Gchil692.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil692.t1
Unique NameGchil692.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004431_piloncontigtig00004431_pilon:146577..148212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3760.EMJ11064
PFAMsDKCLD,PUA,TruB_C_2,TruB_N
Max annot lvl35493|Streptophyta
KEGG koko:K11131
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000495,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009506,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016556,GO:0016853,GO:0016866,GO:0022613,GO:0030054,GO:0031118,GO:0031120,GO:0031123,GO:0031126,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0033979,GO:0034470,GO:0034641,GO:0034660,GO:0034964,GO:0040031,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:1901360,GO:1902494,GO:1990481,GO:1990904
Evalue3.41e-210
EggNOG OGsCOG0130@1|root,KOG2529@2759|Eukaryota,37JSV@33090|Viridiplantae,3GDKJ@35493|Streptophyta,4JK5R@91835|fabids
DescriptionH ACA ribonucleoprotein complex subunit
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil692Gchil692Gracilaria chilensis NLEC103_M9 malegenetig00004431_pilon 146577..148212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t1Gchil692.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004431_pilon 146577..148212 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t1.start1Gchil692.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004431_pilon 146577..146579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t1.CDS1Gchil692.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 146577..146642 +
Gchil692.t1.CDS2Gchil692.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 146776..148212 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t1.exon1Gchil692.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 146577..146642 +
Gchil692.t1.exon2Gchil692.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 146776..148212 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t1.intron1Gchil692.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004431_pilon 146643..146775 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil692.t1.stop1Gchil692.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004431_pilon 148210..148212 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil692.t1 ID=Gchil692.t1|Name=Gchil692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=501bp
MGTATEKDEQIQEEFVLKPLASRPELDTSQWPLLLKDYDKLNVRSSHFTP
IPVGHSPLKRPILEYMRYGVINLDKPSNPSSHEVVAWIKRILRVDKTGHS
GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYIGVLKLHGDLGENPVSKL
RRAVEMLTGALFQRPPLISAVKRQLRIRTIYEAKLLEYDEKKRLAVFWVK
CEAGTYIRTLCVHLGYILGVGGSMLELRRVRSGIMGEEENMVTLHDVLDA
MWVHDNQRDESYLRSVIQPLEALLVNFKRIVVKDTAVNAICYGAVLMIPG
VLRFDDDIEVSQEIVLITTKGEAIAIAIAEMHTAVIATCDHGRVARIKRV
IMERDTYPRAWGLGPVAGKKKGLIREGKLDKHGKPNEKTPTDWQNSYKDL
TTRQKDQEASQNASAILPENGEVQARVNGSEGKTEEIAHDNTPGMEVEDA
TTPENKRDKKRKKDKSSKKKRKRETADGSESEKKKKKKKKKKESQSSTED
*
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spliced messenger RNA

>Gchil692.t1 ID=Gchil692.t1|Name=Gchil692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00004431_pilon:146577..148212+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACAGCGACCGAAAAGGATGAACAGATCCAAGAAGAATTTGTCCT
