Gchil6928.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6928.t1
Unique Name	Gchil6928.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	633

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:729830..731728 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703514.1
Preferred name	TRMT2A
PFAMs	Methyltransf_31,RRM_1,tRNA_U5-meth_tr,zf-CCCH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15331,ko:K15332
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Evalue	2.42e-103
EggNOG OGs	COG2265@1\|root,KOG2187@2759\|Eukaryota
EC	2.1.1.35
Description	S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6928	Gchil6928	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 729830..731728 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6928.t1.start1	Gchil6928.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 729830..729832 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6928.t1.CDS1	Gchil6928.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 729830..731728 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6928.t1.exon1	Gchil6928.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 729830..731728 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6928.t1.stop1	Gchil6928.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 731726..731728 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6928.t1	Gchil6928.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 729830..731728 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:729830..731728+
coding sequence from alignment at tig00004376_pilon:729830..731728+

mRNA sequence

>Gchil6928.t1 ID=Gchil6928.t1|Name=Gchil6928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=633bp
MGNWLSAETKKRPVRYGLSYTCPETPPRKRPRPSEIVTPSTIESKTAESN
SPDENPPLTIDATADGSVHRYIVTCSTIFWCTRKDMVKMLSKMEGMPPYC
GLHKISKWDHFFITFPNQTCADKAVARLSNFQHRGESFRVRQTAQHSAKR
MRIDDTLARSPANESSIQKGVCLTAADVTAKLRNIPYEQQIVKKNGKWTN
ALQTVTKNLRKEVRQQGRIRWLDELFQQNENRGKGSPPPCCPIQDVLRAI
KPQESKYYRNKNEFTIGYSPESCGLDHDFHKSELTIGYALGLVRNGQVYI
SPVDENCVTTSELALEVARCLTPVLRSLKLPPYDKRAHKGYWRQITCRQG
IRTGELIVSVVVNPYEKDFCEIEKRERREADQDSRDAVVEALKKRFGDKK
KLGVFWQPSNHVSAVSSDIPAIHLYGIDGLHEELCGLMFRVQPTAFFQVN
TLMAERMYSLIADLAGVDKDTVVFDVCCGTGTIGLSLAERAHSVVGIEMN
ECAVEDAIYNAKLNNIKNATFIAGKVEHHIHNAIKHVPDNKKCVAILDPP
RAGLPMNVVAAVRAMRSVQRIVYVACEPNNFWKNALGFFRPRSKAFRLEP
FRPVKAYGIDLFPHTDHGELAVLLERDDVMMK*

