Gchil6963.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6963.t1
Unique Name	Gchil6963.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004398_pilon	contig	tig00004398_pilon:438697..439434 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1227349.C170_02169
PFAMs	NPP1
Max annot lvl	91061\|Bacilli
Evalue	8.15e-28
EggNOG OGs	COG0477@1\|root,COG2814@2\|Bacteria,1VTXD@1239\|Firmicutes,4HTZ6@91061\|Bacilli
Description	Necrosis inducing protein (NPP1)
COG category	EGP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6963	Gchil6963	Gracilaria chilensis NLEC103_M9 male	gene	tig00004398_pilon 438697..439434 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6963.t1.start1	Gchil6963.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004398_pilon 438697..438699 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6963.t1.CDS1	Gchil6963.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004398_pilon 438697..439434 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6963.t1.exon1	Gchil6963.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004398_pilon 438697..439434 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6963.t1.stop1	Gchil6963.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004398_pilon 439432..439434 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6963.t1	Gchil6963.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004398_pilon 438697..439434 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004398_pilon:438697..439434+
coding sequence from alignment at tig00004398_pilon:438697..439434+

mRNA sequence

>Gchil6963.t1 ID=Gchil6963.t1|Name=Gchil6963.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MKAPILHLGIFLFSSLAFSQTINYVPHKDLKPIYSKLGGVYEAYRWYQPA
IKVLNGCVPFPAVGKYTASRGLKIGGARNGLCSKNTGQVYARHKNYKEKK
VHGIMYAYYFPKDQVFAGGASPGHRHDWEEAIIWVNWDWTRPLGASMSGH
GDYTHSSRNWCGSHKKVLYANGNTINGISHEFRDSGGDGCSHNHPIANWY
QLSKEVRYTLNKARWLDQKGKQRATPKINDDNFGSKMDKAFREFF*

spliced messenger RNA

>Gchil6963.t1 ID=Gchil6963.t1|Name=Gchil6963.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004398_pilon:438697..439434+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCACCAATTCTCCATCTTGGAATATTTCTGTTCTCATCACTTGC
ATTCAGCCAAACTATCAACTATGTTCCGCACAAGGATCTCAAACCTATTT
ATTCCAAACTAGGCGGAGTCTACGAGGCTTACCGGTGGTATCAACCAGCC
ATCAAAGTTCTTAATGGCTGTGTGCCTTTTCCAGCTGTTGGCAAGTACAC
TGCGAGCAGAGGTTTAAAAATTGGCGGTGCCCGCAATGGTCTTTGCAGCA
AGAACACAGGTCAGGTATATGCTCGTCACAAGAACTACAAGGAGAAGAAG
GTACACGGCATTATGTACGCATACTACTTCCCAAAGGATCAGGTGTTTGC
TGGTGGGGCTTCTCCGGGGCATCGTCATGACTGGGAGGAAGCAATCATTT
GGGTGAACTGGGACTGGACCCGTCCTCTCGGGGCTTCTATGTCAGGACAT
GGTGACTACACACATAGCTCAAGAAACTGGTGCGGCTCGCATAAAAAAGT
GCTGTATGCCAACGGAAACACGATAAATGGAATATCTCATGAGTTCAGAG
ATAGTGGTGGAGATGGATGCTCACATAATCACCCGATTGCCAATTGGTAT
CAGCTGAGCAAGGAAGTGCGATATACGCTCAATAAGGCTCGATGGTTGGA
TCAGAAAGGAAAACAACGTGCCACGCCAAAGATCAATGACGATAACTTCG
GCTCTAAAATGGACAAGGCGTTCAGAGAATTCTTCTAA

protein sequence of Gchil6963.t1

>Gchil6963.t1 ID=Gchil6963.t1|Name=Gchil6963.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MKAPILHLGIFLFSSLAFSQTINYVPHKDLKPIYSKLGGVYEAYRWYQPA
IKVLNGCVPFPAVGKYTASRGLKIGGARNGLCSKNTGQVYARHKNYKEKK
VHGIMYAYYFPKDQVFAGGASPGHRHDWEEAIIWVNWDWTRPLGASMSGH
GDYTHSSRNWCGSHKKVLYANGNTINGISHEFRDSGGDGCSHNHPIANWY
QLSKEVRYTLNKARWLDQKGKQRATPKINDDNFGSKMDKAFREFF*

