Gchil7018.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7018.t1
Unique Name	Gchil7018.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000131_pilon	contig	tig00000131_pilon:41213..43261 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0T2Z7
PFAMs	DEP,Pyr_redox_2,Pyr_redox_dim
Max annot lvl	2836\|Bacillariophyta
Evalue	7.68e-250
EggNOG OGs	COG1249@1\|root,KOG1335@2759\|Eukaryota,2XE28@2836\|Bacillariophyta
Description	Glucose inhibited division protein A
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7018	Gchil7018	Gracilaria chilensis NLEC103_M9 male	gene	tig00000131_pilon 41213..43261 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7018.t1.start1	Gchil7018.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000131_pilon 41213..41215 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7018.t1.CDS1	Gchil7018.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000131_pilon 41213..43261 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7018.t1.exon1	Gchil7018.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000131_pilon 41213..43261 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7018.t1.stop1	Gchil7018.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000131_pilon 43259..43261 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7018.t1	Gchil7018.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000131_pilon 41213..43261 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000131_pilon:41213..43261+
coding sequence from alignment at tig00000131_pilon:41213..43261+

mRNA sequence

>Gchil7018.t1 ID=Gchil7018.t1|Name=Gchil7018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=683bp
MTSASPANNAAAPAAHDPPELDLGELATRFKSNVSIRDRRYRLQTYKDCF
VGSEAVQWLVTSGTAQSRADAVRLGLLMQEAGLIEHCLRDHDFKDEDLFY
KFIEDSERGGVPKTDGRLVSWSDFVDTPFTAGRSLQPRVPESNDDSTNTA
TQVEQAVWPLDELNVKLLDNVHPPEWIEPVYDGVYNLVVIGAGAGGLVTS
SGAAGLGAKVALIEANRLGGDCLNVGCVPSKSLIHAANLAHTLRDQNHLL
EAGLSFDGPVKIDFGKTMKRLRRVRADISSADSATRYTRKLGVDVYFGYA
KFTSESTVEVNGNTLQFRKAIIATGGYPSIPPIPGLRELHEKSVKDMDNQ
PHTAIMTNETFFNLTQLPKRLGVIGTGVIGMELGQAMQRLGSSVVMFGRS
GQVLPKEDKDLSVLIKEQMIEDGVTFRLDVATYGVVEHTGNVSPEGYEEV
RMVTEEDGERKEYLFDAMLIAAGRKPNVDGLNLKAAGVEYDNKRGLIVND
MLQTTNPRIYGAGDVCSAYKFTHAADFMARMVIRNALFFGKDKMSNLLIP
YATFTSPEIAHVGLYETDMKEKGIRFKTFEKHFDDNDRAICDGTTVGMVR
IHVEEKSDTILGASIVGVGAGNMISEITLAMQSKTGLGALASVIHPYPTT
AEAVRQTGDLYNRTRLTNTVKQLLRGIVRVQR*

