Gchil6964.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6964.t1
Unique NameGchil6964.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length484
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:440582..442033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FP63
PFAMsEF-hand_5,HD_4,RelA_SpoT,TPR_16,TPR_19,TPR_8
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00951,ko:K20310
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
Evalue1.19e-16
EggNOG OGsCOG0457@1|root,KOG1124@2759|Eukaryota
EC2.7.6.5
Descriptioncellular component assembly
COG categoryO
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6964Gchil6964Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 440582..442033 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6964.t1.stop1Gchil6964.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 440582..440584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6964.t1.CDS1Gchil6964.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 440582..442033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6964.t1.exon1Gchil6964.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 440582..442033 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6964.t1.start1Gchil6964.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 442031..442033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6964.t1Gchil6964.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 440582..442033 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6964.t1 ID=Gchil6964.t1|Name=Gchil6964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=484bp
MTTKVEAHILREEQKPLYVPPSCTPSPPLPLQLDLLNYRARRYMYRSPRR
AAALFQRALLINSADGRAWLGLARLKEASRDYAQARRAFHDGVRACPQNA
HLLQAWGVFEQRRRAIARAHGLFKAAVRAQPTHAPSWVALALWHQRYDKD
YNRARKCVQKATEVQPHNYYAWQVWAQLESSLGNVQLARRYFEKSASVNA
NNAATLVAWACFEAVQSNFDMAIHTFEKAHKVSPRNVRAYVAHASVLERA
GYRNRARNMLVRAMRQRPNEAGPRQMMGILEYRDGRAQVAREMFESALAV
DRSHTPSWHAWACVELNCGNIERARDLFQHAIWAHPQSSHAVRTWHAWAS
LEMQQKQFGAARRYFAHAMEIDANNVAILTGMARLDAMTGDIVRARQLLE
KSIRLKPYMKSTWKLYEDLELAYGSVHRARMVYERCVLYMRQVDQRLVVS
DALPGDFRAGGMWIDALELSPNESAFDKIDEKD*
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spliced messenger RNA

>Gchil6964.t1 ID=Gchil6964.t1|Name=Gchil6964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00004398_pilon:440582..442033- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCAAGGTCGAGGCGCACATTCTTCGTGAAGAACAAAAGCCGTT
GTATGTACCACCTTCATGCACTCCTTCCCCGCCCCTTCCGCTTCAACTGG
ATCTTCTCAACTATCGCGCGCGTCGCTACATGTACCGCTCTCCAAGGCGC
GCTGCTGCCTTGTTTCAACGCGCCTTGCTAATCAACTCTGCCGACGGCCG
CGCATGGCTCGGCTTGGCCAGACTCAAGGAAGCCTCCCGCGACTATGCAC
AAGCCAGACGCGCCTTTCACGACGGCGTCAGAGCATGCCCCCAAAATGCG
CACCTGCTGCAAGCTTGGGGGGTGTTTGAACAGAGAAGGAGAGCGATTGC
AAGGGCGCATGGTTTGTTCAAAGCCGCCGTTCGCGCCCAACCTACACATG
