Gchil6962.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6962.t1
Unique NameGchil6962.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:396954..397922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6962Gchil6962Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 396954..397922 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6962.t1.start1Gchil6962.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 396954..396956 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6962.t1.CDS1Gchil6962.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 396954..397922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6962.t1.exon1Gchil6962.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 396954..397922 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6962.t1.stop1Gchil6962.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 397920..397922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6962.t1Gchil6962.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 396954..397922 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6962.t1 ID=Gchil6962.t1|Name=Gchil6962.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=323bp
MMKNVKILKRPTSTPPQTPSVRVERELTQLLESALQRERARLEASYRQRQ
DMLLRAVSDVLNNTLERVVTAAARREIETLMQAFLSLQESAPKPVVSEEE
VALAKQHFISAFERTALPQFERSIATMLTSLSKNVEQVLDDKLLSPCASV
VTSLEGTADKIRSAKSVVADMSLDEESADLAAVQAALDAGKIKEALTLCT
GKSIKVKAKAVSGVLDSSVRAEDAMAGAVPPMVDLINFAAVLSMDLTDRT
EARLAWLYEIISLMDDTESGNEADMESIRRKLVGTIERLSEFQKNGTPAP
AEAKHAKLLIRVLKAHLNGMST*
back to top

spliced messenger RNA

>Gchil6962.t1 ID=Gchil6962.t1|Name=Gchil6962.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00004398_pilon:396954..397922+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAAGAACGTCAAGATCCTCAAGAGGCCGACCTCAACTCCGCCGCA
AACGCCGTCAGTTCGCGTTGAACGCGAACTCACCCAACTGCTCGAAAGCG
CGCTGCAGCGGGAACGCGCACGACTAGAAGCTTCGTACCGACAGCGACAA
GACATGCTTCTCCGTGCCGTTTCTGACGTACTCAATAACACATTGGAAAG
AGTGGTCACCGCCGCCGCACGGAGAGAAATCGAGACACTCATGCAGGCCT
TCCTAAGTCTTCAGGAATCCGCCCCAAAGCCTGTTGTCTCTGAGGAAGAA
GTGGCACTCGCTAAGCAACATTTCATCTCTGCGTTTGAGCGAACCGCTCT
CCCGCAGTTTGAACGCTCTATTGCTACCATGCTCACGTCGCTATCCAAGA
ATGTCGAACAAGTGCTTGACGACAAGCTATTGTCCCCCTGCGCGTCCGTG
GTCACCTCGTTGGAGGGAACTGCTGACAAAATTCGGAGTGCAAAAAGCGT
CGTTGCCGACATGTCCCTGGACGAAGAATCCGCCGATCTCGCTGCCGTAC
AAGCCGCTCTCGACGCCGGTAAAATCAAGGAGGCTCTGACGTTATGCACC
GGAAAGTCCATCAAAGTGAAGGCAAAGGCGGTGAGTGGTGTCTTGGACTC
TTCTGTAAGGGCTGAGGACGCGATGGCTGGTGCAGTGCCGCCCATGGTCG
ATCTTATCAACTTCGCGGCCGTGTTGAGCATGGACCTGACAGACCGCACT
GAGGCTAGATTAGCCTGGCTTTACGAAATTATTTCGTTAATGGATGATAC
GGAAAGTGGAAACGAGGCCGATATGGAGAGCATTAGGCGAAAGTTGGTCG
GAACCATTGAGAGGTTGTCTGAGTTTCAGAAGAATGGAACTCCAGCCCCA
GCGGAAGCTAAGCATGCCAAGCTTTTGATTAGAGTTCTGAAGGCACATTT
GAACGGCATGTCAACATAG
back to top

protein sequence of Gchil6962.t1

>Gchil6962.t1 ID=Gchil6962.t1|Name=Gchil6962.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=323bp
MMKNVKILKRPTSTPPQTPSVRVERELTQLLESALQRERARLEASYRQRQ
DMLLRAVSDVLNNTLERVVTAAARREIETLMQAFLSLQESAPKPVVSEEE
VALAKQHFISAFERTALPQFERSIATMLTSLSKNVEQVLDDKLLSPCASV
VTSLEGTADKIRSAKSVVADMSLDEESADLAAVQAALDAGKIKEALTLCT
GKSIKVKAKAVSGVLDSSVRAEDAMAGAVPPMVDLINFAAVLSMDLTDRT
EARLAWLYEIISLMDDTESGNEADMESIRRKLVGTIERLSEFQKNGTPAP
AEAKHAKLLIRVLKAHLNGMST*
back to top