spliced messenger RNA

>Gchil7018.t1 ID=Gchil7018.t1|Name=Gchil7018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000131_pilon:41213..43261+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTGCGTCTCCCGCCAACAACGCTGCCGCGCCCGCCGCCCACGA
CCCGCCCGAGCTTGACTTGGGCGAGCTTGCTACACGCTTCAAGAGCAATG
TGTCCATACGCGACCGCCGCTACCGCCTGCAGACCTACAAGGACTGCTTT
GTTGGCTCTGAGGCCGTGCAGTGGCTCGTCACCAGCGGCACTGCCCAATC
CAGGGCCGATGCCGTCAGACTGGGCCTACTCATGCAGGAGGCCGGTCTCA
TAGAACACTGCCTCCGCGACCACGACTTCAAGGACGAGGACCTGTTTTAC
AAGTTTATTGAGGACTCGGAGCGCGGCGGCGTCCCCAAGACCGACGGTCG
CCTCGTGTCCTGGTCCGACTTTGTCGACACCCCCTTCACCGCCGGCCGTA
GCCTGCAGCCAAGAGTGCCTGAATCGAACGACGACAGCACCAACACAGCC
ACACAGGTGGAACAAGCCGTGTGGCCCTTGGATGAGCTCAACGTCAAACT
ATTGGACAACGTACATCCGCCAGAGTGGATAGAACCCGTTTACGACGGCG
TTTATAATCTCGTCGTTATAGGCGCCGGCGCCGGCGGGCTTGTCACGTCC
TCCGGTGCTGCCGGCCTGGGCGCCAAGGTTGCGCTCATTGAAGCTAATCG
CCTTGGTGGTGACTGTCTCAATGTTGGCTGTGTTCCTTCCAAGTCTCTCA
TACACGCCGCAAATCTTGCACACACGCTTCGCGATCAGAACCATTTGCTC
GAAGCGGGCCTCTCTTTCGACGGCCCTGTCAAGATTGATTTTGGCAAAAC
AATGAAGCGTCTGCGACGCGTTCGCGCCGATATCAGTAGCGCTGATTCTG
CTACCCGCTACACACGCAAACTTGGTGTTGATGTATACTTTGGCTATGCA
AAGTTCACGTCGGAGTCCACCGTGGAGGTGAATGGCAACACCCTGCAGTT
CAGAAAGGCAATCATCGCCACCGGCGGCTATCCTTCAATTCCGCCCATTC
CTGGTCTCAGGGAGTTGCATGAGAAGAGTGTCAAGGATATGGACAACCAA
CCACACACGGCCATCATGACCAACGAAACCTTTTTCAATCTCACTCAGCT
TCCAAAACGTCTCGGTGTCATCGGGACGGGCGTCATTGGCATGGAACTTG
GTCAGGCTATGCAGAGACTTGGCTCTTCTGTCGTGATGTTTGGCCGTTCG
GGCCAAGTTTTGCCTAAGGAAGACAAGGATCTCAGCGTGCTTATCAAAGA
GCAGATGATCGAGGACGGTGTGACGTTCAGGTTAGATGTGGCCACGTATG
GGGTGGTCGAACACACTGGCAACGTATCTCCAGAGGGGTACGAGGAAGTC
CGCATGGTGACAGAAGAAGATGGAGAGCGGAAGGAGTACCTGTTTGATGC
AATGCTGATTGCTGCTGGCAGGAAGCCAAATGTGGACGGTCTGAACTTGA
AAGCTGCGGGCGTCGAGTATGACAATAAGCGTGGATTGATTGTAAATGAC
ATGTTACAAACTACCAATCCCAGAATCTATGGCGCTGGGGACGTGTGTAG
TGCGTACAAATTCACACACGCTGCGGACTTTATGGCAAGAATGGTTATTC
GTAACGCGCTCTTCTTTGGAAAAGATAAGATGTCGAACCTGCTTATTCCG
TATGCCACTTTTACGTCGCCGGAAATTGCGCACGTCGGTCTGTATGAAAC
TGATATGAAAGAGAAGGGCATCAGGTTCAAGACTTTTGAAAAACACTTTG
ATGATAATGACCGCGCTATCTGTGATGGAACCACTGTCGGTATGGTGCGC
ATTCATGTGGAGGAGAAATCGGATACCATCCTGGGCGCATCGATTGTTGG
GGTTGGTGCGGGCAATATGATCAGCGAGATTACGCTAGCCATGCAGTCAA
AGACGGGGTTGGGTGCCCTAGCTTCTGTGATCCATCCGTATCCTACGACG
GCTGAGGCTGTGCGGCAGACTGGTGATCTCTACAACCGAACGCGCTTGAC
TAATACTGTGAAGCAATTACTTCGTGGCATAGTTCGTGTGCAACGTTAG

protein sequence of Gchil7018.t1

>Gchil7018.t1 ID=Gchil7018.t1|Name=Gchil7018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=683bp
MTSASPANNAAAPAAHDPPELDLGELATRFKSNVSIRDRRYRLQTYKDCF
VGSEAVQWLVTSGTAQSRADAVRLGLLMQEAGLIEHCLRDHDFKDEDLFY
KFIEDSERGGVPKTDGRLVSWSDFVDTPFTAGRSLQPRVPESNDDSTNTA
TQVEQAVWPLDELNVKLLDNVHPPEWIEPVYDGVYNLVVIGAGAGGLVTS
SGAAGLGAKVALIEANRLGGDCLNVGCVPSKSLIHAANLAHTLRDQNHLL
EAGLSFDGPVKIDFGKTMKRLRRVRADISSADSATRYTRKLGVDVYFGYA
KFTSESTVEVNGNTLQFRKAIIATGGYPSIPPIPGLRELHEKSVKDMDNQ
PHTAIMTNETFFNLTQLPKRLGVIGTGVIGMELGQAMQRLGSSVVMFGRS
GQVLPKEDKDLSVLIKEQMIEDGVTFRLDVATYGVVEHTGNVSPEGYEEV
RMVTEEDGERKEYLFDAMLIAAGRKPNVDGLNLKAAGVEYDNKRGLIVND
MLQTTNPRIYGAGDVCSAYKFTHAADFMARMVIRNALFFGKDKMSNLLIP
YATFTSPEIAHVGLYETDMKEKGIRFKTFEKHFDDNDRAICDGTTVGMVR
IHVEEKSDTILGASIVGVGAGNMISEITLAMQSKTGLGALASVIHPYPTT
AEAVRQTGDLYNRTRLTNTVKQLLRGIVRVQR*

