Gchil691.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil691.t1
Unique Name	Gchil691.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004431_pilon	contig	tig00004431_pilon:144254..145351 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	84751.XP_007881768.1
Max annot lvl	4751\|Fungi
Evalue	1.47e-06
EggNOG OGs	29WD9@1\|root,2RXPA@2759\|Eukaryota,39UZ9@33154\|Opisthokonta,3NW7I@4751\|Fungi,3V1B1@5204\|Basidiomycota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil691	Gchil691	Gracilaria chilensis NLEC103_M9 male	gene	tig00004431_pilon 144254..145351 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil691.t1.start1	Gchil691.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004431_pilon 144254..144256 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil691.t1.CDS1	Gchil691.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004431_pilon 144254..145351 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil691.t1.exon1	Gchil691.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004431_pilon 144254..145351 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil691.t1.stop1	Gchil691.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004431_pilon 145349..145351 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil691.t1	Gchil691.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004431_pilon 144254..145351 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004431_pilon:144254..145351+
coding sequence from alignment at tig00004431_pilon:144254..145351+

mRNA sequence

>Gchil691.t1 ID=Gchil691.t1|Name=Gchil691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MSSCTPDTSSTLSSQGHRGGDLDSTQRKLLFHHENVVQAFDGYDTLYRDA
ILKAKASARTAKRAAETADRLREAESSLKEYLGKLSKQHMRRMLLPRSMR
SKVDKTETELRSVAQESVEAERAASLAQKKALADMNSCMRLREDARKLRD
SERTRREILDGLFDGLHIGSPLENEVESERDALVHATNRKKDLLTAQRQA
YQLLASALVDVKRARKEMWDARITNTVDIFNGGGVGFIAGVQSRMRFNTA
TEKSKEAATKIAHAVALSPQLSVRKLIKAKSIEKMSNMTDIFFDGFMTDL
LARMAIDKAEEALENLEEECGASIAMQKKIVAQAREDYAACSGELEKVSK
ELVRIRVDLIHEVLV*

spliced messenger RNA

>Gchil691.t1 ID=Gchil691.t1|Name=Gchil691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004431_pilon:144254..145351+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCTTGTACACCTGATACTTCGTCGACTCTTTCCTCGCAAGGACA
CCGGGGTGGCGATCTTGACTCGACCCAAAGAAAGCTCCTTTTCCATCACG
AAAATGTGGTACAAGCGTTTGACGGCTACGATACGCTGTATCGTGATGCA
ATCTTGAAAGCAAAAGCTTCCGCAAGAACCGCAAAACGTGCCGCCGAGAC
GGCTGACAGGTTGCGGGAAGCGGAGAGCTCTTTGAAGGAATATCTGGGTA
AGTTGAGTAAGCAACACATGCGAAGAATGCTACTACCTCGTTCCATGCGA
TCAAAGGTGGATAAGACGGAAACAGAACTGAGATCTGTGGCTCAAGAGTC
TGTTGAGGCTGAGAGAGCCGCAAGCCTCGCTCAAAAAAAGGCTTTGGCGG
ACATGAATTCATGCATGCGCTTGCGAGAAGATGCCCGAAAGCTTCGCGAC
TCCGAGCGCACCAGGCGCGAAATTCTTGATGGATTGTTTGATGGGTTGCA
CATTGGGTCGCCACTGGAAAACGAAGTTGAGTCTGAGCGGGACGCATTGG
TGCATGCTACGAACCGCAAGAAAGATTTGCTGACTGCTCAACGCCAGGCG
TATCAACTGCTTGCATCAGCGCTTGTAGATGTAAAACGAGCGAGGAAGGA
AATGTGGGACGCTAGGATAACAAACACGGTCGACATTTTTAATGGTGGTG
GTGTGGGTTTCATCGCTGGCGTACAGAGCCGCATGAGATTCAACACTGCC
ACGGAGAAGTCTAAGGAGGCAGCCACAAAGATTGCACATGCTGTGGCGTT
GAGTCCGCAACTCTCTGTGAGAAAGTTAATTAAAGCCAAATCTATAGAGA
AGATGTCGAATATGACGGACATATTCTTCGACGGATTTATGACGGACTTG
CTGGCGCGAATGGCTATCGATAAAGCCGAAGAGGCTCTGGAAAATCTTGA
GGAGGAATGCGGAGCCAGCATCGCGATGCAGAAGAAGATAGTGGCTCAGG
CGCGTGAGGATTATGCAGCTTGCTCAGGAGAACTAGAAAAGGTATCAAAG
GAACTAGTTCGAATTCGTGTAGACTTGATACATGAGGTTCTTGTTTGA

