Gchil6953.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6953.t1
Unique Name	Gchil6953.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	503

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004398_pilon	contig	tig00004398_pilon:285843..287351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6953	Gchil6953	Gracilaria chilensis NLEC103_M9 male	gene	tig00004398_pilon 285843..287351 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6953.t1.start1	Gchil6953.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004398_pilon 285843..285845 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6953.t1.CDS1	Gchil6953.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004398_pilon 285843..287351 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6953.t1.exon1	Gchil6953.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004398_pilon 285843..287351 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6953.t1.stop1	Gchil6953.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004398_pilon 287349..287351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6953.t1	Gchil6953.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004398_pilon 285843..287351 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004398_pilon:285843..287351+
coding sequence from alignment at tig00004398_pilon:285843..287351+

mRNA sequence

>Gchil6953.t1 ID=Gchil6953.t1|Name=Gchil6953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=503bp
MPILHRFPLLLVTILFNLHCSDALPLPGEHPIPGIHPVLQPIASEPRQSH
AIPTSIVRGFLLAIIIPVLCRFITDCLDNLSSRFPAWVSLLYFKIFFLIG
TYIISVIAGLTVFIYSVIVSSFEFGCTGIGILLGIYSGNYLSLTSSSSLR
KIWRCKPRFKTLSEAGKRLLPHALKLLIRLAMSPHFSNHLPFNMRLDLVI
FYLEQLPDVHLLEAFLNADTSIPLRTCLSLQELHRQIPRFMQLQLAAWPL
LPDAFRSLVKGAFEQDYSNTLPFTSRIKLVAYCVELNDRDLLEVFLHREL
GNSSTFSLKLEQLLGRLPDPSLLPGTGRKRLPHALKNLLQLASNETSSIG
IPFHVQVELVMLYLKLSEPHSNEITLPDWIRNYNPTQNGAAVVPNCAEFH
WILEWARRFQETLSAYPLPRREVSPGDVKDAVNICSTLPLPTSIPEQHED
HVIRLVTAVYARIKSLGSTHPRLYSWFMQQECAGVDVCVRSWFPPRIVSD
EN*

spliced messenger RNA

>Gchil6953.t1 ID=Gchil6953.t1|Name=Gchil6953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004398_pilon:285843..287351+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTATTCTTCATCGCTTTCCCCTTCTCCTCGTCACGATCCTTTTTAA
CTTGCATTGCTCCGATGCTTTGCCGCTGCCTGGTGAACACCCGATACCTG
GTATACACCCAGTTCTTCAGCCTATTGCTTCTGAGCCACGGCAGTCTCAT
GCCATCCCAACATCCATAGTCAGGGGCTTTCTCCTTGCTATCATAATTCC
CGTATTGTGCCGCTTCATCACCGACTGCCTAGATAACCTTTCCAGTCGCT
TCCCAGCATGGGTTTCTCTCTTGTACTTCAAAATTTTCTTTCTCATTGGC
ACCTATATTATTTCTGTAATCGCCGGCTTGACTGTCTTCATCTACAGCGT
CATCGTGTCTTCCTTTGAATTTGGCTGCACTGGCATTGGTATTCTTCTTG
GTATTTACTCCGGCAACTACCTATCCTTAACTTCTTCTTCTAGTCTCCGT
AAGATTTGGCGTTGCAAACCACGTTTTAAAACCCTATCAGAAGCGGGTAA
ACGTCTACTACCCCATGCACTCAAACTTCTTATACGCCTTGCCATGAGCC
CGCACTTTTCGAACCACCTCCCATTCAACATGCGCCTCGATCTGGTAATC
TTCTATTTGGAACAACTGCCCGATGTACACTTGTTGGAAGCTTTTTTGAA
TGCCGATACTTCCATTCCTCTCCGCACCTGTCTCAGCCTTCAAGAGCTGC
ACCGCCAGATCCCGCGTTTTATGCAACTGCAACTTGCAGCTTGGCCTCTT
CTCCCCGATGCCTTCCGTTCTCTGGTAAAAGGGGCTTTCGAACAAGATTA
TTCGAACACTCTCCCGTTTACTTCGCGCATCAAGCTGGTAGCATACTGCG
TGGAACTGAATGATAGGGACCTTTTGGAAGTGTTTCTGCATCGTGAGCTT
GGAAATTCTTCCACATTTTCTTTAAAGCTCGAACAGCTTCTCGGTCGTCT
TCCAGATCCTTCACTTCTTCCCGGTACCGGCCGAAAACGACTACCCCATG
CCTTGAAAAACCTCTTGCAACTTGCGTCCAACGAAACCTCTTCGATCGGT
ATTCCGTTTCACGTCCAAGTTGAGCTGGTAATGTTGTACTTGAAGTTGAG
CGAGCCGCATTCGAATGAAATCACCCTTCCGGATTGGATCCGGAACTATA
ATCCGACCCAGAATGGAGCTGCGGTGGTTCCCAATTGCGCAGAGTTTCAT
TGGATTCTAGAATGGGCTCGCCGATTCCAAGAGACGCTGTCCGCTTACCC
TTTACCGCGGCGTGAAGTATCGCCCGGAGATGTCAAGGATGCTGTGAACA
TTTGTTCTACCCTTCCATTGCCTACAAGCATCCCTGAGCAACACGAAGAT
CATGTGATTCGATTGGTGACAGCCGTTTATGCCCGCATCAAATCTCTTGG
ATCTACCCATCCACGTTTGTACTCATGGTTCATGCAGCAGGAATGCGCGG
GTGTTGATGTATGTGTGCGATCTTGGTTTCCGCCCCGTATCGTCTCGGAT
GAGAATTAG

