Gchil6940.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6940.t1
Unique NameGchil6940.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004398_piloncontigtig00004398_pilon:148762..149880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706790.1
Preferred nameARO7
PFAMsPDT
Max annot lvl2759|Eukaryota
KEGG rclassRC03116
KEGG koko:K01850
KEGG ReactionR01715
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00024,M00025
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004106,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006568,GO:0006570,GO:0006571,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016866,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223
Evalue1.82e-86
EggNOG OGsCOG1605@1|root,KOG0795@2759|Eukaryota
EC5.4.99.5
Descriptionchorismate mutase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6940Gchil6940Gracilaria chilensis NLEC103_M9 malegenetig00004398_pilon 148762..149880 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6940.t1.stop1Gchil6940.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004398_pilon 148762..148764 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6940.t1.CDS1Gchil6940.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004398_pilon 148762..149880 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6940.t1.exon1Gchil6940.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004398_pilon 148762..149880 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6940.t1.start1Gchil6940.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004398_pilon 149878..149880 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6940.t1Gchil6940.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004398_pilon 148762..149880 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6940.t1 ID=Gchil6940.t1|Name=Gchil6940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=373bp
MPSSSSFTHPRQVALRQLRQLAAEPSVDPDPDPDPTMSPPAFLPPCALSL
RPGQLCTSQCRPPPPSSSPRPSLRAAQVVACERARHHHQPGVDFYGIPNP
PPGSALLLSDLRERLIRQEETIIFALIERAQFKLNDPIYTPGAFDVPKPY
HTFSQFVLYQIEQVYAKVRRYTSPDEHPFSPPHLLPTPILTQLDYPKTLK
QNNINVNEDIEKIYNNFILQTICQPGDDQNYGSSATSDVACLQALSKRIH
YGKFIAESKCQADEPLYRQLASKRDRSAIWDQLSNEQVERVLLKRVENKA
RSYGSDISVEGPRDVFKVDPITISEMYKKFIIPLTKEVEVEYVIQRYEGV
NYEEPANHQTDAFVTNLKRWTS*
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spliced messenger RNA

>Gchil6940.t1 ID=Gchil6940.t1|Name=Gchil6940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00004398_pilon:148762..149880- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCATCGTCATCGTTCACGCACCCCCGCCAAGTCGCCCTCCGCCA
GCTTCGCCAGCTTGCCGCGGAACCCTCCGTCGACCCCGACCCCGACCCCG
ATCCCACAATGAGTCCGCCTGCTTTTCTGCCGCCGTGCGCCCTCTCCTTG
CGCCCTGGCCAGCTGTGCACCTCGCAGTGTCGGCCGCCGCCGCCGTCCTC
TTCGCCGCGTCCTTCGCTTCGTGCTGCCCAGGTCGTGGCGTGTGAACGTG
CTAGGCATCACCACCAACCAGGTGTTGACTTTTACGGAATTCCCAACCCA
CCGCCCGGTTCCGCGCTTCTCCTCTCCGATCTACGCGAACGCCTTATTCG
CCAGGAGGAGACAATCATCTTTGCGCTCATCGAGCGCGCCCAGTTCAAGC
TCAACGATCCCATATACACTCCCGGCGCCTTTGATGTACCAAAGCCCTAC
CACACCTTTTCCCAGTTTGTGCTGTATCAGATAGAGCAGGTGTACGCCAA
AGTGCGCAGGTACACCTCTCCGGACGAACATCCGTTTTCGCCGCCTCATC
TCCTCCCCACCCCCATTCTCACTCAACTAGACTACCCGAAAACCCTCAAA
CAGAATAACATCAACGTCAACGAAGACATAGAAAAGATCTACAACAACTT
CATTTTGCAAACGATTTGTCAGCCCGGAGATGATCAAAACTATGGCAGTT
CTGCAACCAGTGACGTCGCTTGTTTACAAGCGCTGTCCAAGCGAATTCAT
TACGGCAAGTTCATCGCTGAATCAAAGTGTCAGGCTGATGAACCCCTTTA
CAGGCAACTGGCGTCAAAACGAGACCGTTCCGCCATTTGGGACCAGCTTT
CAAACGAACAAGTTGAGCGCGTTCTCCTTAAAAGAGTTGAGAATAAAGCC
AGAAGCTACGGTTCGGACATAAGCGTGGAGGGGCCGAGAGACGTTTTCAA
AGTTGACCCCATCACCATATCTGAGATGTATAAAAAGTTTATTATTCCTC
TAACCAAGGAAGTAGAGGTCGAATACGTCATTCAAAGATACGAGGGTGTC
AATTATGAAGAGCCTGCAAATCATCAAACGGATGCATTTGTCACTAATTT
GAAGCGATGGACCAGTTAA
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protein sequence of Gchil6940.t1

