaccccgcac
ttcacccacggcgccgccctctctcccggcaagcccctgcccgccgccgc
gccctcgccctccgcctccaccaccacctccgccacctccgccacctccg
ccacctccgccacttccgccaccAACCACCCCCCCCTCACGCGAGCCATC
ATCCACACCATGCGAAGGGACCCCGACCACGCCCTGCTCCTGCACACCGC
CTTGTCGCTGCTCACCCTGCTCGCCCTGCACCACCCCGACGTCCAGCTCG
CCATCGCCCAGCAGGGCGCCCTTCACGTcgccgtcgccgccatcaaacga
cacccgcaccacacctccatcgccaccgccgccgccgccctcatccgcTG
CCTGTGTGTGCACCCAGCCAACCGCACCCTCCTCACCTCCGGCCTCCCCG
TCCTCATCTCCGCCCTCAACAACCACCGCGCCCACCCGCACGTCGTGTGC
GAGCTCGCCGCCGCTCTCAGCAACGCCGTCTTCGAAAACGAAAAGAACAG
TGCCTGTGTCGTCAACAACCGCGCCATCCCCGCTGTCATCCTCGCCATGC
ACCACTGCCCCGAAACCGACCTCATGCTGTTGGACGCCGCTCTGTGCGCG
CTGCGCAATTTTGTGCACTCCAGCTACAGcgccgccctttccgccgtcaa
cgacgccgccatccccgccgccgtcgccgccCTGGACCGCACCAAGGACG
CCGCCACCCACGGCCAGCGCGTGGTGCAAGAGCAGGCCGTGCTGTTCCTG
CTCGACCTCGCCGAGCTCGCCCCGCACGCCAAAAAGCACATGCGCACCGC
CCAAGCCGCCGACTGGATTGAAAACGCGCTGGCAAAGCTCCCCATCCACC
ACTACGCTGAGCTGCACTCCGCCGCCGACTCGCTGCTGGCCGAGCTTGCG
CACCCGACCCACTCCGATGCCCCGTTTGCCAACTCGCGCACCGCCAGCTC
CAGTCAACCACCCAGCGCCAAGCCGTCCTTCATTCCCTCACGCCGCCTGT
TTGGCGCGTTTCTTCTGCCCAGACGCGCCGCTACCACCACCGACACGCGC
AAGAGATTTGTCGCGCGTAGCATGCCGCTCACTAGCCCCACGGCTGATGC
GCCGCGCAAGACCAAGCGACTCTCGAAACGGCTGCGCTTTGGAACCACCC
TGTCGTGA

protein sequence of Gchil7020.t1

>Gchil7020.t1 ID=Gchil7020.t1|Name=Gchil7020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=786bp
MSSPSPPPSSPPSSPSPPSSPSSPSSPSSPSPSPPPSLDSASDTERDAPS
SSALATQRYARATAQQAHATLRTAAQRAAFLHAVLGDASLAQQDALYDAA
LLAALHVRARELLRTTTAALHDAAASTERHHAERHHAERHNAVDALLALL
TLFAAQWPLLLDVAARERERVLRAVMAAAHMTRRRERGAARVLGALRALC
VTDDMRRRAMLHGVVSLTLRMHAAHAASRPIAVRAVALLANVAFGCAHRK
RAIARAGAFDMLAAVLSNFPRDHALLLRVALAVRNLAHGSQLNQFVAANA
GIVDALAAALLRFRAAAAHAPLRLQCVMALHTLCHDHQPNRHRLVRFHPC
SPDLPVPDLPVSDLPVCHNPTHDAAAQVLDEHGDVVVDEEQPLASHLTPH
FTHGAALSPGKPLPAAAPSPSASTTTSATSATSATSATSATNHPPLTRAI
IHTMRRDPDHALLLHTALSLLTLLALHHPDVQLAIAQQGALHVAVAAIKR
HPHHTSIATAAAALIRCLCVHPANRTLLTSGLPVLISALNNHRAHPHVVC