mRNA from alignment at tig00000131_pilon:41213..43261+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7018.t1 ID=Gchil7018.t1|Name=Gchil7018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000131_pilon:41213..43261+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCTGCGTCTCCCGCCAACAACGCTGCCGCGCCCGCCGCCCACGA
CCCGCCCGAGCTTGACTTGGGCGAGCTTGCTACACGCTTCAAGAGCAATG
TGTCCATACGCGACCGCCGCTACCGCCTGCAGACCTACAAGGACTGCTTT
GTTGGCTCTGAGGCCGTGCAGTGGCTCGTCACCAGCGGCACTGCCCAATC
CAGGGCCGATGCCGTCAGACTGGGCCTACTCATGCAGGAGGCCGGTCTCA
TAGAACACTGCCTCCGCGACCACGACTTCAAGGACGAGGACCTGTTTTAC
AAGTTTATTGAGGACTCGGAGCGCGGCGGCGTCCCCAAGACCGACGGTCG
CCTCGTGTCCTGGTCCGACTTTGTCGACACCCCCTTCACCGCCGGCCGTA
GCCTGCAGCCAAGAGTGCCTGAATCGAACGACGACAGCACCAACACAGCC
ACACAGGTGGAACAAGCCGTGTGGCCCTTGGATGAGCTCAACGTCAAACT
ATTGGACAACGTACATCCGCCAGAGTGGATAGAACCCGTTTACGACGGCG
TTTATAATCTCGTCGTTATAGGCGCCGGCGCCGGCGGGCTTGTCACGTCC
TCCGGTGCTGCCGGCCTGGGCGCCAAGGTTGCGCTCATTGAAGCTAATCG
CCTTGGTGGTGACTGTCTCAATGTTGGCTGTGTTCCTTCCAAGTCTCTCA
TACACGCCGCAAATCTTGCACACACGCTTCGCGATCAGAACCATTTGCTC
GAAGCGGGCCTCTCTTTCGACGGCCCTGTCAAGATTGATTTTGGCAAAAC
AATGAAGCGTCTGCGACGCGTTCGCGCCGATATCAGTAGCGCTGATTCTG
CTACCCGCTACACACGCAAACTTGGTGTTGATGTATACTTTGGCTATGCA
AAGTTCACGTCGGAGTCCACCGTGGAGGTGAATGGCAACACCCTGCAGTT
CAGAAAGGCAATCATCGCCACCGGCGGCTATCCTTCAATTCCGCCCATTC
CTGGTCTCAGGGAGTTGCATGAGAAGAGTGTCAAGGATATGGACAACCAA
CCACACACGGCCATCATGACCAACGAAACCTTTTTCAATCTCACTCAGCT
TCCAAAACGTCTCGGTGTCATCGGGACGGGCGTCATTGGCATGGAACTTG
GTCAGGCTATGCAGAGACTTGGCTCTTCTGTCGTGATGTTTGGCCGTTCG
GGCCAAGTTTTGCCTAAGGAAGACAAGGATCTCAGCGTGCTTATCAAAGA
GCAGATGATCGAGGACGGTGTGACGTTCAGGTTAGATGTGGCCACGTATG
GGGTGGTCGAACACACTGGCAACGTATCTCCAGAGGGGTACGAGGAAGTC
CGCATGGTGACAGAAGAAGATGGAGAGCGGAAGGAGTACCTGTTTGATGC
AATGCTGATTGCTGCTGGCAGGAAGCCAAATGTGGACGGTCTGAACTTGA
AAGCTGCGGGCGTCGAGTATGACAATAAGCGTGGATTGATTGTAAATGAC
ATGTTACAAACTACCAATCCCAGAATCTATGGCGCTGGGGACGTGTGTAG
TGCGTACAAATTCACACACGCTGCGGACTTTATGGCAAGAATGGTTATTC
GTAACGCGCTCTTCTTTGGAAAAGATAAGATGTCGAACCTGCTTATTCCG
TATGCCACTTTTACGTCGCCGGAAATTGCGCACGTCGGTCTGTATGAAAC
TGATATGAAAGAGAAGGGCATCAGGTTCAAGACTTTTGAAAAACACTTTG
ATGATAATGACCGCGCTATCTGTGATGGAACCACTGTCGGTATGGTGCGC
ATTCATGTGGAGGAGAAATCGGATACCATCCTGGGCGCATCGATTGTTGG
GGTTGGTGCGGGCAATATGATCAGCGAGATTACGCTAGCCATGCAGTCAA
AGACGGGGTTGGGTGCCCTAGCTTCTGTGATCCATCCGTATCCTACGACG
GCTGAGGCTGTGCGGCAGACTGGTGATCTCTACAACCGAACGCGCTTGAC
TAATACTGTGAAGCAATTACTTCGTGGCATAGTTCGTGTGCAACGTTAG

