Gchil6919.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6919.t1
Unique Name	Gchil6919.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	605

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:690707..692521 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps21268
PFAMs	PHD,zf-CXXC
Max annot lvl	2836\|Bacillariophyta
Evalue	1.52e-08
EggNOG OGs	COG0553@1\|root,KOG2177@1\|root,KOG0383@2759\|Eukaryota,KOG2177@2759\|Eukaryota,2XF8R@2836\|Bacillariophyta
Description	CXXC zinc finger domain
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6919	Gchil6919	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 690707..692521 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6919.t1.start1	Gchil6919.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 690707..690709 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6919.t1.CDS1	Gchil6919.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 690707..692521 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6919.t1.exon1	Gchil6919.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 690707..692521 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6919.t1.stop1	Gchil6919.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 692519..692521 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6919.t1	Gchil6919.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 690707..692521 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:690707..692521+
coding sequence from alignment at tig00004376_pilon:690707..692521+

mRNA sequence

>Gchil6919.t1 ID=Gchil6919.t1|Name=Gchil6919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=605bp
MSTEDNSPKNVGGFEESKREKSVLEPTGTEKKAMNDVNELEEKKKRLVKE
ARKNVTELLEAVEKDKAATPDDHSYTFSQNPLKVFSSADVVTVDKFVMSG
GIRSISMAMKKHASSSAVVSSATKTLVAMMFYDPSITENALKAGVIESLI
TALFAQVDADNEEAKVFTLKALRGFTQDEERRKEIYEGKGLEGIIAIMNR
NTDNPRVLSHAALLLSNLAFGNPQIKDATGAMGGIAAICNGMFTHLNHQG
MQARGSLALRNLSYNSELNHKIAGENGAAQALIKTIQQFPNDREVAHQSC
VALVNLSSANEENRKRIVKADGAPLFVKMMRMHPDSVTVNDDCVSIIRNI
SVGNPEGQVELGNCGGVAEVCKVMRKFEKRAQLAVKACAAVRYLSFLPEN
RDRVCSEGGMEAVVNILKFHSADPKIVEQALLAIGNATFQHDENKTRTGK
CGGIVEIIKALEKHRLNSGIQEHGCRVLRNLADNCEFNSALEAENGAVYA
GSLAMMGFPDNASIQEQASAMLLNITLNAVSLEKVARGDVARLAEKALAM
HPKHRGVQLQAGSLWDRLVEYEEGNFSNDTRRGSEHNSGRSGFSIFGKRR
SKHN*