ELAAALSNAVFENEKNSACVVNNRAIPAVILAMHHCPETDLMLLDAALCA
LRNFVHSSYSAALSAVNDAAIPAAVAALDRTKDAATHGQRVVQEQAVLFL
LDLAELAPHAKKHMRTAQAADWIENALAKLPIHHYAELHSAADSLLAELA
HPTHSDAPFANSRTASSSQPPSAKPSFIPSRRLFGAFLLPRRAATTTDTR
KRFVARSMPLTSPTADAPRKTKRLSKRLRFGTTLS*

mRNA from alignment at tig00000131_pilon:50142..52499+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7020.t1 ID=Gchil7020.t1|Name=Gchil7020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2358bp|location=Sequence derived from alignment at tig00000131_pilon:50142..52499+ (Gracilaria chilensis NLEC103_M9 male)
atgtcgtcgccgtcgccgccaccgtcgtcgccaccgtcgtcgccgtcgcc
accgtcttcgccgtcttcgccgtcttcgccgtcttcgccgtcgccgtcgc
cgccaccgtcgcTCGACAGCGCCAGTGACACGGAGCGCGACGCACCGTCA
AGCAGCGCGCTGGCGACGCAGCGCTACGCGCGCGCCACGGCGCAACAAGC
GCACGCTACGCTGCGCACGGCCGCGCAGCGCGCCGCCTTCCTGCACGCCG
TGCTGGGCGACGCGTCGCTCGCGCAGCAAGACGCCTTGTACGACGCGGCG
TTGCTCGCCGCGCTGCACGTGCGCGCGCGCGAGTTACTCCGAAccaccac
cgccgcgctgcacgacgccgccgccagcaccgagcgccaccacgccgagc
gccaccacgccgAGCGCCACAACGCCGTGGACGCGCTGCTGGCGTTGCTC
ACGCTGTTCGCGGCGCAGTGGCCACTGCTGCTGGACGTGGCGGCGCGCGA
GCGCGAGCGCGTGCTTCGCGCCGTCATGGCCGCCGCGCACATGACGCGCC
GTCGTGAGCGCGGCGCCGCGCGCGTGTTGGGCGCCTTGCGCGCGCTCTGC
GTCACGGATGACATGCGTCGTCGCGCCATGCTGCACGGCGTCGTGTCGCT
CACGTTGCGAATGCACGCCGCTCACGCCGCGTCGCGCCCCATCGCCGTGC
GCGCCGTCGCCCTTCTCGCCAACGTCGCCTTCGGCTGTGCGCATCGCAAG
CGCGCCATTGCGCGCGCCGGCGCCTTCGACATGCTGGCCGCCGTGCTCAG
CAACTTTCCGCGCGACCACGCCCTGTTGCTGCGCGTCGCCCTCGCCGTGC
GCAATCTGGCTCACGGCTCGCAGCTCAACCAGTTTGTGGCCGCCAACGCC
GGCATCGTCGACGCTCTGGCCGCCGCCTTGCTGCGCTTTCGTGCCGCCGC
CGCCCACGCCCCCCTCCGTCTGCAGTGCGTCATGGCCCTGCACACCCTTT
GCCACGACCACCAGCCCAACCGCCACCGCCTCGTCCGCTTTCACCCCTGC
TCCCCCGACCTTCCTGTGCCCGACCTTCCTGTGTCCGACCTTCCTGTTTG
CCACAACCCCACCCACGATGCTGCCGCCCAAGTGCTCGACGAGCACGGCG
ACGTCGTCGTCGACgaggagcagccgctcgcctctcacctcaccccgcac
ttcacccacggcgccgccctctctcccggcaagcccctgcccgccgccgc
gccctcgccctccgcctccaccaccacctccgccacctccgccacctccg