Coding sequence (CDS) from alignment at tig00000131_pilon:41213..43261+

>Gchil7018.t1 ID=Gchil7018.t1|Name=Gchil7018.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2049bp|location=Sequence derived from alignment at tig00000131_pilon:41213..43261+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCTGCGTCTCCCGCCAACAACGCTGCCGCGCCCGCCGCCCACGA
CCCGCCCGAGCTTGACTTGGGCGAGCTTGCTACACGCTTCAAGAGCAATG
TGTCCATACGCGACCGCCGCTACCGCCTGCAGACCTACAAGGACTGCTTT
GTTGGCTCTGAGGCCGTGCAGTGGCTCGTCACCAGCGGCACTGCCCAATC
CAGGGCCGATGCCGTCAGACTGGGCCTACTCATGCAGGAGGCCGGTCTCA
TAGAACACTGCCTCCGCGACCACGACTTCAAGGACGAGGACCTGTTTTAC
AAGTTTATTGAGGACTCGGAGCGCGGCGGCGTCCCCAAGACCGACGGTCG
CCTCGTGTCCTGGTCCGACTTTGTCGACACCCCCTTCACCGCCGGCCGTA
GCCTGCAGCCAAGAGTGCCTGAATCGAACGACGACAGCACCAACACAGCC
ACACAGGTGGAACAAGCCGTGTGGCCCTTGGATGAGCTCAACGTCAAACT
ATTGGACAACGTACATCCGCCAGAGTGGATAGAACCCGTTTACGACGGCG
TTTATAATCTCGTCGTTATAGGCGCCGGCGCCGGCGGGCTTGTCACGTCC
TCCGGTGCTGCCGGCCTGGGCGCCAAGGTTGCGCTCATTGAAGCTAATCG
CCTTGGTGGTGACTGTCTCAATGTTGGCTGTGTTCCTTCCAAGTCTCTCA
TACACGCCGCAAATCTTGCACACACGCTTCGCGATCAGAACCATTTGCTC
GAAGCGGGCCTCTCTTTCGACGGCCCTGTCAAGATTGATTTTGGCAAAAC
AATGAAGCGTCTGCGACGCGTTCGCGCCGATATCAGTAGCGCTGATTCTG
CTACCCGCTACACACGCAAACTTGGTGTTGATGTATACTTTGGCTATGCA
AAGTTCACGTCGGAGTCCACCGTGGAGGTGAATGGCAACACCCTGCAGTT
CAGAAAGGCAATCATCGCCACCGGCGGCTATCCTTCAATTCCGCCCATTC
CTGGTCTCAGGGAGTTGCATGAGAAGAGTGTCAAGGATATGGACAACCAA
CCACACACGGCCATCATGACCAACGAAACCTTTTTCAATCTCACTCAGCT
TCCAAAACGTCTCGGTGTCATCGGGACGGGCGTCATTGGCATGGAACTTG
GTCAGGCTATGCAGAGACTTGGCTCTTCTGTCGTGATGTTTGGCCGTTCG
GGCCAAGTTTTGCCTAAGGAAGACAAGGATCTCAGCGTGCTTATCAAAGA
GCAGATGATCGAGGACGGTGTGACGTTCAGGTTAGATGTGGCCACGTATG
GGGTGGTCGAACACACTGGCAACGTATCTCCAGAGGGGTACGAGGAAGTC
CGCATGGTGACAGAAGAAGATGGAGAGCGGAAGGAGTACCTGTTTGATGC
AATGCTGATTGCTGCTGGCAGGAAGCCAAATGTGGACGGTCTGAACTTGA
AAGCTGCGGGCGTCGAGTATGACAATAAGCGTGGATTGATTGTAAATGAC
ATGTTACAAACTACCAATCCCAGAATCTATGGCGCTGGGGACGTGTGTAG
TGCGTACAAATTCACACACGCTGCGGACTTTATGGCAAGAATGGTTATTC
GTAACGCGCTCTTCTTTGGAAAAGATAAGATGTCGAACCTGCTTATTCCG
TATGCCACTTTTACGTCGCCGGAAATTGCGCACGTCGGTCTGTATGAAAC
TGATATGAAAGAGAAGGGCATCAGGTTCAAGACTTTTGAAAAACACTTTG
ATGATAATGACCGCGCTATCTGTGATGGAACCACTGTCGGTATGGTGCGC
ATTCATGTGGAGGAGAAATCGGATACCATCCTGGGCGCATCGATTGTTGG
GGTTGGTGCGGGCAATATGATCAGCGAGATTACGCTAGCCATGCAGTCAA
AGACGGGGTTGGGTGCCCTAGCTTCTGTGATCCATCCGTATCCTACGACG
GCTGAGGCTGTGCGGCAGACTGGTGATCTCTACAACCGAACGCGCTTGAC
TAATACTGTGAAGCAATTACTTCGTGGCATAGTTCGTGTGCAACGTTAG