CTCCATCCTGGGTCGCGCTCGCCTTGTGGCATCAACGCTATGATAAGGAT
TACAATCGGGCCAGAAAGTGTGTGCAAAAAGCCACCGAGGTGCAGCCACA
CAACTACTATGCGTGGCAGGTGTGGGCGCAATTGGAGAGCTCACTGGGAA
ACGTACAGCTAGCGCGACGATACTTTGAGAAGTCTGCATCGGTCAACGCG
AACAACGCTGCTACGTTGGTGGCGTGGGCGTGTTTCGAGGCGGTTCAAAG
CAACTTTGACATGGCCATTCACACGTTTGAGAAGGCGCACAAGGTGTCCC
CGAGAAACGTCCGCGCATATGTTGCGCACGCATCGGTTCTGGAACGTGCC
GGCTACAGAAATCGCGCTAGAAACATGCTGGTTCGTGCAATGCGACAACG
ACCAAACGAGGCCGGCCCGCGCCAAATGATGGGCATTCTCGAGTATCGTG
ATGGTCGTGCCCAAGTAGCGCGTGAAATGTTCGAGAGTGCGTTGGCTGTT
GACCGGTCGCACACGCCCAGCTGGCATGCTTGGGCGTGTGTGGAACTGAA
TTGTGGCAACATTGAGCGCGCAAGGGACTTGTTTCAACATGCCATCTGGG
CACATCCGCAGTCTTCACATGCCGTGCGAACGTGGCACGCATGGGCAAGC
CTGGAAATGCAACAGAAACAGTTTGGGGCCGCGAGAAGATACTTTGCGCA
CGCGATGGAAATTGACGCCAACAACGTGGCAATTCTTACTGGGATGGCTA
GACTTGATGCCATGACAGGCGACATTGTGAGGGCTAGACAGCTGTTGGAG
AAAAGTATTCGACTCAAGCCGTACATGAAGTCGACATGGAAGCTGTATGA
GGACTTGGAATTGGCTTATGGCTCTGTGCATCGCGCAAGGATGGTTTATG
AACGTTGCGTGCTGTATATGAGACAGGTTGATCAACGTTTGGTGGTGTCA
GATGCGTTGCCAGGTGACTTTCGTGCCGGGGGAATGTGGATTGATGCGCT
TGAGCTTAGCCCGAATGAAAGCGCTTTTGATAAAATTGATGAGAAGGACT
GA
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protein sequence of Gchil6964.t1

>Gchil6964.t1 ID=Gchil6964.t1|Name=Gchil6964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=484bp
MTTKVEAHILREEQKPLYVPPSCTPSPPLPLQLDLLNYRARRYMYRSPRR
AAALFQRALLINSADGRAWLGLARLKEASRDYAQARRAFHDGVRACPQNA
HLLQAWGVFEQRRRAIARAHGLFKAAVRAQPTHAPSWVALALWHQRYDKD
YNRARKCVQKATEVQPHNYYAWQVWAQLESSLGNVQLARRYFEKSASVNA
NNAATLVAWACFEAVQSNFDMAIHTFEKAHKVSPRNVRAYVAHASVLERA
GYRNRARNMLVRAMRQRPNEAGPRQMMGILEYRDGRAQVAREMFESALAV
DRSHTPSWHAWACVELNCGNIERARDLFQHAIWAHPQSSHAVRTWHAWAS
LEMQQKQFGAARRYFAHAMEIDANNVAILTGMARLDAMTGDIVRARQLLE
KSIRLKPYMKSTWKLYEDLELAYGSVHRARMVYERCVLYMRQVDQRLVVS
DALPGDFRAGGMWIDALELSPNESAFDKIDEKD*
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mRNA from alignment at tig00004398_pilon:440582..442033-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6964.t1 ID=Gchil6964.t1|Name=Gchil6964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at tig00004398_pilon:440582..442033- (Gracilaria chilensis NLEC103_M9 male)
ATGACCACCAAGGTCGAGGCGCACATTCTTCGTGAAGAACAAAAGCCGTT
GTATGTACCACCTTCATGCACTCCTTCCCCGCCCCTTCCGCTTCAACTGG
ATCTTCTCAACTATCGCGCGCGTCGCTACATGTACCGCTCTCCAAGGCGC
GCTGCTGCCTTGTTTCAACGCGCCTTGCTAATCAACTCTGCCGACGGCCG
CGCATGGCTCGGCTTGGCCAGACTCAAGGAAGCCTCCCGCGACTATGCAC
AAGCCAGACGCGCCTTTCACGACGGCGTCAGAGCATGCCCCCAAAATGCG
CACCTGCTGCAAGCTTGGGGGGTGTTTGAACAGAGAAGGAGAGCGATTGC
AAGGGCGCATGGTTTGTTCAAAGCCGCCGTTCGCGCCCAACCTACACATG
CTCCATCCTGGGTCGCGCTCGCCTTGTGGCATCAACGCTATGATAAGGAT
TACAATCGGGCCAGAAAGTGTGTGCAAAAAGCCACCGAGGTGCAGCCACA
CAACTACTATGCGTGGCAGGTGTGGGCGCAATTGGAGAGCTCACTGGGAA
ACGTACAGCTAGCGCGACGATACTTTGAGAAGTCTGCATCGGTCAACGCG
AACAACGCTGCTACGTTGGTGGCGTGGGCGTGTTTCGAGGCGGTTCAAAG