mRNA from alignment at tig00004398_pilon:396954..397922+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6962.t1 ID=Gchil6962.t1|Name=Gchil6962.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00004398_pilon:396954..397922+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGAAGAACGTCAAGATCCTCAAGAGGCCGACCTCAACTCCGCCGCA
AACGCCGTCAGTTCGCGTTGAACGCGAACTCACCCAACTGCTCGAAAGCG
CGCTGCAGCGGGAACGCGCACGACTAGAAGCTTCGTACCGACAGCGACAA
GACATGCTTCTCCGTGCCGTTTCTGACGTACTCAATAACACATTGGAAAG
AGTGGTCACCGCCGCCGCACGGAGAGAAATCGAGACACTCATGCAGGCCT
TCCTAAGTCTTCAGGAATCCGCCCCAAAGCCTGTTGTCTCTGAGGAAGAA
GTGGCACTCGCTAAGCAACATTTCATCTCTGCGTTTGAGCGAACCGCTCT
CCCGCAGTTTGAACGCTCTATTGCTACCATGCTCACGTCGCTATCCAAGA
ATGTCGAACAAGTGCTTGACGACAAGCTATTGTCCCCCTGCGCGTCCGTG
GTCACCTCGTTGGAGGGAACTGCTGACAAAATTCGGAGTGCAAAAAGCGT
CGTTGCCGACATGTCCCTGGACGAAGAATCCGCCGATCTCGCTGCCGTAC
AAGCCGCTCTCGACGCCGGTAAAATCAAGGAGGCTCTGACGTTATGCACC
GGAAAGTCCATCAAAGTGAAGGCAAAGGCGGTGAGTGGTGTCTTGGACTC
TTCTGTAAGGGCTGAGGACGCGATGGCTGGTGCAGTGCCGCCCATGGTCG
ATCTTATCAACTTCGCGGCCGTGTTGAGCATGGACCTGACAGACCGCACT
GAGGCTAGATTAGCCTGGCTTTACGAAATTATTTCGTTAATGGATGATAC
GGAAAGTGGAAACGAGGCCGATATGGAGAGCATTAGGCGAAAGTTGGTCG
GAACCATTGAGAGGTTGTCTGAGTTTCAGAAGAATGGAACTCCAGCCCCA
GCGGAAGCTAAGCATGCCAAGCTTTTGATTAGAGTTCTGAAGGCACATTT
GAACGGCATGTCAACATAG
back to top

Coding sequence (CDS) from alignment at tig00004398_pilon:396954..397922+

>Gchil6962.t1 ID=Gchil6962.t1|Name=Gchil6962.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00004398_pilon:396954..397922+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGAAGAACGTCAAGATCCTCAAGAGGCCGACCTCAACTCCGCCGCA
AACGCCGTCAGTTCGCGTTGAACGCGAACTCACCCAACTGCTCGAAAGCG
CGCTGCAGCGGGAACGCGCACGACTAGAAGCTTCGTACCGACAGCGACAA
GACATGCTTCTCCGTGCCGTTTCTGACGTACTCAATAACACATTGGAAAG
AGTGGTCACCGCCGCCGCACGGAGAGAAATCGAGACACTCATGCAGGCCT
TCCTAAGTCTTCAGGAATCCGCCCCAAAGCCTGTTGTCTCTGAGGAAGAA
GTGGCACTCGCTAAGCAACATTTCATCTCTGCGTTTGAGCGAACCGCTCT
CCCGCAGTTTGAACGCTCTATTGCTACCATGCTCACGTCGCTATCCAAGA
ATGTCGAACAAGTGCTTGACGACAAGCTATTGTCCCCCTGCGCGTCCGTG
GTCACCTCGTTGGAGGGAACTGCTGACAAAATTCGGAGTGCAAAAAGCGT
CGTTGCCGACATGTCCCTGGACGAAGAATCCGCCGATCTCGCTGCCGTAC
AAGCCGCTCTCGACGCCGGTAAAATCAAGGAGGCTCTGACGTTATGCACC
GGAAAGTCCATCAAAGTGAAGGCAAAGGCGGTGAGTGGTGTCTTGGACTC
TTCTGTAAGGGCTGAGGACGCGATGGCTGGTGCAGTGCCGCCCATGGTCG
ATCTTATCAACTTCGCGGCCGTGTTGAGCATGGACCTGACAGACCGCACT
GAGGCTAGATTAGCCTGGCTTTACGAAATTATTTCGTTAATGGATGATAC
GGAAAGTGGAAACGAGGCCGATATGGAGAGCATTAGGCGAAAGTTGGTCG
GAACCATTGAGAGGTTGTCTGAGTTTCAGAAGAATGGAACTCCAGCCCCA
GCGGAAGCTAAGCATGCCAAGCTTTTGATTAGAGTTCTGAAGGCACATTT
GAACGGCATGTCAACATAG
back to top