Gchil6942.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6942.t1
Unique Name	Gchil6942.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	404

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004398_pilon	contig	tig00004398_pilon:210301..211512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706983.1
PFAMs	RETICULATA-like
Max annot lvl	2759\|Eukaryota
GOs	GO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006979,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009628,GO:0009648,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0099402,GO:1901700
Evalue	2.26e-71
EggNOG OGs	2CM9Q@1\|root,2QPQK@2759\|Eukaryota
Description	Protein RETICULATA-related
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6942	Gchil6942	Gracilaria chilensis NLEC103_M9 male	gene	tig00004398_pilon 210301..211512 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6942.t1.start1	Gchil6942.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004398_pilon 210301..210303 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6942.t1.CDS1	Gchil6942.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004398_pilon 210301..211512 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6942.t1.exon1	Gchil6942.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004398_pilon 210301..211512 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6942.t1.stop1	Gchil6942.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004398_pilon 211510..211512 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6942.t1	Gchil6942.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004398_pilon 210301..211512 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004398_pilon:210301..211512+
coding sequence from alignment at tig00004398_pilon:210301..211512+

mRNA sequence

>Gchil6942.t1 ID=Gchil6942.t1|Name=Gchil6942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=404bp
MKTSTFVPSLSLVTGATQHSHYSLRLSCRSSLLCTTGRRKHTLFSLQRTV
CSNDGDSLTPDSNNDAPTGIPTNQRFDQKVEATRRNSTPESSRRDVDGTD
IGDSNGGFRSGGSAGGSGGGSGGGGHGSYDGHELPEDLRSALAFGSLSQE
SLKRYFDALRHPIMRLLMTIPAYRTRALADSAFFFKLMVQELIGNGTALA
SEIAVRGKDIVDELEYVASDLIVGTVVEAAFVWLLAPTLSLPTLSGSWLS
RFLSSLPSHVFQPSNAIQQFTLTQRAASFLYAGMQYTCIGFVAGIVGTAI
TYGLIEGRKCVEKTYKPERPMPAVIPNSAAWGVFMGVSSNTRFQLVEGLE
LGIAKLFAGKAKAIVTGSIIALRFANNYWGGVQFVQFFRYLGLHATGEGT
DSH*

spliced messenger RNA

>Gchil6942.t1 ID=Gchil6942.t1|Name=Gchil6942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00004398_pilon:210301..211512+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACGAGCACGTTTGTCCCATCCTTGTCTCTCGTAACCGGAGCGAC
TCAGCATTCTCATTATTCACTTCGACTCTCTTGTCGGAGTAGTTTGCTTT
GCACGACTGGTAGGAGAAAGCACACTCTCTTCTCACTCCAGAGAACAGTA
TGTTCAAACGATGGAGATTCACTGACACCAGATTCGAACAATGATGCTCC
CACTGGGATTCCAACTAATCAAAGGTTTGACCAAAAAGTCGAAGCTACGC
GGCGAAACTCAACTCCAGAATCGAGCAGGAGGGATGTAGATGGTACCGAT
ATCGGCGATTCGAATGGGGGATTCCGTAGCGGTGGAAGCGCAGGTGGCAG
CGGTGGTGGATCTGGGGGTGGTGGGCACGGGAGCTATGACGGGCACGAAC
TGCCTGAAGATCTTCGGTCCGCATTGGCTTTCGGATCACTTTCTCAGGAA
AGCCTGAAAAGGTATTTCGATGCCCTAAGGCACCCTATAATGCGACTTCT
CATGACAATTCCTGCGTATCGAACTAGAGCGTTGGCAGATTCAGCTTTCT
TTTTTAAGCTGATGGTTCAGGAGCTGATCGGGAATGGCACAGCTCTGGCC
TCTGAAATAGCTGTCCGCGGGAAAGACATTGTTGATGAACTCGAATATGT
AGCATCAGATCTCATTGTCGGAACAGTGGTTGAAGCGGCTTTTGTATGGC
TTCTTGCTCCTACTCTTTCCCTTCCCACTTTGTCTGGGTCGTGGCTATCT
CGCTTTCTTTCATCACTACCATCGCACGTATTCCAACCATCAAATGCGAT
TCAACAATTCACATTAACCCAGCGTGCCGCATCTTTCTTGTACGCCGGAA
TGCAATATACTTGTATTGGTTTCGTTGCGGGAATTGTTGGAACTGCTATA
ACGTACGGACTGATAGAGGGAAGAAAATGCGTCGAGAAAACTTATAAACC
AGAAAGGCCCATGCCTGCTGTGATTCCGAACTCTGCTGCATGGGGAGTCT
TTATGGGTGTTTCGAGCAATACACGTTTTCAGCTCGTAGAAGGCCTTGAG
CTTGGAATTGCCAAGTTGTTTGCCGGAAAAGCCAAAGCCATTGTGACCGG
CTCCATCATTGCGTTGCGGTTCGCAAACAATTATTGGGGCGGGGTCCAAT
TCGTACAGTTCTTTAGATATCTCGGTTTACATGCAACCGGTGAGGGAACA
GATTCGCACTAG