ccacctccgccacttccgccaccAACCACCCCCCCCTCACGCGAGCCATC
ATCCACACCATGCGAAGGGACCCCGACCACGCCCTGCTCCTGCACACCGC
CTTGTCGCTGCTCACCCTGCTCGCCCTGCACCACCCCGACGTCCAGCTCG
CCATCGCCCAGCAGGGCGCCCTTCACGTcgccgtcgccgccatcaaacga
cacccgcaccacacctccatcgccaccgccgccgccgccctcatccgcTG
CCTGTGTGTGCACCCAGCCAACCGCACCCTCCTCACCTCCGGCCTCCCCG
TCCTCATCTCCGCCCTCAACAACCACCGCGCCCACCCGCACGTCGTGTGC
GAGCTCGCCGCCGCTCTCAGCAACGCCGTCTTCGAAAACGAAAAGAACAG
TGCCTGTGTCGTCAACAACCGCGCCATCCCCGCTGTCATCCTCGCCATGC
ACCACTGCCCCGAAACCGACCTCATGCTGTTGGACGCCGCTCTGTGCGCG
CTGCGCAATTTTGTGCACTCCAGCTACAGcgccgccctttccgccgtcaa
cgacgccgccatccccgccgccgtcgccgccCTGGACCGCACCAAGGACG
CCGCCACCCACGGCCAGCGCGTGGTGCAAGAGCAGGCCGTGCTGTTCCTG
CTCGACCTCGCCGAGCTCGCCCCGCACGCCAAAAAGCACATGCGCACCGC
CCAAGCCGCCGACTGGATTGAAAACGCGCTGGCAAAGCTCCCCATCCACC
ACTACGCTGAGCTGCACTCCGCCGCCGACTCGCTGCTGGCCGAGCTTGCG
CACCCGACCCACTCCGATGCCCCGTTTGCCAACTCGCGCACCGCCAGCTC
CAGTCAACCACCCAGCGCCAAGCCGTCCTTCATTCCCTCACGCCGCCTGT
TTGGCGCGTTTCTTCTGCCCAGACGCGCCGCTACCACCACCGACACGCGC
AAGAGATTTGTCGCGCGTAGCATGCCGCTCACTAGCCCCACGGCTGATGC
GCCGCGCAAGACCAAGCGACTCTCGAAACGGCTGCGCTTTGGAACCACCC
TGTCGTGA

Coding sequence (CDS) from alignment at tig00000131_pilon:50142..52499+

>Gchil7020.t1 ID=Gchil7020.t1|Name=Gchil7020.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2358bp|location=Sequence derived from alignment at tig00000131_pilon:50142..52499+ (Gracilaria chilensis NLEC103_M9 male)
atgtcgtcgccgtcgccgccaccgtcgtcgccaccgtcgtcgccgtcgcc
accgtcttcgccgtcttcgccgtcttcgccgtcttcgccgtcgccgtcgc
cgccaccgtcgcTCGACAGCGCCAGTGACACGGAGCGCGACGCACCGTCA
AGCAGCGCGCTGGCGACGCAGCGCTACGCGCGCGCCACGGCGCAACAAGC
GCACGCTACGCTGCGCACGGCCGCGCAGCGCGCCGCCTTCCTGCACGCCG
TGCTGGGCGACGCGTCGCTCGCGCAGCAAGACGCCTTGTACGACGCGGCG
TTGCTCGCCGCGCTGCACGTGCGCGCGCGCGAGTTACTCCGAAccaccac
cgccgcgctgcacgacgccgccgccagcaccgagcgccaccacgccgagc
gccaccacgccgAGCGCCACAACGCCGTGGACGCGCTGCTGGCGTTGCTC
ACGCTGTTCGCGGCGCAGTGGCCACTGCTGCTGGACGTGGCGGCGCGCGA