CAAACCACTCGCATCTAGGCCCGAACTCGACACCTCACAGTGGCCTTTAC
TCCTCAAGGATTATGACAAGCTTAATGTGCGGTCTTCTCACTTTACTCCC
ATCCCAGTTGGCCACTCGCCTCTCAAGAGACCCATACTAGAATACATGCG
TTATGGCGTCATAAACCTCGATAAACCGTCCAATCCGTCCTCCCACGAAG
TTGTTGCATGGATCAAGAGAATCCTCCGTGTTGACAAGACTGGTCACTCT
GGTACACTTGACCCAAAGGTTACTGGAAATCTAATTGTCTGTATCGACCG
CGCCACGCGGTTAGTAAAGTCTCAGCAGGGTGCAGGAAAGGAGTACATTG
GAGTACTGAAGCTTCATGGTGACTTAGGAGAAAATCCAGTATCAAAACTG
CGAAGAGCTGTCGAGATGCTCACGGGTGCGTTGTTTCAAAGACCGCCTCT
CATATCAGCAGTGAAGAGACAACTTCGTATTCGGACTATCTATGAGGCAA
AGCTTCTTGAATATGACGAGAAGAAGCGTCTCGCAGTTTTTTGGGTCAAA
TGCGAAGCTGGAACTTATATCCGTACTCTGTGTGTACATCTAGGCTATAT
CTTAGGGGTAGGCGGTAGTATGCTGGAATTGCGCCGCGTTCGCAGTGGAA
TCATGGGAGAGGAGGAAAACATGGTGACTTTGCATGATGTTCTGGATGCA
ATGTGGGTTCACGACAACCAAAGAGACGAGTCATACTTGCGATCTGTCAT
CCAACCCCTCGAGGCTCTCCTTGTCAACTTCAAGCGTATCGTCGTGAAGG
ACACGGCCGTAAATGCCATTTGTTATGGCGCTGTGCTCATGATTCCAGGC
GTACTGCGTTTCGATGATGACATCGAAGTATCTCAGGAAATAGTGTTGAT
CACAACGAAAGGAGAGGCTATTGCAATCGCAATTGCTGAGATGCACACAG
CCGTCATTGCTACTTGTGATCACGGACGGGTGGCTCGGATCAAACGTGTT
ATAATGGAGAGGGATACCTACCCTCGCGCATGGGGCCTTGGACCTGTTGC
TGGGAAGAAGAAAGGACTGATACGAGAGGGAAAACTCGACAAGCATGGAA
AACCCAACGAGAAGACACCTACCGACTGGCAGAATTCCTACAAAGATTTG
ACCACTCGACAGAAGGACCAAGAGGCATCTCAAAATGCATCTGCGATCTT
ACCAGAGAATGGTGAAGTTCAAGCTCGCGTAAATGGCTCGGAAGGGAAAA
CAGAAGAAATTGCACACGACAATACACCCGGCATGGAAGTTGAAGACGCC
ACAACTCCCGAAAACAAGCGCGATAAAAAGAGAAAAAAAGACAAGTCTTC
AAAGAAGAAAAGGAAAAGAGAAACGGCGGACGGGTCAGAGTCTGagaaga
agaagaagaagaagaagaagaagaagGAGTCGCAGTCTTCCACTGAGGAT
TGA
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protein sequence of Gchil692.t1

>Gchil692.t1 ID=Gchil692.t1|Name=Gchil692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=501bp
MGTATEKDEQIQEEFVLKPLASRPELDTSQWPLLLKDYDKLNVRSSHFTP
IPVGHSPLKRPILEYMRYGVINLDKPSNPSSHEVVAWIKRILRVDKTGHS
GTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYIGVLKLHGDLGENPVSKL
RRAVEMLTGALFQRPPLISAVKRQLRIRTIYEAKLLEYDEKKRLAVFWVK
CEAGTYIRTLCVHLGYILGVGGSMLELRRVRSGIMGEEENMVTLHDVLDA
MWVHDNQRDESYLRSVIQPLEALLVNFKRIVVKDTAVNAICYGAVLMIPG
VLRFDDDIEVSQEIVLITTKGEAIAIAIAEMHTAVIATCDHGRVARIKRV
IMERDTYPRAWGLGPVAGKKKGLIREGKLDKHGKPNEKTPTDWQNSYKDL
TTRQKDQEASQNASAILPENGEVQARVNGSEGKTEEIAHDNTPGMEVEDA
TTPENKRDKKRKKDKSSKKKRKRETADGSESEKKKKKKKKKKESQSSTED
*
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mRNA from alignment at tig00004431_pilon:146577..148212+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil692.t1 ID=Gchil692.t1|Name=Gchil692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1636bp|location=Sequence derived from alignment at tig00004431_pilon:146577..148212+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACAGCGACCGAAAAGGATGAACAGATCCAAGAAGAATTTGTCCT
CAAACCACTCGCATCTGTACGTTCCCTCTGTCTTGTCTCCTATACGCTAT
TGATTACACCTCTTTTGTTTTATAACGCTCTAGCTGATGTTCCGCAGTCT
AATCTTTGCTTTCTTTTTCCCTCTCTCAAACCACCGTCTTATATTGCAGA
GGCCCGAACTCGACACCTCACAGTGGCCTTTACTCCTCAAGGATTATGAC
AAGCTTAATGTGCGGTCTTCTCACTTTACTCCCATCCCAGTTGGCCACTC
GCCTCTCAAGAGACCCATACTAGAATACATGCGTTATGGCGTCATAAACC
TCGATAAACCGTCCAATCCGTCCTCCCACGAAGTTGTTGCATGGATCAAG
AGAATCCTCCGTGTTGACAAGACTGGTCACTCTGGTACACTTGACCCAAA