CAACTTTGACATGGCCATTCACACGTTTGAGAAGGCGCACAAGGTGTCCC
CGAGAAACGTCCGCGCATATGTTGCGCACGCATCGGTTCTGGAACGTGCC
GGCTACAGAAATCGCGCTAGAAACATGCTGGTTCGTGCAATGCGACAACG
ACCAAACGAGGCCGGCCCGCGCCAAATGATGGGCATTCTCGAGTATCGTG
ATGGTCGTGCCCAAGTAGCGCGTGAAATGTTCGAGAGTGCGTTGGCTGTT
GACCGGTCGCACACGCCCAGCTGGCATGCTTGGGCGTGTGTGGAACTGAA
TTGTGGCAACATTGAGCGCGCAAGGGACTTGTTTCAACATGCCATCTGGG
CACATCCGCAGTCTTCACATGCCGTGCGAACGTGGCACGCATGGGCAAGC
CTGGAAATGCAACAGAAACAGTTTGGGGCCGCGAGAAGATACTTTGCGCA
CGCGATGGAAATTGACGCCAACAACGTGGCAATTCTTACTGGGATGGCTA
GACTTGATGCCATGACAGGCGACATTGTGAGGGCTAGACAGCTGTTGGAG
AAAAGTATTCGACTCAAGCCGTACATGAAGTCGACATGGAAGCTGTATGA
GGACTTGGAATTGGCTTATGGCTCTGTGCATCGCGCAAGGATGGTTTATG
AACGTTGCGTGCTGTATATGAGACAGGTTGATCAACGTTTGGTGGTGTCA
GATGCGTTGCCAGGTGACTTTCGTGCCGGGGGAATGTGGATTGATGCGCT
TGAGCTTAGCCCGAATGAAAGCGCTTTTGATAAAATTGATGAGAAGGACT
GA
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Coding sequence (CDS) from alignment at tig00004398_pilon:440582..442033-

>Gchil6964.t1 ID=Gchil6964.t1|Name=Gchil6964.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1452bp|location=Sequence derived from alignment at tig00004398_pilon:440582..442033- (Gracilaria chilensis NLEC103_M9 male)
ATGACCACCAAGGTCGAGGCGCACATTCTTCGTGAAGAACAAAAGCCGTT
GTATGTACCACCTTCATGCACTCCTTCCCCGCCCCTTCCGCTTCAACTGG
ATCTTCTCAACTATCGCGCGCGTCGCTACATGTACCGCTCTCCAAGGCGC
GCTGCTGCCTTGTTTCAACGCGCCTTGCTAATCAACTCTGCCGACGGCCG
CGCATGGCTCGGCTTGGCCAGACTCAAGGAAGCCTCCCGCGACTATGCAC
AAGCCAGACGCGCCTTTCACGACGGCGTCAGAGCATGCCCCCAAAATGCG
CACCTGCTGCAAGCTTGGGGGGTGTTTGAACAGAGAAGGAGAGCGATTGC
AAGGGCGCATGGTTTGTTCAAAGCCGCCGTTCGCGCCCAACCTACACATG
CTCCATCCTGGGTCGCGCTCGCCTTGTGGCATCAACGCTATGATAAGGAT
TACAATCGGGCCAGAAAGTGTGTGCAAAAAGCCACCGAGGTGCAGCCACA
CAACTACTATGCGTGGCAGGTGTGGGCGCAATTGGAGAGCTCACTGGGAA
ACGTACAGCTAGCGCGACGATACTTTGAGAAGTCTGCATCGGTCAACGCG
AACAACGCTGCTACGTTGGTGGCGTGGGCGTGTTTCGAGGCGGTTCAAAG
CAACTTTGACATGGCCATTCACACGTTTGAGAAGGCGCACAAGGTGTCCC
CGAGAAACGTCCGCGCATATGTTGCGCACGCATCGGTTCTGGAACGTGCC
GGCTACAGAAATCGCGCTAGAAACATGCTGGTTCGTGCAATGCGACAACG
ACCAAACGAGGCCGGCCCGCGCCAAATGATGGGCATTCTCGAGTATCGTG
ATGGTCGTGCCCAAGTAGCGCGTGAAATGTTCGAGAGTGCGTTGGCTGTT
GACCGGTCGCACACGCCCAGCTGGCATGCTTGGGCGTGTGTGGAACTGAA
TTGTGGCAACATTGAGCGCGCAAGGGACTTGTTTCAACATGCCATCTGGG
CACATCCGCAGTCTTCACATGCCGTGCGAACGTGGCACGCATGGGCAAGC
CTGGAAATGCAACAGAAACAGTTTGGGGCCGCGAGAAGATACTTTGCGCA
CGCGATGGAAATTGACGCCAACAACGTGGCAATTCTTACTGGGATGGCTA
GACTTGATGCCATGACAGGCGACATTGTGAGGGCTAGACAGCTGTTGGAG
AAAAGTATTCGACTCAAGCCGTACATGAAGTCGACATGGAAGCTGTATGA
GGACTTGGAATTGGCTTATGGCTCTGTGCATCGCGCAAGGATGGTTTATG
AACGTTGCGTGCTGTATATGAGACAGGTTGATCAACGTTTGGTGGTGTCA
GATGCGTTGCCAGGTGACTTTCGTGCCGGGGGAATGTGGATTGATGCGCT
TGAGCTTAGCCCGAATGAAAGCGCTTTTGATAAAATTGATGAGAAGGACT
GA
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