spliced messenger RNA

>Gchil6928.t1 ID=Gchil6928.t1|Name=Gchil6928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00004376_pilon:729830..731728+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAACTGGTTGTCAGCAGAAACAAAGAAACGTCCAGTGCGATACGG
ATTAAGTTACACATGCCCCGAAACGCCCCCGAGAAAGCGACCGCGACCCT
CGGAAATCGTCACGCCATCCACTATCGAATCGAAAACTGCGGAATCCAAC
TCGCCAGACGAAAACCCCCCCCTCACCATCGACGCAACCGCAGATGGCTC
CGTTCATCGCTACATTGTAACCTGTTCCACCATCTTCTGGTGCACCAGAA
AAGATATGGTGAAAATGCTGTCCAAAATGGAAGGTATGCCTCCGTATTGT
GGTCTTCACAAGATAAGCAAGTGGGATCACTTTTTCATTACGTTTCCTAA
CCAGACTTGTGCGGACAAGGCTGTCGCGCGCCTCTCCAACTTTCAGCACC
GCGGAGAGAGTTTCCGGGTGAGACAAACCGCGCAGCATTCTGCAAAACGA
ATGAGGATTGACGATACTCTCGCTCGTTCTCCCGCAAATGAAAGCTCGAT
ACAAAAAGGCGTTTGTCTTACTGCAGCTGACGTCACTGCAAAGTTGAGAA
ACATTCCCTATGAGCAGCAGATTGTGAAGAAGAATGGAAAGTGGACCAAT
GCGTTGCAAACCGTAACCAAGAATTTGAGAAAGGAAGTGCGTCAACAGGG
TCGCATACGGTGGTTAGATGAATTGTTTCAGCAGAATGAAAATCGCGGCA
AAGGAAGTCCGCCCCCCTGTTGTCCGATTCAAGATGTTTTACGCGCTATC
AAACCCCAAGAGAGCAAGTACTATCGCAATAAGAATGAATTTACCATTGG
ATATTCACCAGAAAGCTGTGGCTTGGATCATGACTTTCACAAATCAGAAC
TTACAATCGGCTATGCTTTGGGACTTGTTAGAAATGGCCAGGTTTATATA
TCACCCGTGGATGAGAATTGTGTTACTACCAGCGAGTTAGCTTTGGAGGT
TGCGAGATGTCTCACTCCGGTTCTGCGATCCTTGAAATTGCCTCCGTACG
ACAAGCGCGCTCACAAGGGTTATTGGAGACAAATAACCTGTAGACAAGGT
ATAAGAACAGGTGAACTCATTGTTTCTGTCGTCGTCAACCCGTACGAAAA
AGATTTTTGTGAGATCGAGAAACGGGAAAGGAGAGAAGCTGACCAAGACA
GCCGTGACGCTGTTGTCGAAGCTCTCAAGAAACGTTTCGGCGACAAGAAG
AAACTGGGTGTATTTTGGCAGCCTTCAAATCACGTCTCTGCGGTTTCCAG
TGATATTCCTGCAATTCACTTGTATGGTATAGATGGGTTGCATGAGGAAC
TATGTGGTTTAATGTTTCGAGTACAACCCACAGCTTTCTTTCAGGTGAAC
ACATTAATGGCAGAGCGAATGTACAGTCTTATTGCGGATTTGGCAGGTGT
CGATAAAGACACAGTAGTTTTTGACGTATGTTGCGGCACGGGTACCATTG
GCCTATCTCTTGCTGAAAGAGCACATAGTGTCGTTGGAATCGAAATGAAT
GAATGTGCGGTTGAAGATGCGATTTATAATGCCAAGCTGAACAACATCAA
GAACGCAACGTTCATTGCAGGGAAAGTTGAGCATCACATTCACAATGCCA
TCAAACACGTACCAGACAACAAGAAATGCGTAGCAATTCTGGACCCTCCA
CGAGCAGGTCTGCCAATGAATGTTGTGGCCGCAGTGCGAGCGATGCGCTC
TGTGCAGAGAATCGTATACGTTGCTTGCGAACCTAACAACTTTTGGAAGA
ACGCTCTCGGTTTCTTCAGACCACGTTCGAAAGCATTTCGGCTAGAACCT
TTTCGACCGGTCAAAGCATATGGAATCGATCTGTTTCCACACACAGACCA
TGGTGAGCTAGCTGTCCTCCTCGAACGCGATGATGTGATGATGAAATAG

protein sequence of Gchil6928.t1

>Gchil6928.t1 ID=Gchil6928.t1|Name=Gchil6928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=633bp
MGNWLSAETKKRPVRYGLSYTCPETPPRKRPRPSEIVTPSTIESKTAESN
SPDENPPLTIDATADGSVHRYIVTCSTIFWCTRKDMVKMLSKMEGMPPYC
GLHKISKWDHFFITFPNQTCADKAVARLSNFQHRGESFRVRQTAQHSAKR
MRIDDTLARSPANESSIQKGVCLTAADVTAKLRNIPYEQQIVKKNGKWTN
ALQTVTKNLRKEVRQQGRIRWLDELFQQNENRGKGSPPPCCPIQDVLRAI
KPQESKYYRNKNEFTIGYSPESCGLDHDFHKSELTIGYALGLVRNGQVYI
SPVDENCVTTSELALEVARCLTPVLRSLKLPPYDKRAHKGYWRQITCRQG
IRTGELIVSVVVNPYEKDFCEIEKRERREADQDSRDAVVEALKKRFGDKK
KLGVFWQPSNHVSAVSSDIPAIHLYGIDGLHEELCGLMFRVQPTAFFQVN
TLMAERMYSLIADLAGVDKDTVVFDVCCGTGTIGLSLAERAHSVVGIEMN
ECAVEDAIYNAKLNNIKNATFIAGKVEHHIHNAIKHVPDNKKCVAILDPP
RAGLPMNVVAAVRAMRSVQRIVYVACEPNNFWKNALGFFRPRSKAFRLEP
FRPVKAYGIDLFPHTDHGELAVLLERDDVMMK*