protein sequence of Gchil6953.t1

>Gchil6953.t1 ID=Gchil6953.t1|Name=Gchil6953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=503bp
MPILHRFPLLLVTILFNLHCSDALPLPGEHPIPGIHPVLQPIASEPRQSH
AIPTSIVRGFLLAIIIPVLCRFITDCLDNLSSRFPAWVSLLYFKIFFLIG
TYIISVIAGLTVFIYSVIVSSFEFGCTGIGILLGIYSGNYLSLTSSSSLR
KIWRCKPRFKTLSEAGKRLLPHALKLLIRLAMSPHFSNHLPFNMRLDLVI
FYLEQLPDVHLLEAFLNADTSIPLRTCLSLQELHRQIPRFMQLQLAAWPL
LPDAFRSLVKGAFEQDYSNTLPFTSRIKLVAYCVELNDRDLLEVFLHREL
GNSSTFSLKLEQLLGRLPDPSLLPGTGRKRLPHALKNLLQLASNETSSIG
IPFHVQVELVMLYLKLSEPHSNEITLPDWIRNYNPTQNGAAVVPNCAEFH
WILEWARRFQETLSAYPLPRREVSPGDVKDAVNICSTLPLPTSIPEQHED
HVIRLVTAVYARIKSLGSTHPRLYSWFMQQECAGVDVCVRSWFPPRIVSD
EN*

mRNA from alignment at tig00004398_pilon:285843..287351+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6953.t1 ID=Gchil6953.t1|Name=Gchil6953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00004398_pilon:285843..287351+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTATTCTTCATCGCTTTCCCCTTCTCCTCGTCACGATCCTTTTTAA
CTTGCATTGCTCCGATGCTTTGCCGCTGCCTGGTGAACACCCGATACCTG
GTATACACCCAGTTCTTCAGCCTATTGCTTCTGAGCCACGGCAGTCTCAT
GCCATCCCAACATCCATAGTCAGGGGCTTTCTCCTTGCTATCATAATTCC
CGTATTGTGCCGCTTCATCACCGACTGCCTAGATAACCTTTCCAGTCGCT
TCCCAGCATGGGTTTCTCTCTTGTACTTCAAAATTTTCTTTCTCATTGGC
ACCTATATTATTTCTGTAATCGCCGGCTTGACTGTCTTCATCTACAGCGT
CATCGTGTCTTCCTTTGAATTTGGCTGCACTGGCATTGGTATTCTTCTTG
GTATTTACTCCGGCAACTACCTATCCTTAACTTCTTCTTCTAGTCTCCGT
AAGATTTGGCGTTGCAAACCACGTTTTAAAACCCTATCAGAAGCGGGTAA
ACGTCTACTACCCCATGCACTCAAACTTCTTATACGCCTTGCCATGAGCC
CGCACTTTTCGAACCACCTCCCATTCAACATGCGCCTCGATCTGGTAATC
TTCTATTTGGAACAACTGCCCGATGTACACTTGTTGGAAGCTTTTTTGAA
TGCCGATACTTCCATTCCTCTCCGCACCTGTCTCAGCCTTCAAGAGCTGC
ACCGCCAGATCCCGCGTTTTATGCAACTGCAACTTGCAGCTTGGCCTCTT
CTCCCCGATGCCTTCCGTTCTCTGGTAAAAGGGGCTTTCGAACAAGATTA
TTCGAACACTCTCCCGTTTACTTCGCGCATCAAGCTGGTAGCATACTGCG
TGGAACTGAATGATAGGGACCTTTTGGAAGTGTTTCTGCATCGTGAGCTT
GGAAATTCTTCCACATTTTCTTTAAAGCTCGAACAGCTTCTCGGTCGTCT
TCCAGATCCTTCACTTCTTCCCGGTACCGGCCGAAAACGACTACCCCATG
CCTTGAAAAACCTCTTGCAACTTGCGTCCAACGAAACCTCTTCGATCGGT
ATTCCGTTTCACGTCCAAGTTGAGCTGGTAATGTTGTACTTGAAGTTGAG
CGAGCCGCATTCGAATGAAATCACCCTTCCGGATTGGATCCGGAACTATA
ATCCGACCCAGAATGGAGCTGCGGTGGTTCCCAATTGCGCAGAGTTTCAT
TGGATTCTAGAATGGGCTCGCCGATTCCAAGAGACGCTGTCCGCTTACCC
TTTACCGCGGCGTGAAGTATCGCCCGGAGATGTCAAGGATGCTGTGAACA
TTTGTTCTACCCTTCCATTGCCTACAAGCATCCCTGAGCAACACGAAGAT
CATGTGATTCGATTGGTGACAGCCGTTTATGCCCGCATCAAATCTCTTGG
ATCTACCCATCCACGTTTGTACTCATGGTTCATGCAGCAGGAATGCGCGG
GTGTTGATGTATGTGTGCGATCTTGGTTTCCGCCCCGTATCGTCTCGGAT
GAGAATTAG

