Gchil6944.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6944.t1
Unique Name	Gchil6944.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004398_pilon	contig	tig00004398_pilon:213574..214692 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FQY6
PFAMs	Abhydrolase_1,Abhydrolase_6,Hydrolase_4
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0016787
Evalue	7.21e-68
EggNOG OGs	COG0596@1\|root,KOG1454@2759\|Eukaryota
Description	regulation of endocannabinoid signaling pathway
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6944	Gchil6944	Gracilaria chilensis NLEC103_M9 male	gene	tig00004398_pilon 213574..214692 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6944.t1.start1	Gchil6944.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004398_pilon 213574..213576 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6944.t1.CDS1	Gchil6944.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004398_pilon 213574..214692 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6944.t1.exon1	Gchil6944.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004398_pilon 213574..214692 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6944.t1.stop1	Gchil6944.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004398_pilon 214690..214692 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6944.t1	Gchil6944.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004398_pilon 213574..214692 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004398_pilon:213574..214692+
coding sequence from alignment at tig00004398_pilon:213574..214692+

mRNA sequence

>Gchil6944.t1 ID=Gchil6944.t1|Name=Gchil6944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=373bp
MASLSFAIPLPQNSRSLHFLINHDPRAKTIDGVYPNAASVGPTLRERMGL
SGRNGPTRAQLDTTSYAPCVPAEAAVKIEDPRAQAMLQRIEYTPIQTDLP
KQTIHTSHVNVSSSKSAESTKLVFLHGFDSNMLEYRFILPLLEQENARAH
FVDILGWGLTECPTVPEFRYGPSAKREHLRAFVDQVVGGGPLVLIGASIG
GAIAIDFALNFPDLVQGMVLLSPQAFVDKPSSPVMNIGGLAGMGAEVLRS
RWLRRMAGQMSYESPELRKSDDVLKIGGLHCQRPGWKEAAVDFIKGEGYC
VSSRVRDVTCPTLVMWGEQDRVLPKKNAERFVEEMTNCRVQYVENCGHCP
HIEKPSLVTDNILEFARSGWHV*

spliced messenger RNA

>Gchil6944.t1 ID=Gchil6944.t1|Name=Gchil6944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00004398_pilon:213574..214692+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTCTTTCATTCGCAATTCCTTTGCCGCAAAATAGTCGCTCCCT
GCATTTTTTAATCAATCATGACCCTCGTGCCAAAACAATTGACGGTGTTT
ACCCAAATGCTGCCTCTGTGGGTCCGACTCTAAGAGAAAGAATGGGTCTT
TCGGGTAGGAACGGACCAACAAGAGCACAATTGGACACAACAAGTTATGC
GCCATGTGTGCCTGCAGAGGCTGCCGTAAAAATAGAGGACCCCAGAGCTC
AAGCCATGCTGCAACGTATTGAATACACACCAATTCAAACAGATTTACCA
AAACAGACAATCCATACCTCTCATGTCAATGTATCTAGCTCAAAATCTGC
TGAATCAACAAAGCTAGTCTTCTTGCACGGCTTCGACTCTAACATGTTGG
AATATCGTTTCATACTACCATTACTGGAACAGGAAAATGCACGAGCCCAT
TTTGTTGACATTCTAGGCTGGGGTCTCACCGAGTGTCCCACCGTGCCGGA
ATTCAGGTACGGTCCAAGTGCAAAACGCGAGCACCTCCGAGCGTTTGTTG
ACCAAGTCGTAGGAGGAGGGCCTCTAGTTTTGATAGGAGCATCTATAGGT
GGTGCTATTGCCATCGATTTCGCCCTCAATTTTCCTGATCTTGTACAAGG
GATGGTGCTGTTATCACCGCAGGCATTTGTGGATAAACCGTCCTCCCCAG
TGATGAATATCGGCGGTCTGGCCGGCATGGGGGCGGAAGTGTTGCGCTCT
AGATGGCTGCGTCGAATGGCAGGGCAAATGTCGTACGAAAGCCCCGAACT
TCGCAAAAGCGATGACGTGTTGAAAATTGGTGGTTTACATTGTCAAAGGC
CAGGGTGGAAGGAAGCGGCCGTCGATTTCATCAAGGGGGAGGGGTATTGC
GTGAGCAGCCGCGTGCGAGATGTAACCTGTCCAACATTGGTGATGTGGGG
TGAGCAGGATCGAGTGTTACCGAAGAAAAACGCAGAGCGGTTTGTAGAGG
AAATGACCAACTGCCGCGTGCAGTATGTGGAAAACTGCGGACATTGCCCA
CATATCGAAAAACCTTCATTGGTGACAGATAACATTCTAGAGTTTGCGCG
CAGCGGATGGCACGTTTGA

protein sequence of Gchil6944.t1

>Gchil6944.t1 ID=Gchil6944.t1|Name=Gchil6944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=373bp
MASLSFAIPLPQNSRSLHFLINHDPRAKTIDGVYPNAASVGPTLRERMGL
SGRNGPTRAQLDTTSYAPCVPAEAAVKIEDPRAQAMLQRIEYTPIQTDLP
KQTIHTSHVNVSSSKSAESTKLVFLHGFDSNMLEYRFILPLLEQENARAH
FVDILGWGLTECPTVPEFRYGPSAKREHLRAFVDQVVGGGPLVLIGASIG
GAIAIDFALNFPDLVQGMVLLSPQAFVDKPSSPVMNIGGLAGMGAEVLRS
RWLRRMAGQMSYESPELRKSDDVLKIGGLHCQRPGWKEAAVDFIKGEGYC
VSSRVRDVTCPTLVMWGEQDRVLPKKNAERFVEEMTNCRVQYVENCGHCP
HIEKPSLVTDNILEFARSGWHV*

