Gchil6932.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6932.t1
Unique NameGchil6932.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length540
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:739693..741312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.009G088800.1
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K08832
Evalue1.98e-117
EggNOG OGsKOG1290@1|root,KOG1290@2759|Eukaryota,37JTM@33090|Viridiplantae,3GFDS@35493|Streptophyta
EC2.7.11.1
DescriptionSRSF protein kinase
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6932Gchil6932Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 739693..741312 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6932.t1.stop1Gchil6932.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 739693..739695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6932.t1.CDS1Gchil6932.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 739693..741312 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6932.t1.exon1Gchil6932.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 739693..741312 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6932.t1.start1Gchil6932.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 741310..741312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6932.t1Gchil6932.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 739693..741312 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6932.t1 ID=Gchil6932.t1|Name=Gchil6932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp
MGTAVEKRERARFDSTADVQFPYHEDSESSLGEQTEQESLKKGGYHPVKV
GDTFKNGTYRALCRLGVGHFSTVWLCLDNNRFAPGSSSGSRVNRVVALKI
QKSAPDYSEAARDEIKLLQAVRTKDRYRREPVISLLDHFELSGPNGRHVC
LVFDVLGNSLLKLIRRFNYKGAPLSLVRRISKDILMGLHFLHSEADIIHT
DLKPENVLFEIPSHMMHEVEVKCTAYSQYLIDRRRNEILNGSTASESSGV
LNGVRPTSKTYRRNQKKRLKAKAKREAERESVSSAPSEYPFGSLVPMMSP
SRSTPSKPVETTKPVTADSVKYVPKYDSRDSDSSGTKTKTDGDAFEKIEL
GSIIDKDEMFARGVVQIADLGNACWISKHFTEDIQTRQYRSPEVIIGTKY
NSSVDIWSAACLIFEILTGDYLFDPHSSLEYDRDEDHLALMIELLGPMPR
CLTRKGEFSRELFTRNGELRHIKHLDSFPLIEVLEEKYKFRREEASLISS
FLEPMLRFDPDKRATAKECLAHAFVAEISEAGVVANVET*
back to top

spliced messenger RNA

>Gchil6932.t1 ID=Gchil6932.t1|Name=Gchil6932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00004376_pilon:739693..741312- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTACAGCTGTCGAAAAACGCGAGCGTGCTCGCTTTGATTCCACTGC
AGATGTGCAGTTTCCCTACCATGAAGACTCCGAATCAAGTCTTGGTGAAC
AAACCGAACAAGAATCTCTCAAGAAAGGTGGTTACCACCCCGTGAAGGTC
GGGGACACCTTCAAAAACGGCACTTACCGCGCGCTTTGCCGTCTGGGCGT
TGGTCATTTCTCCACTGTCTGGCTTTGTTTGGATAACAATCGTTTTGCCC
CTGGAAGCTCTTCTGGCTCGCGGGTTAATCGCGTGGTGGCTCTTAAGATT
CAAAAATCAGCCCCGGATTATAGTGAAGCTGCAAGGGACGAGATCAAGCT
TTTGCAGGCCGTGCGAACTAAGGACCGATATCGACGCGAGCCAGTTATTT
CTCTTCTGGACCATTTTGAACTCTCAGGACCGAATGGTAGGCACGTATGT
CTTGTGTTTGATGTACTCGGAAACTCACTTTTAAAGCTTATTCGACGATT
TAACTACAAGGGAGCTCCATTGTCATTAGTTCGTCGAATCTCCAAGGATA
TCCTCATGGGGTTGCATTTTTTACATTCTGAGGCTGACATCATCCACACG
GACCTGAAACCGGAGAATGTTTTGTTTGAGATACCGTCGCATATGATGCA
TGAAGTGGAAGTGAAATGTACGGCATACAGTCAGTACTTAATTGATCGTC
GCCGAAATGAAATATTGAACGGTAGTACTGCATCTGAAAGCTCAGGCGTG
TTAAATGGTGTGAGACCCACTTCAAAAACATATCGTAGAAACCAAAAAAA
GCGGCTGAAGGCGAAGGCGAAGCGCGAAGCGGAACGCGAATCTGTGTCCT
CTGCTCCATCTGAGTATCCATTTGGTTCCTTGGTGCCCATGATGTCACCA
TCGAGATCAACACCTTCTAAACCTGTAGAGACAACGAAACCTGTAACAGC
GGATAGCGTGAAATATGTCCCGAAGTACGACTCGCGTGACTCGGATAGCT
CTGGAACAAAAACGAAAACTGATGGAGATGCCTTCGAAAAGATTGAACTT
GGTTCCATAATAGACAAGGATGAAATGTTTGCACGTGGTGTGGTGCAAAT
CGCCGACCTCGGGAACGCCTGTTGGATAAGTAAACATTTCACCGAAGACA
TTCAGACAAGACAGTATCGAAGTCCTGAGGTAATCATTGGGACGAAATAC
AATAGCTCTGTGGATATTTGGTCGGCAGCATGTCTGATTTTTGAGATCTT
AACTGGTGACTATTTGTTCGACCCTCACTCAAGTCTGGAATACGATAGAG
ACGAAGATCATCTAGCTCTAATGATTGAACTACTGGGACCGATGCCGAGA
TGTTTGACTCGAAAGGGCGAGTTCAGTCGAGAATTGTTTACGCGAAACGG
AGAATTGAGACATATCAAACATTTGGACTCGTTTCCCCTCATTGAGGTGC
TTGAAGAGAAATACAAATTCAGACGAGAAGAAGCTTCTTTAATCAGTTCG
TTCCTGGAACCCATGCTTCGGTTCGATCCTGATAAAAGGGCGACAGCCAA
AGAGTGCCTTGCACATGCTTTTGTTGCAGAAATCAGTGAAGCCGGAGTCG
TGGCTAATGTGGAGACGTGA
back to top