protein sequence of Gchil6942.t1

>Gchil6942.t1 ID=Gchil6942.t1|Name=Gchil6942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=404bp
MKTSTFVPSLSLVTGATQHSHYSLRLSCRSSLLCTTGRRKHTLFSLQRTV
CSNDGDSLTPDSNNDAPTGIPTNQRFDQKVEATRRNSTPESSRRDVDGTD
IGDSNGGFRSGGSAGGSGGGSGGGGHGSYDGHELPEDLRSALAFGSLSQE
SLKRYFDALRHPIMRLLMTIPAYRTRALADSAFFFKLMVQELIGNGTALA
SEIAVRGKDIVDELEYVASDLIVGTVVEAAFVWLLAPTLSLPTLSGSWLS
RFLSSLPSHVFQPSNAIQQFTLTQRAASFLYAGMQYTCIGFVAGIVGTAI
TYGLIEGRKCVEKTYKPERPMPAVIPNSAAWGVFMGVSSNTRFQLVEGLE
LGIAKLFAGKAKAIVTGSIIALRFANNYWGGVQFVQFFRYLGLHATGEGT
DSH*

mRNA from alignment at tig00004398_pilon:210301..211512+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6942.t1 ID=Gchil6942.t1|Name=Gchil6942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at tig00004398_pilon:210301..211512+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACGAGCACGTTTGTCCCATCCTTGTCTCTCGTAACCGGAGCGAC
TCAGCATTCTCATTATTCACTTCGACTCTCTTGTCGGAGTAGTTTGCTTT
GCACGACTGGTAGGAGAAAGCACACTCTCTTCTCACTCCAGAGAACAGTA
TGTTCAAACGATGGAGATTCACTGACACCAGATTCGAACAATGATGCTCC
CACTGGGATTCCAACTAATCAAAGGTTTGACCAAAAAGTCGAAGCTACGC
GGCGAAACTCAACTCCAGAATCGAGCAGGAGGGATGTAGATGGTACCGAT
ATCGGCGATTCGAATGGGGGATTCCGTAGCGGTGGAAGCGCAGGTGGCAG
CGGTGGTGGATCTGGGGGTGGTGGGCACGGGAGCTATGACGGGCACGAAC
TGCCTGAAGATCTTCGGTCCGCATTGGCTTTCGGATCACTTTCTCAGGAA
AGCCTGAAAAGGTATTTCGATGCCCTAAGGCACCCTATAATGCGACTTCT
CATGACAATTCCTGCGTATCGAACTAGAGCGTTGGCAGATTCAGCTTTCT
TTTTTAAGCTGATGGTTCAGGAGCTGATCGGGAATGGCACAGCTCTGGCC
TCTGAAATAGCTGTCCGCGGGAAAGACATTGTTGATGAACTCGAATATGT
AGCATCAGATCTCATTGTCGGAACAGTGGTTGAAGCGGCTTTTGTATGGC
TTCTTGCTCCTACTCTTTCCCTTCCCACTTTGTCTGGGTCGTGGCTATCT
CGCTTTCTTTCATCACTACCATCGCACGTATTCCAACCATCAAATGCGAT
TCAACAATTCACATTAACCCAGCGTGCCGCATCTTTCTTGTACGCCGGAA
TGCAATATACTTGTATTGGTTTCGTTGCGGGAATTGTTGGAACTGCTATA
ACGTACGGACTGATAGAGGGAAGAAAATGCGTCGAGAAAACTTATAAACC
AGAAAGGCCCATGCCTGCTGTGATTCCGAACTCTGCTGCATGGGGAGTCT
TTATGGGTGTTTCGAGCAATACACGTTTTCAGCTCGTAGAAGGCCTTGAG
CTTGGAATTGCCAAGTTGTTTGCCGGAAAAGCCAAAGCCATTGTGACCGG
CTCCATCATTGCGTTGCGGTTCGCAAACAATTATTGGGGCGGGGTCCAAT
TCGTACAGTTCTTTAGATATCTCGGTTTACATGCAACCGGTGAGGGAACA
GATTCGCACTAG