spliced messenger RNA

>Gchil6919.t1 ID=Gchil6919.t1|Name=Gchil6919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00004376_pilon:690707..692521+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACAGAAGACAACTCTCCGAAAAATGTAGGTGGCTTCGAAGAATC
AAAAAGGGAAAAGAGTGTCTTGGAACCCACGGGAACGGAGAAGAAGGCAA
TGAATGATGTGAATGAGCTTGAAGAAAAGAAAAAACGTTTAGTCAAAGAA
GCCAGAAAGAATGTGACAGAACTTCTTGAGGCAGTTGAAAAAGACAAAGC
TGCAACCCCTGACGATCACAGCTACACCTTCTCTCAGAATCCTCTAAAGG
TCTTTTCCTCGGCCGACGTCGTTACTGTTGACAAATTCGTTATGTCGGGT
GGAATTCGTTCCATTTCAATGGCAATGAAGAAGCACGCATCATCAAGTGC
TGTGGTCAGCTCCGCAACGAAAACTTTAGTTGCAATGATGTTCTATGATC
CCTCCATCACAGAAAATGCTCTCAAAGCCGGGGTTATCGAAAGTTTAATT
ACGGCATTATTCGCTCAAGTCGATGCAGATAATGAAGAAGCTAAAGTATT
CACCTTAAAAGCCTTGCGTGGATTCACTCAAGATgaagaacgaaggaagg
aaatatacgaaggaaaaggactagaaggaaTTATCGCTATTATGAATAGA
AACACCGATAACCCCCGCGTTCTTTCTCACGCTGCACTGCTGCTTTCCAA
TCTGGCGTTTGGAAACCCGCAAATCAAAGACGCAACTGGGGCAATGGGCG
GTATTGCTGCGATCTGCAATGGAATGTTTACGCATTTGAATCATCAGGGA
ATGCAAGCCCGTGGCTCGCTTGCTCTTCGCAATCTTTCTTACAACTCAGA
ACTGAACCATAAAATTGCTGGAGAGAATGGCGCGGCGCAAGCCTTGATCA
AAACTATCCAACAATTCCCCAACGACCGTGAAGTCGCTCATCAATCTTGT
GTTGCTCTGGTGAACTTATCGAGCGCGAATGAAGAAAACCGAAAGCGAAT
TGTGAAGGCTGACGGAGCTCCACTTTTTGTCAAAATGATGCGAATGCATC
CCGATTCCGTGACTGTGAATGACGACTGTGTCTCAATCATTCGCAACATA
TCTGTTGGGAATCCCGAAGGTCAGGTTGAGCTTGGGAACTGCGGTGGAGT
TGCTGAAGTGTGTAAAGTGATGAGAAAGTTCGAGAAAAGGGCTCAACTGG
CGGTAAAAGCTTGTGCTGCCGTTCGATATTTATCTTTTCTTCCTGAAAAT
CGAGACAGAGTATGTTCAGAAGGTGGAATGGAAGCGGTGGTAAACATACT
CAAATTCCATTCAGCTGACCCAAAAATAGTGGAGCAAGCCTTGTTGGCTA
TTGGGAACGCCACTTTTCAACATGACGAAAACAAGACTAGAACCGGAAAA
TGCGGGGGAATAGTCGAAATCATCAAAGCCCTTGAGAAGCATCGTCTGAA
TTCTGGAATTCAAGAGCACGGGTGCAGAGTACTACGCAATTTAGCTGATA
ACTGCGAGTTCAACAGTGCTTTAGAAGCAGAGAATGGTGCAGTTTATGCA
GGATCCTTGGCAATGATGGGATTTCCCGACAACGCTTCTATCCAAGAACA
GGCATCGGCGATGCTATTGAACATTACGTTGAATGCAGTAAGCTTGGAAA
AAGTCGCGCGTGGGGATGTCGCGAGGCTCGCAGAAAAGGCCTTGGCGATG
CACCCAAAACACCGTGGGGTCCAACTGCAGGCTGGAAGCCTCTGGGATCG
TCTTGTTGAGTATGAAGAAGGTAACTTTAGTAATGATACCAGACGAGGTT
CGGAGCACAATTCTGGCCGCTCGGGCTTTTCTATCTTTGGAAAACGTCGT
AGCAAGCACAATTAA

protein sequence of Gchil6919.t1

>Gchil6919.t1 ID=Gchil6919.t1|Name=Gchil6919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=605bp
MSTEDNSPKNVGGFEESKREKSVLEPTGTEKKAMNDVNELEEKKKRLVKE
ARKNVTELLEAVEKDKAATPDDHSYTFSQNPLKVFSSADVVTVDKFVMSG
GIRSISMAMKKHASSSAVVSSATKTLVAMMFYDPSITENALKAGVIESLI
TALFAQVDADNEEAKVFTLKALRGFTQDEERRKEIYEGKGLEGIIAIMNR
NTDNPRVLSHAALLLSNLAFGNPQIKDATGAMGGIAAICNGMFTHLNHQG
MQARGSLALRNLSYNSELNHKIAGENGAAQALIKTIQQFPNDREVAHQSC
VALVNLSSANEENRKRIVKADGAPLFVKMMRMHPDSVTVNDDCVSIIRNI
SVGNPEGQVELGNCGGVAEVCKVMRKFEKRAQLAVKACAAVRYLSFLPEN
RDRVCSEGGMEAVVNILKFHSADPKIVEQALLAIGNATFQHDENKTRTGK
CGGIVEIIKALEKHRLNSGIQEHGCRVLRNLADNCEFNSALEAENGAVYA
GSLAMMGFPDNASIQEQASAMLLNITLNAVSLEKVARGDVARLAEKALAM
HPKHRGVQLQAGSLWDRLVEYEEGNFSNDTRRGSEHNSGRSGFSIFGKRR
SKHN*