mRNA from alignment at tig00004398_pilon:438697..439434+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6963.t1 ID=Gchil6963.t1|Name=Gchil6963.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004398_pilon:438697..439434+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCACCAATTCTCCATCTTGGAATATTTCTGTTCTCATCACTTGC
ATTCAGCCAAACTATCAACTATGTTCCGCACAAGGATCTCAAACCTATTT
ATTCCAAACTAGGCGGAGTCTACGAGGCTTACCGGTGGTATCAACCAGCC
ATCAAAGTTCTTAATGGCTGTGTGCCTTTTCCAGCTGTTGGCAAGTACAC
TGCGAGCAGAGGTTTAAAAATTGGCGGTGCCCGCAATGGTCTTTGCAGCA
AGAACACAGGTCAGGTATATGCTCGTCACAAGAACTACAAGGAGAAGAAG
GTACACGGCATTATGTACGCATACTACTTCCCAAAGGATCAGGTGTTTGC
TGGTGGGGCTTCTCCGGGGCATCGTCATGACTGGGAGGAAGCAATCATTT
GGGTGAACTGGGACTGGACCCGTCCTCTCGGGGCTTCTATGTCAGGACAT
GGTGACTACACACATAGCTCAAGAAACTGGTGCGGCTCGCATAAAAAAGT
GCTGTATGCCAACGGAAACACGATAAATGGAATATCTCATGAGTTCAGAG
ATAGTGGTGGAGATGGATGCTCACATAATCACCCGATTGCCAATTGGTAT
CAGCTGAGCAAGGAAGTGCGATATACGCTCAATAAGGCTCGATGGTTGGA
TCAGAAAGGAAAACAACGTGCCACGCCAAAGATCAATGACGATAACTTCG
GCTCTAAAATGGACAAGGCGTTCAGAGAATTCTTCTAA

Coding sequence (CDS) from alignment at tig00004398_pilon:438697..439434+

>Gchil6963.t1 ID=Gchil6963.t1|Name=Gchil6963.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00004398_pilon:438697..439434+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCACCAATTCTCCATCTTGGAATATTTCTGTTCTCATCACTTGC
ATTCAGCCAAACTATCAACTATGTTCCGCACAAGGATCTCAAACCTATTT
ATTCCAAACTAGGCGGAGTCTACGAGGCTTACCGGTGGTATCAACCAGCC
ATCAAAGTTCTTAATGGCTGTGTGCCTTTTCCAGCTGTTGGCAAGTACAC
TGCGAGCAGAGGTTTAAAAATTGGCGGTGCCCGCAATGGTCTTTGCAGCA
AGAACACAGGTCAGGTATATGCTCGTCACAAGAACTACAAGGAGAAGAAG
GTACACGGCATTATGTACGCATACTACTTCCCAAAGGATCAGGTGTTTGC
TGGTGGGGCTTCTCCGGGGCATCGTCATGACTGGGAGGAAGCAATCATTT
GGGTGAACTGGGACTGGACCCGTCCTCTCGGGGCTTCTATGTCAGGACAT
GGTGACTACACACATAGCTCAAGAAACTGGTGCGGCTCGCATAAAAAAGT
GCTGTATGCCAACGGAAACACGATAAATGGAATATCTCATGAGTTCAGAG
ATAGTGGTGGAGATGGATGCTCACATAATCACCCGATTGCCAATTGGTAT
CAGCTGAGCAAGGAAGTGCGATATACGCTCAATAAGGCTCGATGGTTGGA
TCAGAAAGGAAAACAACGTGCCACGCCAAAGATCAATGACGATAACTTCG
GCTCTAAAATGGACAAGGCGTTCAGAGAATTCTTCTAA