Coding sequence (CDS) from alignment at tig00004398_pilon:210301..211512+

>Gchil6942.t1 ID=Gchil6942.t1|Name=Gchil6942.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1212bp|location=Sequence derived from alignment at tig00004398_pilon:210301..211512+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACGAGCACGTTTGTCCCATCCTTGTCTCTCGTAACCGGAGCGAC
TCAGCATTCTCATTATTCACTTCGACTCTCTTGTCGGAGTAGTTTGCTTT
GCACGACTGGTAGGAGAAAGCACACTCTCTTCTCACTCCAGAGAACAGTA
TGTTCAAACGATGGAGATTCACTGACACCAGATTCGAACAATGATGCTCC
CACTGGGATTCCAACTAATCAAAGGTTTGACCAAAAAGTCGAAGCTACGC
GGCGAAACTCAACTCCAGAATCGAGCAGGAGGGATGTAGATGGTACCGAT
ATCGGCGATTCGAATGGGGGATTCCGTAGCGGTGGAAGCGCAGGTGGCAG
CGGTGGTGGATCTGGGGGTGGTGGGCACGGGAGCTATGACGGGCACGAAC
TGCCTGAAGATCTTCGGTCCGCATTGGCTTTCGGATCACTTTCTCAGGAA
AGCCTGAAAAGGTATTTCGATGCCCTAAGGCACCCTATAATGCGACTTCT
CATGACAATTCCTGCGTATCGAACTAGAGCGTTGGCAGATTCAGCTTTCT
TTTTTAAGCTGATGGTTCAGGAGCTGATCGGGAATGGCACAGCTCTGGCC
TCTGAAATAGCTGTCCGCGGGAAAGACATTGTTGATGAACTCGAATATGT
AGCATCAGATCTCATTGTCGGAACAGTGGTTGAAGCGGCTTTTGTATGGC
TTCTTGCTCCTACTCTTTCCCTTCCCACTTTGTCTGGGTCGTGGCTATCT
CGCTTTCTTTCATCACTACCATCGCACGTATTCCAACCATCAAATGCGAT
TCAACAATTCACATTAACCCAGCGTGCCGCATCTTTCTTGTACGCCGGAA
TGCAATATACTTGTATTGGTTTCGTTGCGGGAATTGTTGGAACTGCTATA
ACGTACGGACTGATAGAGGGAAGAAAATGCGTCGAGAAAACTTATAAACC
AGAAAGGCCCATGCCTGCTGTGATTCCGAACTCTGCTGCATGGGGAGTCT
TTATGGGTGTTTCGAGCAATACACGTTTTCAGCTCGTAGAAGGCCTTGAG
CTTGGAATTGCCAAGTTGTTTGCCGGAAAAGCCAAAGCCATTGTGACCGG
CTCCATCATTGCGTTGCGGTTCGCAAACAATTATTGGGGCGGGGTCCAAT
TCGTACAGTTCTTTAGATATCTCGGTTTACATGCAACCGGTGAGGGAACA
GATTCGCACTAG