GCGCGAGCGCGTGCTTCGCGCCGTCATGGCCGCCGCGCACATGACGCGCC
GTCGTGAGCGCGGCGCCGCGCGCGTGTTGGGCGCCTTGCGCGCGCTCTGC
GTCACGGATGACATGCGTCGTCGCGCCATGCTGCACGGCGTCGTGTCGCT
CACGTTGCGAATGCACGCCGCTCACGCCGCGTCGCGCCCCATCGCCGTGC
GCGCCGTCGCCCTTCTCGCCAACGTCGCCTTCGGCTGTGCGCATCGCAAG
CGCGCCATTGCGCGCGCCGGCGCCTTCGACATGCTGGCCGCCGTGCTCAG
CAACTTTCCGCGCGACCACGCCCTGTTGCTGCGCGTCGCCCTCGCCGTGC
GCAATCTGGCTCACGGCTCGCAGCTCAACCAGTTTGTGGCCGCCAACGCC
GGCATCGTCGACGCTCTGGCCGCCGCCTTGCTGCGCTTTCGTGCCGCCGC
CGCCCACGCCCCCCTCCGTCTGCAGTGCGTCATGGCCCTGCACACCCTTT
GCCACGACCACCAGCCCAACCGCCACCGCCTCGTCCGCTTTCACCCCTGC
TCCCCCGACCTTCCTGTGCCCGACCTTCCTGTGTCCGACCTTCCTGTTTG
CCACAACCCCACCCACGATGCTGCCGCCCAAGTGCTCGACGAGCACGGCG
ACGTCGTCGTCGACgaggagcagccgctcgcctctcacctcaccccgcac
ttcacccacggcgccgccctctctcccggcaagcccctgcccgccgccgc
gccctcgccctccgcctccaccaccacctccgccacctccgccacctccg
ccacctccgccacttccgccaccAACCACCCCCCCCTCACGCGAGCCATC
ATCCACACCATGCGAAGGGACCCCGACCACGCCCTGCTCCTGCACACCGC
CTTGTCGCTGCTCACCCTGCTCGCCCTGCACCACCCCGACGTCCAGCTCG
CCATCGCCCAGCAGGGCGCCCTTCACGTcgccgtcgccgccatcaaacga
cacccgcaccacacctccatcgccaccgccgccgccgccctcatccgcTG
CCTGTGTGTGCACCCAGCCAACCGCACCCTCCTCACCTCCGGCCTCCCCG
TCCTCATCTCCGCCCTCAACAACCACCGCGCCCACCCGCACGTCGTGTGC
GAGCTCGCCGCCGCTCTCAGCAACGCCGTCTTCGAAAACGAAAAGAACAG
TGCCTGTGTCGTCAACAACCGCGCCATCCCCGCTGTCATCCTCGCCATGC
ACCACTGCCCCGAAACCGACCTCATGCTGTTGGACGCCGCTCTGTGCGCG
CTGCGCAATTTTGTGCACTCCAGCTACAGcgccgccctttccgccgtcaa
cgacgccgccatccccgccgccgtcgccgccCTGGACCGCACCAAGGACG
CCGCCACCCACGGCCAGCGCGTGGTGCAAGAGCAGGCCGTGCTGTTCCTG
CTCGACCTCGCCGAGCTCGCCCCGCACGCCAAAAAGCACATGCGCACCGC
CCAAGCCGCCGACTGGATTGAAAACGCGCTGGCAAAGCTCCCCATCCACC
ACTACGCTGAGCTGCACTCCGCCGCCGACTCGCTGCTGGCCGAGCTTGCG
CACCCGACCCACTCCGATGCCCCGTTTGCCAACTCGCGCACCGCCAGCTC
CAGTCAACCACCCAGCGCCAAGCCGTCCTTCATTCCCTCACGCCGCCTGT
TTGGCGCGTTTCTTCTGCCCAGACGCGCCGCTACCACCACCGACACGCGC
AAGAGATTTGTCGCGCGTAGCATGCCGCTCACTAGCCCCACGGCTGATGC
GCCGCGCAAGACCAAGCGACTCTCGAAACGGCTGCGCTTTGGAACCACCC
TGTCGTGA