mRNA from alignment at tig00004376_pilon:729830..731728+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6928.t1 ID=Gchil6928.t1|Name=Gchil6928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1899bp|location=Sequence derived from alignment at tig00004376_pilon:729830..731728+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAACTGGTTGTCAGCAGAAACAAAGAAACGTCCAGTGCGATACGG
ATTAAGTTACACATGCCCCGAAACGCCCCCGAGAAAGCGACCGCGACCCT
CGGAAATCGTCACGCCATCCACTATCGAATCGAAAACTGCGGAATCCAAC
TCGCCAGACGAAAACCCCCCCCTCACCATCGACGCAACCGCAGATGGCTC
CGTTCATCGCTACATTGTAACCTGTTCCACCATCTTCTGGTGCACCAGAA
AAGATATGGTGAAAATGCTGTCCAAAATGGAAGGTATGCCTCCGTATTGT
GGTCTTCACAAGATAAGCAAGTGGGATCACTTTTTCATTACGTTTCCTAA
CCAGACTTGTGCGGACAAGGCTGTCGCGCGCCTCTCCAACTTTCAGCACC
GCGGAGAGAGTTTCCGGGTGAGACAAACCGCGCAGCATTCTGCAAAACGA
ATGAGGATTGACGATACTCTCGCTCGTTCTCCCGCAAATGAAAGCTCGAT
ACAAAAAGGCGTTTGTCTTACTGCAGCTGACGTCACTGCAAAGTTGAGAA
ACATTCCCTATGAGCAGCAGATTGTGAAGAAGAATGGAAAGTGGACCAAT
GCGTTGCAAACCGTAACCAAGAATTTGAGAAAGGAAGTGCGTCAACAGGG
TCGCATACGGTGGTTAGATGAATTGTTTCAGCAGAATGAAAATCGCGGCA
AAGGAAGTCCGCCCCCCTGTTGTCCGATTCAAGATGTTTTACGCGCTATC
AAACCCCAAGAGAGCAAGTACTATCGCAATAAGAATGAATTTACCATTGG
ATATTCACCAGAAAGCTGTGGCTTGGATCATGACTTTCACAAATCAGAAC
TTACAATCGGCTATGCTTTGGGACTTGTTAGAAATGGCCAGGTTTATATA
TCACCCGTGGATGAGAATTGTGTTACTACCAGCGAGTTAGCTTTGGAGGT
TGCGAGATGTCTCACTCCGGTTCTGCGATCCTTGAAATTGCCTCCGTACG
ACAAGCGCGCTCACAAGGGTTATTGGAGACAAATAACCTGTAGACAAGGT
ATAAGAACAGGTGAACTCATTGTTTCTGTCGTCGTCAACCCGTACGAAAA
AGATTTTTGTGAGATCGAGAAACGGGAAAGGAGAGAAGCTGACCAAGACA
GCCGTGACGCTGTTGTCGAAGCTCTCAAGAAACGTTTCGGCGACAAGAAG
AAACTGGGTGTATTTTGGCAGCCTTCAAATCACGTCTCTGCGGTTTCCAG
TGATATTCCTGCAATTCACTTGTATGGTATAGATGGGTTGCATGAGGAAC
TATGTGGTTTAATGTTTCGAGTACAACCCACAGCTTTCTTTCAGGTGAAC
ACATTAATGGCAGAGCGAATGTACAGTCTTATTGCGGATTTGGCAGGTGT
CGATAAAGACACAGTAGTTTTTGACGTATGTTGCGGCACGGGTACCATTG
GCCTATCTCTTGCTGAAAGAGCACATAGTGTCGTTGGAATCGAAATGAAT
GAATGTGCGGTTGAAGATGCGATTTATAATGCCAAGCTGAACAACATCAA
GAACGCAACGTTCATTGCAGGGAAAGTTGAGCATCACATTCACAATGCCA
TCAAACACGTACCAGACAACAAGAAATGCGTAGCAATTCTGGACCCTCCA
CGAGCAGGTCTGCCAATGAATGTTGTGGCCGCAGTGCGAGCGATGCGCTC
TGTGCAGAGAATCGTATACGTTGCTTGCGAACCTAACAACTTTTGGAAGA
ACGCTCTCGGTTTCTTCAGACCACGTTCGAAAGCATTTCGGCTAGAACCT
TTTCGACCGGTCAAAGCATATGGAATCGATCTGTTTCCACACACAGACCA
TGGTGAGCTAGCTGTCCTCCTCGAACGCGATGATGTGATGATGAAATAG