>Gchil6940.t1 ID=Gchil6940.t1|Name=Gchil6940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=373bp
MPSSSSFTHPRQVALRQLRQLAAEPSVDPDPDPDPTMSPPAFLPPCALSL
RPGQLCTSQCRPPPPSSSPRPSLRAAQVVACERARHHHQPGVDFYGIPNP
PPGSALLLSDLRERLIRQEETIIFALIERAQFKLNDPIYTPGAFDVPKPY
HTFSQFVLYQIEQVYAKVRRYTSPDEHPFSPPHLLPTPILTQLDYPKTLK
QNNINVNEDIEKIYNNFILQTICQPGDDQNYGSSATSDVACLQALSKRIH
YGKFIAESKCQADEPLYRQLASKRDRSAIWDQLSNEQVERVLLKRVENKA
RSYGSDISVEGPRDVFKVDPITISEMYKKFIIPLTKEVEVEYVIQRYEGV
NYEEPANHQTDAFVTNLKRWTS*
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mRNA from alignment at tig00004398_pilon:148762..149880-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6940.t1 ID=Gchil6940.t1|Name=Gchil6940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00004398_pilon:148762..149880- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCATCGTCATCGTTCACGCACCCCCGCCAAGTCGCCCTCCGCCA
GCTTCGCCAGCTTGCCGCGGAACCCTCCGTCGACCCCGACCCCGACCCCG
ATCCCACAATGAGTCCGCCTGCTTTTCTGCCGCCGTGCGCCCTCTCCTTG
CGCCCTGGCCAGCTGTGCACCTCGCAGTGTCGGCCGCCGCCGCCGTCCTC
TTCGCCGCGTCCTTCGCTTCGTGCTGCCCAGGTCGTGGCGTGTGAACGTG
CTAGGCATCACCACCAACCAGGTGTTGACTTTTACGGAATTCCCAACCCA
CCGCCCGGTTCCGCGCTTCTCCTCTCCGATCTACGCGAACGCCTTATTCG
CCAGGAGGAGACAATCATCTTTGCGCTCATCGAGCGCGCCCAGTTCAAGC
TCAACGATCCCATATACACTCCCGGCGCCTTTGATGTACCAAAGCCCTAC
CACACCTTTTCCCAGTTTGTGCTGTATCAGATAGAGCAGGTGTACGCCAA
AGTGCGCAGGTACACCTCTCCGGACGAACATCCGTTTTCGCCGCCTCATC
TCCTCCCCACCCCCATTCTCACTCAACTAGACTACCCGAAAACCCTCAAA
CAGAATAACATCAACGTCAACGAAGACATAGAAAAGATCTACAACAACTT
CATTTTGCAAACGATTTGTCAGCCCGGAGATGATCAAAACTATGGCAGTT
CTGCAACCAGTGACGTCGCTTGTTTACAAGCGCTGTCCAAGCGAATTCAT
TACGGCAAGTTCATCGCTGAATCAAAGTGTCAGGCTGATGAACCCCTTTA
CAGGCAACTGGCGTCAAAACGAGACCGTTCCGCCATTTGGGACCAGCTTT
CAAACGAACAAGTTGAGCGCGTTCTCCTTAAAAGAGTTGAGAATAAAGCC
AGAAGCTACGGTTCGGACATAAGCGTGGAGGGGCCGAGAGACGTTTTCAA
AGTTGACCCCATCACCATATCTGAGATGTATAAAAAGTTTATTATTCCTC
TAACCAAGGAAGTAGAGGTCGAATACGTCATTCAAAGATACGAGGGTGTC
AATTATGAAGAGCCTGCAAATCATCAAACGGATGCATTTGTCACTAATTT
GAAGCGATGGACCAGTTAA
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Coding sequence (CDS) from alignment at tig00004398_pilon:148762..149880-

>Gchil6940.t1 ID=Gchil6940.t1|Name=Gchil6940.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00004398_pilon:148762..149880- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCATCGTCATCGTTCACGCACCCCCGCCAAGTCGCCCTCCGCCA
GCTTCGCCAGCTTGCCGCGGAACCCTCCGTCGACCCCGACCCCGACCCCG
ATCCCACAATGAGTCCGCCTGCTTTTCTGCCGCCGTGCGCCCTCTCCTTG
CGCCCTGGCCAGCTGTGCACCTCGCAGTGTCGGCCGCCGCCGCCGTCCTC
TTCGCCGCGTCCTTCGCTTCGTGCTGCCCAGGTCGTGGCGTGTGAACGTG
CTAGGCATCACCACCAACCAGGTGTTGACTTTTACGGAATTCCCAACCCA
CCGCCCGGTTCCGCGCTTCTCCTCTCCGATCTACGCGAACGCCTTATTCG
CCAGGAGGAGACAATCATCTTTGCGCTCATCGAGCGCGCCCAGTTCAAGC
TCAACGATCCCATATACACTCCCGGCGCCTTTGATGTACCAAAGCCCTAC
CACACCTTTTCCCAGTTTGTGCTGTATCAGATAGAGCAGGTGTACGCCAA
AGTGCGCAGGTACACCTCTCCGGACGAACATCCGTTTTCGCCGCCTCATC
TCCTCCCCACCCCCATTCTCACTCAACTAGACTACCCGAAAACCCTCAAA
CAGAATAACATCAACGTCAACGAAGACATAGAAAAGATCTACAACAACTT
CATTTTGCAAACGATTTGTCAGCCCGGAGATGATCAAAACTATGGCAGTT
CTGCAACCAGTGACGTCGCTTGTTTACAAGCGCTGTCCAAGCGAATTCAT
TACGGCAAGTTCATCGCTGAATCAAAGTGTCAGGCTGATGAACCCCTTTA
CAGGCAACTGGCGTCAAAACGAGACCGTTCCGCCATTTGGGACCAGCTTT
CAAACGAACAAGTTGAGCGCGTTCTCCTTAAAAGAGTTGAGAATAAAGCC
AGAAGCTACGGTTCGGACATAAGCGTGGAGGGGCCGAGAGACGTTTTCAA
AGTTGACCCCATCACCATATCTGAGATGTATAAAAAGTTTATTATTCCTC
TAACCAAGGAAGTAGAGGTCGAATACGTCATTCAAAGATACGAGGGTGTC
AATTATGAAGAGCCTGCAAATCATCAAACGGATGCATTTGTCACTAATTT
GAAGCGATGGACCAGTTAA
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