Gchil6913.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6913.t1
Unique NameGchil6913.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:678032..679282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr38445
PFAMsZip
Max annot lvl2836|Bacillariophyta
KEGG koko:K07238
KEGG TC2.A.5.5
Evalue1.43e-68
EggNOG OGsCOG0428@1|root,KOG2474@2759|Eukaryota,2XC0Z@2836|Bacillariophyta
DescriptionZIP Zinc transporter
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6913Gchil6913Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 678032..679282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6913.t1Gchil6913.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 678032..679282 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6913.t1.start1Gchil6913.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 678032..678034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6913.t1.CDS1Gchil6913.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 678032..678279 +
Gchil6913.t1.CDS2Gchil6913.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 678352..678778 +
Gchil6913.t1.CDS3Gchil6913.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 678875..679282 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6913.t1.exon1Gchil6913.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 678032..678279 +
Gchil6913.t1.exon2Gchil6913.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 678352..678778 +
Gchil6913.t1.exon3Gchil6913.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 678875..679282 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6913.t1.intron1Gchil6913.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 678280..678351 +
Gchil6913.t1.intron2Gchil6913.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 678779..678874 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6913.t1.stop1Gchil6913.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 679280..679282 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6913.t1 ID=Gchil6913.t1|Name=Gchil6913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=361bp
MSTCVAETQNGNVGLAFGIVTAAGLSTSLGAAVAFFMPYKRDSKNLFLAG
CLSIAAGVMVYVSFMEIFATKAIDYFAKCVEENLAYLYATLCFFGGILIT
YLFDMSLHLFEDWISQRKHASLEKKQAIQRNSDIKDTQSSSQESLPPVTQ
PVSNVLQGDDQESSDIVLPVFQEPSLSEPRDEHVKIDPHVGHDGHMVADM
YQAHSHDPKALIRMGIFAGIALAFHNFPEGLATFVAVLTEPSIGISVAIA
IGIHNIPEGICVAMPIYYATGSRYKAFMWATLSGMTELLGAFLGWVVLRK
VITPLVYGILFGIVAGMMIYISIKELLPTAHRYDPDDKVTTYSFIAGMLL
MAISLVLFMF*
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spliced messenger RNA

>Gchil6913.t1 ID=Gchil6913.t1|Name=Gchil6913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004376_pilon:678032..679282+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACGTGCGTTGCAGAAACCCAAAACGGAAATGTCGGGCTCGCATT
TGGAATTGTCACGGCCGCTGGCTTGAGCACCTCACTCGGAGCTGCTGTAG
CATTTTTCATGCCGTACAAACGCGACTCGAAGAACCTATTTCTCGCAGGA
TGTCTCTCGATCGCGGCAGGAGTCATGGTATATGTCTCCTTCATGGAGAT
CTTTGCCACTAAGGCCATCGATTACTTTGCAAAATGTGTCGAAGAAAACC
TCGCTTACCTTTACGCGACTTTGTGCTTCTTTGGTGGAATCCTCATAACG
TATTTGTTTGATATGTCCCTGCATCTCTTCGAAGACTGGATATCACAGCG
AAAACATGCTAGCCTCGAAAAGAAACAAGCTATTCAACGCAACAGCGATA
TCAAAGATACGCAATCCTCATCTCAAGAATCACTTCCTCCAGTTACTCAA
CCCGTATCCAATGTCCTTCAGGGCGACGATCAAGAAAGTTCAGACATTGT
TTTGCCCGTTTTTCAAGAACCCAGTCTGAGCGAACCGCGCGATGAACATG
TTAAGATTGATCCTCACGTTGGTCACGATGGTCACATGGTGGCAGATATG
TATCAAGCTCATTCTCATGATCCAAAAGCCTTGATACGGATGGGCATTTT
TGCTGGTATTGCCCTTGCGTTTCATAATTTCCCAGAGGGCCTTGCTACCT
TTGTCGCCGTTCTGACAGAACCATCCATCGGAATAAGCGTAGCCATTGCG
ATTGGCATCCATAACATTCCAGAGGGAATATGCGTCGCCATGCCGATTTA
TTACGCAACCGGATCCCGGTATAAAGCGTTCATGTGGGCAACGCTGTCTG
GTATGACTGAGCTTCTTGGTGCGTTCCTTGGGTGGGTCGTTTTACGAAAA
GTCATTACTCCATTGGTGTACGGAATTCTGTTCGGAATTGTAGCCGGTAT
GATGATTTACATATCCATTAAGGAATTACTCCCAACTGCTCATCGCTATG
ACCCAGATGACAAAGTCACAACTTACTCCTTCATAGCCGGGATGTTACTC
ATGGCTATTTCTCTCGTGTTGTTCATGTTCTAA
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protein sequence of Gchil6913.t1