Coding sequence (CDS) from alignment at tig00004376_pilon:729830..731728+

>Gchil6928.t1 ID=Gchil6928.t1|Name=Gchil6928.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1899bp|location=Sequence derived from alignment at tig00004376_pilon:729830..731728+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGGAACTGGTTGTCAGCAGAAACAAAGAAACGTCCAGTGCGATACGG
ATTAAGTTACACATGCCCCGAAACGCCCCCGAGAAAGCGACCGCGACCCT
CGGAAATCGTCACGCCATCCACTATCGAATCGAAAACTGCGGAATCCAAC
TCGCCAGACGAAAACCCCCCCCTCACCATCGACGCAACCGCAGATGGCTC
CGTTCATCGCTACATTGTAACCTGTTCCACCATCTTCTGGTGCACCAGAA
AAGATATGGTGAAAATGCTGTCCAAAATGGAAGGTATGCCTCCGTATTGT
GGTCTTCACAAGATAAGCAAGTGGGATCACTTTTTCATTACGTTTCCTAA
CCAGACTTGTGCGGACAAGGCTGTCGCGCGCCTCTCCAACTTTCAGCACC
GCGGAGAGAGTTTCCGGGTGAGACAAACCGCGCAGCATTCTGCAAAACGA
ATGAGGATTGACGATACTCTCGCTCGTTCTCCCGCAAATGAAAGCTCGAT
ACAAAAAGGCGTTTGTCTTACTGCAGCTGACGTCACTGCAAAGTTGAGAA
ACATTCCCTATGAGCAGCAGATTGTGAAGAAGAATGGAAAGTGGACCAAT
GCGTTGCAAACCGTAACCAAGAATTTGAGAAAGGAAGTGCGTCAACAGGG
TCGCATACGGTGGTTAGATGAATTGTTTCAGCAGAATGAAAATCGCGGCA
AAGGAAGTCCGCCCCCCTGTTGTCCGATTCAAGATGTTTTACGCGCTATC
AAACCCCAAGAGAGCAAGTACTATCGCAATAAGAATGAATTTACCATTGG
ATATTCACCAGAAAGCTGTGGCTTGGATCATGACTTTCACAAATCAGAAC
TTACAATCGGCTATGCTTTGGGACTTGTTAGAAATGGCCAGGTTTATATA
TCACCCGTGGATGAGAATTGTGTTACTACCAGCGAGTTAGCTTTGGAGGT
TGCGAGATGTCTCACTCCGGTTCTGCGATCCTTGAAATTGCCTCCGTACG
ACAAGCGCGCTCACAAGGGTTATTGGAGACAAATAACCTGTAGACAAGGT
ATAAGAACAGGTGAACTCATTGTTTCTGTCGTCGTCAACCCGTACGAAAA
AGATTTTTGTGAGATCGAGAAACGGGAAAGGAGAGAAGCTGACCAAGACA
GCCGTGACGCTGTTGTCGAAGCTCTCAAGAAACGTTTCGGCGACAAGAAG
AAACTGGGTGTATTTTGGCAGCCTTCAAATCACGTCTCTGCGGTTTCCAG
TGATATTCCTGCAATTCACTTGTATGGTATAGATGGGTTGCATGAGGAAC
TATGTGGTTTAATGTTTCGAGTACAACCCACAGCTTTCTTTCAGGTGAAC
ACATTAATGGCAGAGCGAATGTACAGTCTTATTGCGGATTTGGCAGGTGT
CGATAAAGACACAGTAGTTTTTGACGTATGTTGCGGCACGGGTACCATTG
GCCTATCTCTTGCTGAAAGAGCACATAGTGTCGTTGGAATCGAAATGAAT
GAATGTGCGGTTGAAGATGCGATTTATAATGCCAAGCTGAACAACATCAA
GAACGCAACGTTCATTGCAGGGAAAGTTGAGCATCACATTCACAATGCCA
TCAAACACGTACCAGACAACAAGAAATGCGTAGCAATTCTGGACCCTCCA
CGAGCAGGTCTGCCAATGAATGTTGTGGCCGCAGTGCGAGCGATGCGCTC
TGTGCAGAGAATCGTATACGTTGCTTGCGAACCTAACAACTTTTGGAAGA
ACGCTCTCGGTTTCTTCAGACCACGTTCGAAAGCATTTCGGCTAGAACCT
TTTCGACCGGTCAAAGCATATGGAATCGATCTGTTTCCACACACAGACCA
TGGTGAGCTAGCTGTCCTCCTCGAACGCGATGATGTGATGATGAAATAG