Gchil6921.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6921.t1
Unique NameGchil6921.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:696040..696843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005849714.1
PFAMsMethyltransf_11
Max annot lvl3041|Chlorophyta
KEGG koko:K17803
Evalue1.05e-43
EggNOG OGsCOG0500@1|root,KOG4300@2759|Eukaryota,37NZW@33090|Viridiplantae,34KY2@3041|Chlorophyta
DescriptionubiE/COQ5 methyltransferase family
COG categoryQ
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6921Gchil6921Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 696040..696843 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6921.t1.stop1Gchil6921.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 696040..696042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6921.t1.CDS1Gchil6921.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 696040..696843 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6921.t1.exon1Gchil6921.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 696040..696843 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6921.t1.start1Gchil6921.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 696841..696843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6921.t1Gchil6921.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 696040..696843 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6921.t1 ID=Gchil6921.t1|Name=Gchil6921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MTRKTVCPFFAHPGVLSRGQQRFHLKVRHAATGVTQRKLAVCSLTRRQIV
RGLFSIPSLVLGYSEEAEYDDFAETYDELDGSNYLTNLLGFTDLRSELLS
RAVGHVLETGIGTGVNIPYYDPKKVSSLTGIDLSSTMLAKALQRSERYKI
PVTLLKASADMTGFPESSFDTVVDTFCLCVYEDPSNVLLEMRRLVKPGGR
VLLLEHSASTNRLVAAYQDIIAKPNATLSKGCYSNQRVVEMAVNVGFKPI
RIRTILEGTIVSLELDT*
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spliced messenger RNA

>Gchil6921.t1 ID=Gchil6921.t1|Name=Gchil6921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004376_pilon:696040..696843- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGCAAAACGGTCTGTCCCTTTTTCGCTCATCCTGGGGTTCTTTC
TCGAGGTCAACAAAGGTTTCACCTGAAAGTGCGGCACGCGGCAACAGGGG
TAACTCAACGAAAACTAGCTGTATGTTCGCTGACTCGGCGCCAGATAGTG
CGTGGGCTATTTTCAATCCCCAGCTTAGTTTTAGGATACTCTGAAGAGGC
TGAATACGATGATTTTGCGGAGACATACGATGAACTGGACGGTTCGAATT
ACTTAACAAACCTTCTCGGATTTACAGATCTCCGATCTGAGCTGCTTTCT
CGCGCTGTTGGTCACGTATTGGAAACTGGCATTGGAACTGGAGTTAATAT
TCCTTACTATGACCCAAAGAAGGTTTCGTCTCTTACAGGAATAGATTTGA
GCTCTACCATGCTTGCAAAAGCACTGCAAAGGTCAGAGCGCTACAAAATT
CCGGTAACTCTCCTAAAAGCATCGGCAGACATGACTGGATTTCCGGAGTC
TTCATTCGACACTGTTGTGGACACGTTCTGCCTCTGTGTTTATGAAGACC
CCTCGAATGTTTTGCTAGAAATGCGACGATTGGTGAAACCTGGCGGACGG
GTTCTTCTTCTTGAACACTCCGCCAGCACAAATCGCCTCGTAGCAGCTTA
TCAGGATATCATCGCAAAGCCGAACGCGACATTATCCAAAGGGTGTTACT
CCAATCAGAGAGTGGTAGAAATGGCTGTCAATGTCGGTTTCAAACCGATA
AGAATAAGGACTATCCTAGAAGGGACAATTGTTAGTCTTGAGCTTGACAC
CTGA
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protein sequence of Gchil6921.t1