protein sequence of Gchil6932.t1

>Gchil6932.t1 ID=Gchil6932.t1|Name=Gchil6932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=540bp
MGTAVEKRERARFDSTADVQFPYHEDSESSLGEQTEQESLKKGGYHPVKV
GDTFKNGTYRALCRLGVGHFSTVWLCLDNNRFAPGSSSGSRVNRVVALKI
QKSAPDYSEAARDEIKLLQAVRTKDRYRREPVISLLDHFELSGPNGRHVC
LVFDVLGNSLLKLIRRFNYKGAPLSLVRRISKDILMGLHFLHSEADIIHT
DLKPENVLFEIPSHMMHEVEVKCTAYSQYLIDRRRNEILNGSTASESSGV
LNGVRPTSKTYRRNQKKRLKAKAKREAERESVSSAPSEYPFGSLVPMMSP
SRSTPSKPVETTKPVTADSVKYVPKYDSRDSDSSGTKTKTDGDAFEKIEL
GSIIDKDEMFARGVVQIADLGNACWISKHFTEDIQTRQYRSPEVIIGTKY
NSSVDIWSAACLIFEILTGDYLFDPHSSLEYDRDEDHLALMIELLGPMPR
CLTRKGEFSRELFTRNGELRHIKHLDSFPLIEVLEEKYKFRREEASLISS
FLEPMLRFDPDKRATAKECLAHAFVAEISEAGVVANVET*
back to top

mRNA from alignment at tig00004376_pilon:739693..741312-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6932.t1 ID=Gchil6932.t1|Name=Gchil6932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00004376_pilon:739693..741312- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTACAGCTGTCGAAAAACGCGAGCGTGCTCGCTTTGATTCCACTGC
AGATGTGCAGTTTCCCTACCATGAAGACTCCGAATCAAGTCTTGGTGAAC
AAACCGAACAAGAATCTCTCAAGAAAGGTGGTTACCACCCCGTGAAGGTC
GGGGACACCTTCAAAAACGGCACTTACCGCGCGCTTTGCCGTCTGGGCGT
TGGTCATTTCTCCACTGTCTGGCTTTGTTTGGATAACAATCGTTTTGCCC
CTGGAAGCTCTTCTGGCTCGCGGGTTAATCGCGTGGTGGCTCTTAAGATT
CAAAAATCAGCCCCGGATTATAGTGAAGCTGCAAGGGACGAGATCAAGCT
TTTGCAGGCCGTGCGAACTAAGGACCGATATCGACGCGAGCCAGTTATTT
CTCTTCTGGACCATTTTGAACTCTCAGGACCGAATGGTAGGCACGTATGT
CTTGTGTTTGATGTACTCGGAAACTCACTTTTAAAGCTTATTCGACGATT
TAACTACAAGGGAGCTCCATTGTCATTAGTTCGTCGAATCTCCAAGGATA
TCCTCATGGGGTTGCATTTTTTACATTCTGAGGCTGACATCATCCACACG
GACCTGAAACCGGAGAATGTTTTGTTTGAGATACCGTCGCATATGATGCA
TGAAGTGGAAGTGAAATGTACGGCATACAGTCAGTACTTAATTGATCGTC
GCCGAAATGAAATATTGAACGGTAGTACTGCATCTGAAAGCTCAGGCGTG
TTAAATGGTGTGAGACCCACTTCAAAAACATATCGTAGAAACCAAAAAAA
GCGGCTGAAGGCGAAGGCGAAGCGCGAAGCGGAACGCGAATCTGTGTCCT
CTGCTCCATCTGAGTATCCATTTGGTTCCTTGGTGCCCATGATGTCACCA
TCGAGATCAACACCTTCTAAACCTGTAGAGACAACGAAACCTGTAACAGC
GGATAGCGTGAAATATGTCCCGAAGTACGACTCGCGTGACTCGGATAGCT
CTGGAACAAAAACGAAAACTGATGGAGATGCCTTCGAAAAGATTGAACTT
GGTTCCATAATAGACAAGGATGAAATGTTTGCACGTGGTGTGGTGCAAAT
CGCCGACCTCGGGAACGCCTGTTGGATAAGTAAACATTTCACCGAAGACA
TTCAGACAAGACAGTATCGAAGTCCTGAGGTAATCATTGGGACGAAATAC
AATAGCTCTGTGGATATTTGGTCGGCAGCATGTCTGATTTTTGAGATCTT
AACTGGTGACTATTTGTTCGACCCTCACTCAAGTCTGGAATACGATAGAG
ACGAAGATCATCTAGCTCTAATGATTGAACTACTGGGACCGATGCCGAGA
TGTTTGACTCGAAAGGGCGAGTTCAGTCGAGAATTGTTTACGCGAAACGG
AGAATTGAGACATATCAAACATTTGGACTCGTTTCCCCTCATTGAGGTGC
TTGAAGAGAAATACAAATTCAGACGAGAAGAAGCTTCTTTAATCAGTTCG
TTCCTGGAACCCATGCTTCGGTTCGATCCTGATAAAAGGGCGACAGCCAA
AGAGTGCCTTGCACATGCTTTTGTTGCAGAAATCAGTGAAGCCGGAGTCG
TGGCTAATGTGGAGACGTGA
back to top