mRNA from alignment at tig00004376_pilon:690707..692521+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6919.t1 ID=Gchil6919.t1|Name=Gchil6919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00004376_pilon:690707..692521+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACAGAAGACAACTCTCCGAAAAATGTAGGTGGCTTCGAAGAATC
AAAAAGGGAAAAGAGTGTCTTGGAACCCACGGGAACGGAGAAGAAGGCAA
TGAATGATGTGAATGAGCTTGAAGAAAAGAAAAAACGTTTAGTCAAAGAA
GCCAGAAAGAATGTGACAGAACTTCTTGAGGCAGTTGAAAAAGACAAAGC
TGCAACCCCTGACGATCACAGCTACACCTTCTCTCAGAATCCTCTAAAGG
TCTTTTCCTCGGCCGACGTCGTTACTGTTGACAAATTCGTTATGTCGGGT
GGAATTCGTTCCATTTCAATGGCAATGAAGAAGCACGCATCATCAAGTGC
TGTGGTCAGCTCCGCAACGAAAACTTTAGTTGCAATGATGTTCTATGATC
CCTCCATCACAGAAAATGCTCTCAAAGCCGGGGTTATCGAAAGTTTAATT
ACGGCATTATTCGCTCAAGTCGATGCAGATAATGAAGAAGCTAAAGTATT
CACCTTAAAAGCCTTGCGTGGATTCACTCAAGATgaagaacgaaggaagg
aaatatacgaaggaaaaggactagaaggaaTTATCGCTATTATGAATAGA
AACACCGATAACCCCCGCGTTCTTTCTCACGCTGCACTGCTGCTTTCCAA
TCTGGCGTTTGGAAACCCGCAAATCAAAGACGCAACTGGGGCAATGGGCG
GTATTGCTGCGATCTGCAATGGAATGTTTACGCATTTGAATCATCAGGGA
ATGCAAGCCCGTGGCTCGCTTGCTCTTCGCAATCTTTCTTACAACTCAGA
ACTGAACCATAAAATTGCTGGAGAGAATGGCGCGGCGCAAGCCTTGATCA
AAACTATCCAACAATTCCCCAACGACCGTGAAGTCGCTCATCAATCTTGT
GTTGCTCTGGTGAACTTATCGAGCGCGAATGAAGAAAACCGAAAGCGAAT
TGTGAAGGCTGACGGAGCTCCACTTTTTGTCAAAATGATGCGAATGCATC
CCGATTCCGTGACTGTGAATGACGACTGTGTCTCAATCATTCGCAACATA
TCTGTTGGGAATCCCGAAGGTCAGGTTGAGCTTGGGAACTGCGGTGGAGT
TGCTGAAGTGTGTAAAGTGATGAGAAAGTTCGAGAAAAGGGCTCAACTGG
CGGTAAAAGCTTGTGCTGCCGTTCGATATTTATCTTTTCTTCCTGAAAAT
CGAGACAGAGTATGTTCAGAAGGTGGAATGGAAGCGGTGGTAAACATACT
CAAATTCCATTCAGCTGACCCAAAAATAGTGGAGCAAGCCTTGTTGGCTA
TTGGGAACGCCACTTTTCAACATGACGAAAACAAGACTAGAACCGGAAAA
TGCGGGGGAATAGTCGAAATCATCAAAGCCCTTGAGAAGCATCGTCTGAA
TTCTGGAATTCAAGAGCACGGGTGCAGAGTACTACGCAATTTAGCTGATA
ACTGCGAGTTCAACAGTGCTTTAGAAGCAGAGAATGGTGCAGTTTATGCA
GGATCCTTGGCAATGATGGGATTTCCCGACAACGCTTCTATCCAAGAACA
GGCATCGGCGATGCTATTGAACATTACGTTGAATGCAGTAAGCTTGGAAA
AAGTCGCGCGTGGGGATGTCGCGAGGCTCGCAGAAAAGGCCTTGGCGATG
CACCCAAAACACCGTGGGGTCCAACTGCAGGCTGGAAGCCTCTGGGATCG
TCTTGTTGAGTATGAAGAAGGTAACTTTAGTAATGATACCAGACGAGGTT
CGGAGCACAATTCTGGCCGCTCGGGCTTTTCTATCTTTGGAAAACGTCGT
AGCAAGCACAATTAA