mRNA from alignment at tig00004398_pilon:213574..214692+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6944.t1 ID=Gchil6944.t1|Name=Gchil6944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00004398_pilon:213574..214692+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTCTTTCATTCGCAATTCCTTTGCCGCAAAATAGTCGCTCCCT
GCATTTTTTAATCAATCATGACCCTCGTGCCAAAACAATTGACGGTGTTT
ACCCAAATGCTGCCTCTGTGGGTCCGACTCTAAGAGAAAGAATGGGTCTT
TCGGGTAGGAACGGACCAACAAGAGCACAATTGGACACAACAAGTTATGC
GCCATGTGTGCCTGCAGAGGCTGCCGTAAAAATAGAGGACCCCAGAGCTC
AAGCCATGCTGCAACGTATTGAATACACACCAATTCAAACAGATTTACCA
AAACAGACAATCCATACCTCTCATGTCAATGTATCTAGCTCAAAATCTGC
TGAATCAACAAAGCTAGTCTTCTTGCACGGCTTCGACTCTAACATGTTGG
AATATCGTTTCATACTACCATTACTGGAACAGGAAAATGCACGAGCCCAT
TTTGTTGACATTCTAGGCTGGGGTCTCACCGAGTGTCCCACCGTGCCGGA
ATTCAGGTACGGTCCAAGTGCAAAACGCGAGCACCTCCGAGCGTTTGTTG
ACCAAGTCGTAGGAGGAGGGCCTCTAGTTTTGATAGGAGCATCTATAGGT
GGTGCTATTGCCATCGATTTCGCCCTCAATTTTCCTGATCTTGTACAAGG
GATGGTGCTGTTATCACCGCAGGCATTTGTGGATAAACCGTCCTCCCCAG
TGATGAATATCGGCGGTCTGGCCGGCATGGGGGCGGAAGTGTTGCGCTCT
AGATGGCTGCGTCGAATGGCAGGGCAAATGTCGTACGAAAGCCCCGAACT
TCGCAAAAGCGATGACGTGTTGAAAATTGGTGGTTTACATTGTCAAAGGC
CAGGGTGGAAGGAAGCGGCCGTCGATTTCATCAAGGGGGAGGGGTATTGC
GTGAGCAGCCGCGTGCGAGATGTAACCTGTCCAACATTGGTGATGTGGGG
TGAGCAGGATCGAGTGTTACCGAAGAAAAACGCAGAGCGGTTTGTAGAGG
AAATGACCAACTGCCGCGTGCAGTATGTGGAAAACTGCGGACATTGCCCA
CATATCGAAAAACCTTCATTGGTGACAGATAACATTCTAGAGTTTGCGCG
CAGCGGATGGCACGTTTGA

Coding sequence (CDS) from alignment at tig00004398_pilon:213574..214692+

>Gchil6944.t1 ID=Gchil6944.t1|Name=Gchil6944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00004398_pilon:213574..214692+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTCTTTCATTCGCAATTCCTTTGCCGCAAAATAGTCGCTCCCT
GCATTTTTTAATCAATCATGACCCTCGTGCCAAAACAATTGACGGTGTTT
ACCCAAATGCTGCCTCTGTGGGTCCGACTCTAAGAGAAAGAATGGGTCTT
TCGGGTAGGAACGGACCAACAAGAGCACAATTGGACACAACAAGTTATGC
GCCATGTGTGCCTGCAGAGGCTGCCGTAAAAATAGAGGACCCCAGAGCTC
AAGCCATGCTGCAACGTATTGAATACACACCAATTCAAACAGATTTACCA
AAACAGACAATCCATACCTCTCATGTCAATGTATCTAGCTCAAAATCTGC
TGAATCAACAAAGCTAGTCTTCTTGCACGGCTTCGACTCTAACATGTTGG
AATATCGTTTCATACTACCATTACTGGAACAGGAAAATGCACGAGCCCAT
TTTGTTGACATTCTAGGCTGGGGTCTCACCGAGTGTCCCACCGTGCCGGA
ATTCAGGTACGGTCCAAGTGCAAAACGCGAGCACCTCCGAGCGTTTGTTG
ACCAAGTCGTAGGAGGAGGGCCTCTAGTTTTGATAGGAGCATCTATAGGT
GGTGCTATTGCCATCGATTTCGCCCTCAATTTTCCTGATCTTGTACAAGG
GATGGTGCTGTTATCACCGCAGGCATTTGTGGATAAACCGTCCTCCCCAG
TGATGAATATCGGCGGTCTGGCCGGCATGGGGGCGGAAGTGTTGCGCTCT
AGATGGCTGCGTCGAATGGCAGGGCAAATGTCGTACGAAAGCCCCGAACT
TCGCAAAAGCGATGACGTGTTGAAAATTGGTGGTTTACATTGTCAAAGGC
CAGGGTGGAAGGAAGCGGCCGTCGATTTCATCAAGGGGGAGGGGTATTGC
GTGAGCAGCCGCGTGCGAGATGTAACCTGTCCAACATTGGTGATGTGGGG
TGAGCAGGATCGAGTGTTACCGAAGAAAAACGCAGAGCGGTTTGTAGAGG
AAATGACCAACTGCCGCGTGCAGTATGTGGAAAACTGCGGACATTGCCCA
CATATCGAAAAACCTTCATTGGTGACAGATAACATTCTAGAGTTTGCGCG
CAGCGGATGGCACGTTTGA