>Gchil6913.t1 ID=Gchil6913.t1|Name=Gchil6913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=361bp
MSTCVAETQNGNVGLAFGIVTAAGLSTSLGAAVAFFMPYKRDSKNLFLAG
CLSIAAGVMVYVSFMEIFATKAIDYFAKCVEENLAYLYATLCFFGGILIT
YLFDMSLHLFEDWISQRKHASLEKKQAIQRNSDIKDTQSSSQESLPPVTQ
PVSNVLQGDDQESSDIVLPVFQEPSLSEPRDEHVKIDPHVGHDGHMVADM
YQAHSHDPKALIRMGIFAGIALAFHNFPEGLATFVAVLTEPSIGISVAIA
IGIHNIPEGICVAMPIYYATGSRYKAFMWATLSGMTELLGAFLGWVVLRK
VITPLVYGILFGIVAGMMIYISIKELLPTAHRYDPDDKVTTYSFIAGMLL
MAISLVLFMF*
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mRNA from alignment at tig00004376_pilon:678032..679282+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6913.t1 ID=Gchil6913.t1|Name=Gchil6913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00004376_pilon:678032..679282+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAACGTGCGTTGCAGAAACCCAAAACGGAAATGTCGGGCTCGCATT
TGGAATTGTCACGGCCGCTGGCTTGAGCACCTCACTCGGAGCTGCTGTAG
CATTTTTCATGCCGTACAAACGCGACTCGAAGAACCTATTTCTCGCAGGA
TGTCTCTCGATCGCGGCAGGAGTCATGGTATATGTCTCCTTCATGGAGAT
CTTTGCCACTAAGGCCATCGATTACTTTGCAAAATGTGTCGAAGAAAAGT
AAGGTATCCTAATGTTTCACGATCCCATTTGCGTTTTCCTGTTCTAATCT
CACTCGCTCTTCTCGGCCAGCCTCGCTTACCTTTACGCGACTTTGTGCTT
CTTTGGTGGAATCCTCATAACGTATTTGTTTGATATGTCCCTGCATCTCT
TCGAAGACTGGATATCACAGCGAAAACATGCTAGCCTCGAAAAGAAACAA
GCTATTCAACGCAACAGCGATATCAAAGATACGCAATCCTCATCTCAAGA
ATCACTTCCTCCAGTTACTCAACCCGTATCCAATGTCCTTCAGGGCGACG
ATCAAGAAAGTTCAGACATTGTTTTGCCCGTTTTTCAAGAACCCAGTCTG
AGCGAACCGCGCGATGAACATGTTAAGATTGATCCTCACGTTGGTCACGA
TGGTCACATGGTGGCAGATATGTATCAAGCTCATTCTCATGATCCAAAAG
CCTTGATACGGATGGGCATTTTTGCTGGTATTGCCCTTGCGTTTCATGTA
AGATTTTCTCTCCATCCATGTTTTATGCATTAGCTTTCTAACGAGCCCCA
CTTCTACTGTCTTTTATAACGACTTGCATTCGAATCATATCAGAATTTCC
CAGAGGGCCTTGCTACCTTTGTCGCCGTTCTGACAGAACCATCCATCGGA
ATAAGCGTAGCCATTGCGATTGGCATCCATAACATTCCAGAGGGAATATG
CGTCGCCATGCCGATTTATTACGCAACCGGATCCCGGTATAAAGCGTTCA
TGTGGGCAACGCTGTCTGGTATGACTGAGCTTCTTGGTGCGTTCCTTGGG
TGGGTCGTTTTACGAAAAGTCATTACTCCATTGGTGTACGGAATTCTGTT
CGGAATTGTAGCCGGTATGATGATTTACATATCCATTAAGGAATTACTCC
CAACTGCTCATCGCTATGACCCAGATGACAAAGTCACAACTTACTCCTTC
ATAGCCGGGATGTTACTCATGGCTATTTCTCTCGTGTTGTTCATGTTCTA
A
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Coding sequence (CDS) from alignment at tig00004376_pilon:678032..679282+

>Gchil6913.t1 ID=Gchil6913.t1|Name=Gchil6913.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00004376_pilon:678032..679282+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAACGTGCGTTGCAGAAACCCAAAACGGAAATGTCGGGCTCGCATT
TGGAATTGTCACGGCCGCTGGCTTGAGCACCTCACTCGGAGCTGCTGTAG
CATTTTTCATGCCGTACAAACGCGACTCGAAGAACCTATTTCTCGCAGGA
TGTCTCTCGATCGCGGCAGGAGTCATGGTATATGTCTCCTTCATGGAGAT
CTTTGCCACTAAGGCCATCGATTACTTTGCAAAATGTGTCGAAGAAAACC
TCGCTTACCTTTACGCGACTTTGTGCTTCTTTGGTGGAATCCTCATAACG
TATTTGTTTGATATGTCCCTGCATCTCTTCGAAGACTGGATATCACAGCG
AAAACATGCTAGCCTCGAAAAGAAACAAGCTATTCAACGCAACAGCGATA
TCAAAGATACGCAATCCTCATCTCAAGAATCACTTCCTCCAGTTACTCAA
CCCGTATCCAATGTCCTTCAGGGCGACGATCAAGAAAGTTCAGACATTGT
TTTGCCCGTTTTTCAAGAACCCAGTCTGAGCGAACCGCGCGATGAACATG
TTAAGATTGATCCTCACGTTGGTCACGATGGTCACATGGTGGCAGATATG
TATCAAGCTCATTCTCATGATCCAAAAGCCTTGATACGGATGGGCATTTT
TGCTGGTATTGCCCTTGCGTTTCATAATTTCCCAGAGGGCCTTGCTACCT
TTGTCGCCGTTCTGACAGAACCATCCATCGGAATAAGCGTAGCCATTGCG
ATTGGCATCCATAACATTCCAGAGGGAATATGCGTCGCCATGCCGATTTA
TTACGCAACCGGATCCCGGTATAAAGCGTTCATGTGGGCAACGCTGTCTG
GTATGACTGAGCTTCTTGGTGCGTTCCTTGGGTGGGTCGTTTTACGAAAA
GTCATTACTCCATTGGTGTACGGAATTCTGTTCGGAATTGTAGCCGGTAT
GATGATTTACATATCCATTAAGGAATTACTCCCAACTGCTCATCGCTATG
ACCCAGATGACAAAGTCACAACTTACTCCTTCATAGCCGGGATGTTACTC
ATGGCTATTTCTCTCGTGTTGTTCATGTTCTAA
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