Coding sequence (CDS) from alignment at tig00004376_pilon:739693..741312-

>Gchil6932.t1 ID=Gchil6932.t1|Name=Gchil6932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00004376_pilon:739693..741312- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTACAGCTGTCGAAAAACGCGAGCGTGCTCGCTTTGATTCCACTGC
AGATGTGCAGTTTCCCTACCATGAAGACTCCGAATCAAGTCTTGGTGAAC
AAACCGAACAAGAATCTCTCAAGAAAGGTGGTTACCACCCCGTGAAGGTC
GGGGACACCTTCAAAAACGGCACTTACCGCGCGCTTTGCCGTCTGGGCGT
TGGTCATTTCTCCACTGTCTGGCTTTGTTTGGATAACAATCGTTTTGCCC
CTGGAAGCTCTTCTGGCTCGCGGGTTAATCGCGTGGTGGCTCTTAAGATT
CAAAAATCAGCCCCGGATTATAGTGAAGCTGCAAGGGACGAGATCAAGCT
TTTGCAGGCCGTGCGAACTAAGGACCGATATCGACGCGAGCCAGTTATTT
CTCTTCTGGACCATTTTGAACTCTCAGGACCGAATGGTAGGCACGTATGT
CTTGTGTTTGATGTACTCGGAAACTCACTTTTAAAGCTTATTCGACGATT
TAACTACAAGGGAGCTCCATTGTCATTAGTTCGTCGAATCTCCAAGGATA
TCCTCATGGGGTTGCATTTTTTACATTCTGAGGCTGACATCATCCACACG
GACCTGAAACCGGAGAATGTTTTGTTTGAGATACCGTCGCATATGATGCA
TGAAGTGGAAGTGAAATGTACGGCATACAGTCAGTACTTAATTGATCGTC
GCCGAAATGAAATATTGAACGGTAGTACTGCATCTGAAAGCTCAGGCGTG
TTAAATGGTGTGAGACCCACTTCAAAAACATATCGTAGAAACCAAAAAAA
GCGGCTGAAGGCGAAGGCGAAGCGCGAAGCGGAACGCGAATCTGTGTCCT
CTGCTCCATCTGAGTATCCATTTGGTTCCTTGGTGCCCATGATGTCACCA
TCGAGATCAACACCTTCTAAACCTGTAGAGACAACGAAACCTGTAACAGC
GGATAGCGTGAAATATGTCCCGAAGTACGACTCGCGTGACTCGGATAGCT
CTGGAACAAAAACGAAAACTGATGGAGATGCCTTCGAAAAGATTGAACTT
GGTTCCATAATAGACAAGGATGAAATGTTTGCACGTGGTGTGGTGCAAAT
CGCCGACCTCGGGAACGCCTGTTGGATAAGTAAACATTTCACCGAAGACA
TTCAGACAAGACAGTATCGAAGTCCTGAGGTAATCATTGGGACGAAATAC
AATAGCTCTGTGGATATTTGGTCGGCAGCATGTCTGATTTTTGAGATCTT
AACTGGTGACTATTTGTTCGACCCTCACTCAAGTCTGGAATACGATAGAG
ACGAAGATCATCTAGCTCTAATGATTGAACTACTGGGACCGATGCCGAGA
TGTTTGACTCGAAAGGGCGAGTTCAGTCGAGAATTGTTTACGCGAAACGG
AGAATTGAGACATATCAAACATTTGGACTCGTTTCCCCTCATTGAGGTGC
TTGAAGAGAAATACAAATTCAGACGAGAAGAAGCTTCTTTAATCAGTTCG
TTCCTGGAACCCATGCTTCGGTTCGATCCTGATAAAAGGGCGACAGCCAA
AGAGTGCCTTGCACATGCTTTTGTTGCAGAAATCAGTGAAGCCGGAGTCG
TGGCTAATGTGGAGACGTGA
back to top