Coding sequence (CDS) from alignment at tig00004376_pilon:690707..692521+

>Gchil6919.t1 ID=Gchil6919.t1|Name=Gchil6919.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00004376_pilon:690707..692521+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGACAGAAGACAACTCTCCGAAAAATGTAGGTGGCTTCGAAGAATC
AAAAAGGGAAAAGAGTGTCTTGGAACCCACGGGAACGGAGAAGAAGGCAA
TGAATGATGTGAATGAGCTTGAAGAAAAGAAAAAACGTTTAGTCAAAGAA
GCCAGAAAGAATGTGACAGAACTTCTTGAGGCAGTTGAAAAAGACAAAGC
TGCAACCCCTGACGATCACAGCTACACCTTCTCTCAGAATCCTCTAAAGG
TCTTTTCCTCGGCCGACGTCGTTACTGTTGACAAATTCGTTATGTCGGGT
GGAATTCGTTCCATTTCAATGGCAATGAAGAAGCACGCATCATCAAGTGC
TGTGGTCAGCTCCGCAACGAAAACTTTAGTTGCAATGATGTTCTATGATC
CCTCCATCACAGAAAATGCTCTCAAAGCCGGGGTTATCGAAAGTTTAATT
ACGGCATTATTCGCTCAAGTCGATGCAGATAATGAAGAAGCTAAAGTATT
CACCTTAAAAGCCTTGCGTGGATTCACTCAAGATgaagaacgaaggaagg
aaatatacgaaggaaaaggactagaaggaaTTATCGCTATTATGAATAGA
AACACCGATAACCCCCGCGTTCTTTCTCACGCTGCACTGCTGCTTTCCAA
TCTGGCGTTTGGAAACCCGCAAATCAAAGACGCAACTGGGGCAATGGGCG
GTATTGCTGCGATCTGCAATGGAATGTTTACGCATTTGAATCATCAGGGA
ATGCAAGCCCGTGGCTCGCTTGCTCTTCGCAATCTTTCTTACAACTCAGA
ACTGAACCATAAAATTGCTGGAGAGAATGGCGCGGCGCAAGCCTTGATCA
AAACTATCCAACAATTCCCCAACGACCGTGAAGTCGCTCATCAATCTTGT
GTTGCTCTGGTGAACTTATCGAGCGCGAATGAAGAAAACCGAAAGCGAAT
TGTGAAGGCTGACGGAGCTCCACTTTTTGTCAAAATGATGCGAATGCATC
CCGATTCCGTGACTGTGAATGACGACTGTGTCTCAATCATTCGCAACATA
TCTGTTGGGAATCCCGAAGGTCAGGTTGAGCTTGGGAACTGCGGTGGAGT
TGCTGAAGTGTGTAAAGTGATGAGAAAGTTCGAGAAAAGGGCTCAACTGG
CGGTAAAAGCTTGTGCTGCCGTTCGATATTTATCTTTTCTTCCTGAAAAT
CGAGACAGAGTATGTTCAGAAGGTGGAATGGAAGCGGTGGTAAACATACT
CAAATTCCATTCAGCTGACCCAAAAATAGTGGAGCAAGCCTTGTTGGCTA
TTGGGAACGCCACTTTTCAACATGACGAAAACAAGACTAGAACCGGAAAA
TGCGGGGGAATAGTCGAAATCATCAAAGCCCTTGAGAAGCATCGTCTGAA
TTCTGGAATTCAAGAGCACGGGTGCAGAGTACTACGCAATTTAGCTGATA
ACTGCGAGTTCAACAGTGCTTTAGAAGCAGAGAATGGTGCAGTTTATGCA
GGATCCTTGGCAATGATGGGATTTCCCGACAACGCTTCTATCCAAGAACA
GGCATCGGCGATGCTATTGAACATTACGTTGAATGCAGTAAGCTTGGAAA
AAGTCGCGCGTGGGGATGTCGCGAGGCTCGCAGAAAAGGCCTTGGCGATG
CACCCAAAACACCGTGGGGTCCAACTGCAGGCTGGAAGCCTCTGGGATCG
TCTTGTTGAGTATGAAGAAGGTAACTTTAGTAATGATACCAGACGAGGTT
CGGAGCACAATTCTGGCCGCTCGGGCTTTTCTATCTTTGGAAAACGTCGT
AGCAAGCACAATTAA