Coding sequence (CDS) from alignment at tig00004398_pilon:285843..287351+

>Gchil6953.t1 ID=Gchil6953.t1|Name=Gchil6953.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00004398_pilon:285843..287351+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTATTCTTCATCGCTTTCCCCTTCTCCTCGTCACGATCCTTTTTAA
CTTGCATTGCTCCGATGCTTTGCCGCTGCCTGGTGAACACCCGATACCTG
GTATACACCCAGTTCTTCAGCCTATTGCTTCTGAGCCACGGCAGTCTCAT
GCCATCCCAACATCCATAGTCAGGGGCTTTCTCCTTGCTATCATAATTCC
CGTATTGTGCCGCTTCATCACCGACTGCCTAGATAACCTTTCCAGTCGCT
TCCCAGCATGGGTTTCTCTCTTGTACTTCAAAATTTTCTTTCTCATTGGC
ACCTATATTATTTCTGTAATCGCCGGCTTGACTGTCTTCATCTACAGCGT
CATCGTGTCTTCCTTTGAATTTGGCTGCACTGGCATTGGTATTCTTCTTG
GTATTTACTCCGGCAACTACCTATCCTTAACTTCTTCTTCTAGTCTCCGT
AAGATTTGGCGTTGCAAACCACGTTTTAAAACCCTATCAGAAGCGGGTAA
ACGTCTACTACCCCATGCACTCAAACTTCTTATACGCCTTGCCATGAGCC
CGCACTTTTCGAACCACCTCCCATTCAACATGCGCCTCGATCTGGTAATC
TTCTATTTGGAACAACTGCCCGATGTACACTTGTTGGAAGCTTTTTTGAA
TGCCGATACTTCCATTCCTCTCCGCACCTGTCTCAGCCTTCAAGAGCTGC
ACCGCCAGATCCCGCGTTTTATGCAACTGCAACTTGCAGCTTGGCCTCTT
CTCCCCGATGCCTTCCGTTCTCTGGTAAAAGGGGCTTTCGAACAAGATTA
TTCGAACACTCTCCCGTTTACTTCGCGCATCAAGCTGGTAGCATACTGCG
TGGAACTGAATGATAGGGACCTTTTGGAAGTGTTTCTGCATCGTGAGCTT
GGAAATTCTTCCACATTTTCTTTAAAGCTCGAACAGCTTCTCGGTCGTCT
TCCAGATCCTTCACTTCTTCCCGGTACCGGCCGAAAACGACTACCCCATG
CCTTGAAAAACCTCTTGCAACTTGCGTCCAACGAAACCTCTTCGATCGGT
ATTCCGTTTCACGTCCAAGTTGAGCTGGTAATGTTGTACTTGAAGTTGAG
CGAGCCGCATTCGAATGAAATCACCCTTCCGGATTGGATCCGGAACTATA
ATCCGACCCAGAATGGAGCTGCGGTGGTTCCCAATTGCGCAGAGTTTCAT
TGGATTCTAGAATGGGCTCGCCGATTCCAAGAGACGCTGTCCGCTTACCC
TTTACCGCGGCGTGAAGTATCGCCCGGAGATGTCAAGGATGCTGTGAACA
TTTGTTCTACCCTTCCATTGCCTACAAGCATCCCTGAGCAACACGAAGAT
CATGTGATTCGATTGGTGACAGCCGTTTATGCCCGCATCAAATCTCTTGG
ATCTACCCATCCACGTTTGTACTCATGGTTCATGCAGCAGGAATGCGCGG
GTGTTGATGTATGTGTGCGATCTTGGTTTCCGCCCCGTATCGTCTCGGAT
GAGAATTAG