Gchil6946.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6946.t1
Unique NameGchil6946.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:217626..218498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008788540.1
PFAMsBrix
Max annot lvl35493|Streptophyta
KEGG koko:K14561
KEGG Pathwayko03008,map03008
Evalue3.09e-109
EggNOG OGsCOG2136@1|root,KOG2781@2759|Eukaryota,37N3X@33090|Viridiplantae,3GBRS@35493|Streptophyta,3KRGT@4447|Liliopsida
DescriptionBrix domain
COG categoryA
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6946Gchil6946Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 217626..218498 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6946.t1.start1Gchil6946.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 217626..217628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6946.t1.CDS1Gchil6946.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 217626..218498 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6946.t1.exon1Gchil6946.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 217626..218498 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6946.t1.stop1Gchil6946.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 218496..218498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6946.t1Gchil6946.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 217626..218498 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6946.t1 ID=Gchil6946.t1|Name=Gchil6946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=291bp
MLRRDARLRREYLFRKALDGRRAADFDRRLAVRAALATGTPLPTQLRRAA
PALQVADALHDALHDAPRTHIDDEYATAADHAPRVLVTTSRAPSARLSQF
AKELRLLLPGATRLNRGNLVVSQLVASCRANAFSDLIIAHEHRGQPDGLI
VSHLPYGPTAFFNISNCVMRHDVHERLPNMSEALPHLLFHNFNTDLGARV
VTVLKHLFPPPKQTSRRVITFANFDDTISMRHHTFVPAHSAEHVQLTEAG
PRFELQLYQLRLGTVDNGEADNEWVLRPHMNTAKRRRALG*
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spliced messenger RNA

>Gchil6946.t1 ID=Gchil6946.t1|Name=Gchil6946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004398_pilon:217626..218498+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGACGCGACGCGCGGCTGCGGCGCGAGTACCTTTTCCGCAAGGC
GCTGGACGGCCGCCGCGCCGCCGACTTCGACCGCCGTCTGGCCGTGCGCG
CCGCGCTGGCCACAGGCACCCCGCTGCCCACGCAGCTGCGCCGTGCCGCG
CCAGCGCTTCAAGTCGCCGACGCGCTGCACGATGCGCTACACGACGCCCC
ACGCACGCACATCGACGACGAGTACGCCACCGCTGCGGACCATGCGCCGC
GCGTGCTCGTCACCACCAGTCGTGCCCCTTCTGCGCGTCTCTCCCAGTTT
GCAAAGGAGCTTCGTTTGTTACTGCCCGGCGCCACTCGCCTCAACCGCGG
AAACCTCGTTGTGTCGCAGCTTGTTGCTTCGTGTCGTGCCAATGCCTTTT
CCGATCTCATCATTGCGCACGAACACCGTGGCCAGCCTGATGGCCTTATT
GTGTCGCATTTACCGTACGGACCCACGGCCTTCTTCAACATTTCCAACTG
TGTCATGCGACACGACGTGCATGAACGCCTGCCAAACATGTCCGAAGCGT
TGCCGCATCTGCTGTTTCATAACTTCAACACCGATCTGGGTGCGCGCGTC
GTCACCGTGCTCAAGCATCTGTTCCCACCGCCCAAGCAAACATCGCGTCG
CGTCATCACGTTTGCCAACTTTGACGACACCATCTCCATGCGTCACCACA
CGTTTGTGCCAGCGCATTCCGCCGAGCATGTGCAGCTCACCGAGGCCGGG
CCGCGCTTCGAGCTGCAGCTGTACCAGTTACGATTGGGCACCGTCGACAA
CGGCGAGGCAGACAACGAATGGGTGCTACGTCCGCACATGAACACCGCCA
AGCGCCGCCGCGCCCTCGGCTAG
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protein sequence of Gchil6946.t1