>Gchil6921.t1 ID=Gchil6921.t1|Name=Gchil6921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MTRKTVCPFFAHPGVLSRGQQRFHLKVRHAATGVTQRKLAVCSLTRRQIV
RGLFSIPSLVLGYSEEAEYDDFAETYDELDGSNYLTNLLGFTDLRSELLS
RAVGHVLETGIGTGVNIPYYDPKKVSSLTGIDLSSTMLAKALQRSERYKI
PVTLLKASADMTGFPESSFDTVVDTFCLCVYEDPSNVLLEMRRLVKPGGR
VLLLEHSASTNRLVAAYQDIIAKPNATLSKGCYSNQRVVEMAVNVGFKPI
RIRTILEGTIVSLELDT*
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mRNA from alignment at tig00004376_pilon:696040..696843-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6921.t1 ID=Gchil6921.t1|Name=Gchil6921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004376_pilon:696040..696843- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCAAAACGGTCTGTCCCTTTTTCGCTCATCCTGGGGTTCTTTC
TCGAGGTCAACAAAGGTTTCACCTGAAAGTGCGGCACGCGGCAACAGGGG
TAACTCAACGAAAACTAGCTGTATGTTCGCTGACTCGGCGCCAGATAGTG
CGTGGGCTATTTTCAATCCCCAGCTTAGTTTTAGGATACTCTGAAGAGGC
TGAATACGATGATTTTGCGGAGACATACGATGAACTGGACGGTTCGAATT
ACTTAACAAACCTTCTCGGATTTACAGATCTCCGATCTGAGCTGCTTTCT
CGCGCTGTTGGTCACGTATTGGAAACTGGCATTGGAACTGGAGTTAATAT
TCCTTACTATGACCCAAAGAAGGTTTCGTCTCTTACAGGAATAGATTTGA
GCTCTACCATGCTTGCAAAAGCACTGCAAAGGTCAGAGCGCTACAAAATT
CCGGTAACTCTCCTAAAAGCATCGGCAGACATGACTGGATTTCCGGAGTC
TTCATTCGACACTGTTGTGGACACGTTCTGCCTCTGTGTTTATGAAGACC
CCTCGAATGTTTTGCTAGAAATGCGACGATTGGTGAAACCTGGCGGACGG
GTTCTTCTTCTTGAACACTCCGCCAGCACAAATCGCCTCGTAGCAGCTTA
TCAGGATATCATCGCAAAGCCGAACGCGACATTATCCAAAGGGTGTTACT
CCAATCAGAGAGTGGTAGAAATGGCTGTCAATGTCGGTTTCAAACCGATA
AGAATAAGGACTATCCTAGAAGGGACAATTGTTAGTCTTGAGCTTGACAC
CTGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:696040..696843-

>Gchil6921.t1 ID=Gchil6921.t1|Name=Gchil6921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00004376_pilon:696040..696843- (Gracilaria chilensis NLEC103_M9 male)
ATGACGCGCAAAACGGTCTGTCCCTTTTTCGCTCATCCTGGGGTTCTTTC
TCGAGGTCAACAAAGGTTTCACCTGAAAGTGCGGCACGCGGCAACAGGGG
TAACTCAACGAAAACTAGCTGTATGTTCGCTGACTCGGCGCCAGATAGTG
CGTGGGCTATTTTCAATCCCCAGCTTAGTTTTAGGATACTCTGAAGAGGC
TGAATACGATGATTTTGCGGAGACATACGATGAACTGGACGGTTCGAATT
ACTTAACAAACCTTCTCGGATTTACAGATCTCCGATCTGAGCTGCTTTCT
CGCGCTGTTGGTCACGTATTGGAAACTGGCATTGGAACTGGAGTTAATAT
TCCTTACTATGACCCAAAGAAGGTTTCGTCTCTTACAGGAATAGATTTGA
GCTCTACCATGCTTGCAAAAGCACTGCAAAGGTCAGAGCGCTACAAAATT
CCGGTAACTCTCCTAAAAGCATCGGCAGACATGACTGGATTTCCGGAGTC
TTCATTCGACACTGTTGTGGACACGTTCTGCCTCTGTGTTTATGAAGACC
CCTCGAATGTTTTGCTAGAAATGCGACGATTGGTGAAACCTGGCGGACGG
GTTCTTCTTCTTGAACACTCCGCCAGCACAAATCGCCTCGTAGCAGCTTA
TCAGGATATCATCGCAAAGCCGAACGCGACATTATCCAAAGGGTGTTACT
CCAATCAGAGAGTGGTAGAAATGGCTGTCAATGTCGGTTTCAAACCGATA
AGAATAAGGACTATCCTAGAAGGGACAATTGTTAGTCTTGAGCTTGACAC
CTGA
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