GGTTACTGGAAATCTAATTGTCTGTATCGACCGCGCCACGCGGTTAGTAA
AGTCTCAGCAGGGTGCAGGAAAGGAGTACATTGGAGTACTGAAGCTTCAT
GGTGACTTAGGAGAAAATCCAGTATCAAAACTGCGAAGAGCTGTCGAGAT
GCTCACGGGTGCGTTGTTTCAAAGACCGCCTCTCATATCAGCAGTGAAGA
GACAACTTCGTATTCGGACTATCTATGAGGCAAAGCTTCTTGAATATGAC
GAGAAGAAGCGTCTCGCAGTTTTTTGGGTCAAATGCGAAGCTGGAACTTA
TATCCGTACTCTGTGTGTACATCTAGGCTATATCTTAGGGGTAGGCGGTA
GTATGCTGGAATTGCGCCGCGTTCGCAGTGGAATCATGGGAGAGGAGGAA
AACATGGTGACTTTGCATGATGTTCTGGATGCAATGTGGGTTCACGACAA
CCAAAGAGACGAGTCATACTTGCGATCTGTCATCCAACCCCTCGAGGCTC
TCCTTGTCAACTTCAAGCGTATCGTCGTGAAGGACACGGCCGTAAATGCC
ATTTGTTATGGCGCTGTGCTCATGATTCCAGGCGTACTGCGTTTCGATGA
TGACATCGAAGTATCTCAGGAAATAGTGTTGATCACAACGAAAGGAGAGG
CTATTGCAATCGCAATTGCTGAGATGCACACAGCCGTCATTGCTACTTGT
GATCACGGACGGGTGGCTCGGATCAAACGTGTTATAATGGAGAGGGATAC
CTACCCTCGCGCATGGGGCCTTGGACCTGTTGCTGGGAAGAAGAAAGGAC
TGATACGAGAGGGAAAACTCGACAAGCATGGAAAACCCAACGAGAAGACA
CCTACCGACTGGCAGAATTCCTACAAAGATTTGACCACTCGACAGAAGGA
CCAAGAGGCATCTCAAAATGCATCTGCGATCTTACCAGAGAATGGTGAAG
TTCAAGCTCGCGTAAATGGCTCGGAAGGGAAAACAGAAGAAATTGCACAC
GACAATACACCCGGCATGGAAGTTGAAGACGCCACAACTCCCGAAAACAA
GCGCGATAAAAAGAGAAAAAAAGACAAGTCTTCAAAGAAGAAAAGGAAAA
GAGAAACGGCGGACGGGTCAGAGTCTGagaagaagaagaagaagaagaag
aagaagaagGAGTCGCAGTCTTCCACTGAGGATTGA
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Coding sequence (CDS) from alignment at tig00004431_pilon:146577..148212+

>Gchil692.t1 ID=Gchil692.t1|Name=Gchil692.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1503bp|location=Sequence derived from alignment at tig00004431_pilon:146577..148212+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACAGCGACCGAAAAGGATGAACAGATCCAAGAAGAATTTGTCCT
CAAACCACTCGCATCTAGGCCCGAACTCGACACCTCACAGTGGCCTTTAC
TCCTCAAGGATTATGACAAGCTTAATGTGCGGTCTTCTCACTTTACTCCC
ATCCCAGTTGGCCACTCGCCTCTCAAGAGACCCATACTAGAATACATGCG
TTATGGCGTCATAAACCTCGATAAACCGTCCAATCCGTCCTCCCACGAAG
TTGTTGCATGGATCAAGAGAATCCTCCGTGTTGACAAGACTGGTCACTCT
GGTACACTTGACCCAAAGGTTACTGGAAATCTAATTGTCTGTATCGACCG
CGCCACGCGGTTAGTAAAGTCTCAGCAGGGTGCAGGAAAGGAGTACATTG
GAGTACTGAAGCTTCATGGTGACTTAGGAGAAAATCCAGTATCAAAACTG
CGAAGAGCTGTCGAGATGCTCACGGGTGCGTTGTTTCAAAGACCGCCTCT
CATATCAGCAGTGAAGAGACAACTTCGTATTCGGACTATCTATGAGGCAA
AGCTTCTTGAATATGACGAGAAGAAGCGTCTCGCAGTTTTTTGGGTCAAA
TGCGAAGCTGGAACTTATATCCGTACTCTGTGTGTACATCTAGGCTATAT
CTTAGGGGTAGGCGGTAGTATGCTGGAATTGCGCCGCGTTCGCAGTGGAA
TCATGGGAGAGGAGGAAAACATGGTGACTTTGCATGATGTTCTGGATGCA
ATGTGGGTTCACGACAACCAAAGAGACGAGTCATACTTGCGATCTGTCAT
CCAACCCCTCGAGGCTCTCCTTGTCAACTTCAAGCGTATCGTCGTGAAGG
ACACGGCCGTAAATGCCATTTGTTATGGCGCTGTGCTCATGATTCCAGGC
GTACTGCGTTTCGATGATGACATCGAAGTATCTCAGGAAATAGTGTTGAT
CACAACGAAAGGAGAGGCTATTGCAATCGCAATTGCTGAGATGCACACAG
CCGTCATTGCTACTTGTGATCACGGACGGGTGGCTCGGATCAAACGTGTT
ATAATGGAGAGGGATACCTACCCTCGCGCATGGGGCCTTGGACCTGTTGC
TGGGAAGAAGAAAGGACTGATACGAGAGGGAAAACTCGACAAGCATGGAA
AACCCAACGAGAAGACACCTACCGACTGGCAGAATTCCTACAAAGATTTG
ACCACTCGACAGAAGGACCAAGAGGCATCTCAAAATGCATCTGCGATCTT
ACCAGAGAATGGTGAAGTTCAAGCTCGCGTAAATGGCTCGGAAGGGAAAA
CAGAAGAAATTGCACACGACAATACACCCGGCATGGAAGTTGAAGACGCC
ACAACTCCCGAAAACAAGCGCGATAAAAAGAGAAAAAAAGACAAGTCTTC
AAAGAAGAAAAGGAAAAGAGAAACGGCGGACGGGTCAGAGTCTGagaaga
agaagaagaagaagaagaagaagaagGAGTCGCAGTCTTCCACTGAGGAT
TGA
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