>Gchil6946.t1 ID=Gchil6946.t1|Name=Gchil6946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=291bp
MLRRDARLRREYLFRKALDGRRAADFDRRLAVRAALATGTPLPTQLRRAA
PALQVADALHDALHDAPRTHIDDEYATAADHAPRVLVTTSRAPSARLSQF
AKELRLLLPGATRLNRGNLVVSQLVASCRANAFSDLIIAHEHRGQPDGLI
VSHLPYGPTAFFNISNCVMRHDVHERLPNMSEALPHLLFHNFNTDLGARV
VTVLKHLFPPPKQTSRRVITFANFDDTISMRHHTFVPAHSAEHVQLTEAG
PRFELQLYQLRLGTVDNGEADNEWVLRPHMNTAKRRRALG*
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mRNA from alignment at tig00004398_pilon:217626..218498+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6946.t1 ID=Gchil6946.t1|Name=Gchil6946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00004398_pilon:217626..218498+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCGACGCGACGCGCGGCTGCGGCGCGAGTACCTTTTCCGCAAGGC
GCTGGACGGCCGCCGCGCCGCCGACTTCGACCGCCGTCTGGCCGTGCGCG
CCGCGCTGGCCACAGGCACCCCGCTGCCCACGCAGCTGCGCCGTGCCGCG
CCAGCGCTTCAAGTCGCCGACGCGCTGCACGATGCGCTACACGACGCCCC
ACGCACGCACATCGACGACGAGTACGCCACCGCTGCGGACCATGCGCCGC
GCGTGCTCGTCACCACCAGTCGTGCCCCTTCTGCGCGTCTCTCCCAGTTT
GCAAAGGAGCTTCGTTTGTTACTGCCCGGCGCCACTCGCCTCAACCGCGG
AAACCTCGTTGTGTCGCAGCTTGTTGCTTCGTGTCGTGCCAATGCCTTTT
CCGATCTCATCATTGCGCACGAACACCGTGGCCAGCCTGATGGCCTTATT
GTGTCGCATTTACCGTACGGACCCACGGCCTTCTTCAACATTTCCAACTG
TGTCATGCGACACGACGTGCATGAACGCCTGCCAAACATGTCCGAAGCGT
TGCCGCATCTGCTGTTTCATAACTTCAACACCGATCTGGGTGCGCGCGTC
GTCACCGTGCTCAAGCATCTGTTCCCACCGCCCAAGCAAACATCGCGTCG
CGTCATCACGTTTGCCAACTTTGACGACACCATCTCCATGCGTCACCACA
CGTTTGTGCCAGCGCATTCCGCCGAGCATGTGCAGCTCACCGAGGCCGGG
CCGCGCTTCGAGCTGCAGCTGTACCAGTTACGATTGGGCACCGTCGACAA
CGGCGAGGCAGACAACGAATGGGTGCTACGTCCGCACATGAACACCGCCA
AGCGCCGCCGCGCCCTCGGCTAG
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Coding sequence (CDS) from alignment at tig00004398_pilon:217626..218498+

>Gchil6946.t1 ID=Gchil6946.t1|Name=Gchil6946.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00004398_pilon:217626..218498+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCGACGCGACGCGCGGCTGCGGCGCGAGTACCTTTTCCGCAAGGC
GCTGGACGGCCGCCGCGCCGCCGACTTCGACCGCCGTCTGGCCGTGCGCG
CCGCGCTGGCCACAGGCACCCCGCTGCCCACGCAGCTGCGCCGTGCCGCG
CCAGCGCTTCAAGTCGCCGACGCGCTGCACGATGCGCTACACGACGCCCC
ACGCACGCACATCGACGACGAGTACGCCACCGCTGCGGACCATGCGCCGC
GCGTGCTCGTCACCACCAGTCGTGCCCCTTCTGCGCGTCTCTCCCAGTTT
GCAAAGGAGCTTCGTTTGTTACTGCCCGGCGCCACTCGCCTCAACCGCGG
AAACCTCGTTGTGTCGCAGCTTGTTGCTTCGTGTCGTGCCAATGCCTTTT
CCGATCTCATCATTGCGCACGAACACCGTGGCCAGCCTGATGGCCTTATT
GTGTCGCATTTACCGTACGGACCCACGGCCTTCTTCAACATTTCCAACTG
TGTCATGCGACACGACGTGCATGAACGCCTGCCAAACATGTCCGAAGCGT
TGCCGCATCTGCTGTTTCATAACTTCAACACCGATCTGGGTGCGCGCGTC
GTCACCGTGCTCAAGCATCTGTTCCCACCGCCCAAGCAAACATCGCGTCG
CGTCATCACGTTTGCCAACTTTGACGACACCATCTCCATGCGTCACCACA
CGTTTGTGCCAGCGCATTCCGCCGAGCATGTGCAGCTCACCGAGGCCGGG
CCGCGCTTCGAGCTGCAGCTGTACCAGTTACGATTGGGCACCGTCGACAA
CGGCGAGGCAGACAACGAATGGGTGCTACGTCCGCACATGAACACCGCCA
AGCGCCGCCGCGCCCTCGGCTAG
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