protein sequence of Gchil691.t1

>Gchil691.t1 ID=Gchil691.t1|Name=Gchil691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MSSCTPDTSSTLSSQGHRGGDLDSTQRKLLFHHENVVQAFDGYDTLYRDA
ILKAKASARTAKRAAETADRLREAESSLKEYLGKLSKQHMRRMLLPRSMR
SKVDKTETELRSVAQESVEAERAASLAQKKALADMNSCMRLREDARKLRD
SERTRREILDGLFDGLHIGSPLENEVESERDALVHATNRKKDLLTAQRQA
YQLLASALVDVKRARKEMWDARITNTVDIFNGGGVGFIAGVQSRMRFNTA
TEKSKEAATKIAHAVALSPQLSVRKLIKAKSIEKMSNMTDIFFDGFMTDL
LARMAIDKAEEALENLEEECGASIAMQKKIVAQAREDYAACSGELEKVSK
ELVRIRVDLIHEVLV*

mRNA from alignment at tig00004431_pilon:144254..145351+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil691.t1 ID=Gchil691.t1|Name=Gchil691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004431_pilon:144254..145351+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTTGTACACCTGATACTTCGTCGACTCTTTCCTCGCAAGGACA
CCGGGGTGGCGATCTTGACTCGACCCAAAGAAAGCTCCTTTTCCATCACG
AAAATGTGGTACAAGCGTTTGACGGCTACGATACGCTGTATCGTGATGCA
ATCTTGAAAGCAAAAGCTTCCGCAAGAACCGCAAAACGTGCCGCCGAGAC
GGCTGACAGGTTGCGGGAAGCGGAGAGCTCTTTGAAGGAATATCTGGGTA
AGTTGAGTAAGCAACACATGCGAAGAATGCTACTACCTCGTTCCATGCGA
TCAAAGGTGGATAAGACGGAAACAGAACTGAGATCTGTGGCTCAAGAGTC
TGTTGAGGCTGAGAGAGCCGCAAGCCTCGCTCAAAAAAAGGCTTTGGCGG
ACATGAATTCATGCATGCGCTTGCGAGAAGATGCCCGAAAGCTTCGCGAC
TCCGAGCGCACCAGGCGCGAAATTCTTGATGGATTGTTTGATGGGTTGCA
CATTGGGTCGCCACTGGAAAACGAAGTTGAGTCTGAGCGGGACGCATTGG
TGCATGCTACGAACCGCAAGAAAGATTTGCTGACTGCTCAACGCCAGGCG
TATCAACTGCTTGCATCAGCGCTTGTAGATGTAAAACGAGCGAGGAAGGA
AATGTGGGACGCTAGGATAACAAACACGGTCGACATTTTTAATGGTGGTG
GTGTGGGTTTCATCGCTGGCGTACAGAGCCGCATGAGATTCAACACTGCC
ACGGAGAAGTCTAAGGAGGCAGCCACAAAGATTGCACATGCTGTGGCGTT
GAGTCCGCAACTCTCTGTGAGAAAGTTAATTAAAGCCAAATCTATAGAGA
AGATGTCGAATATGACGGACATATTCTTCGACGGATTTATGACGGACTTG
CTGGCGCGAATGGCTATCGATAAAGCCGAAGAGGCTCTGGAAAATCTTGA
GGAGGAATGCGGAGCCAGCATCGCGATGCAGAAGAAGATAGTGGCTCAGG
CGCGTGAGGATTATGCAGCTTGCTCAGGAGAACTAGAAAAGGTATCAAAG
GAACTAGTTCGAATTCGTGTAGACTTGATACATGAGGTTCTTGTTTGA

Coding sequence (CDS) from alignment at tig00004431_pilon:144254..145351+

>Gchil691.t1 ID=Gchil691.t1|Name=Gchil691.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00004431_pilon:144254..145351+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCTTGTACACCTGATACTTCGTCGACTCTTTCCTCGCAAGGACA
CCGGGGTGGCGATCTTGACTCGACCCAAAGAAAGCTCCTTTTCCATCACG
AAAATGTGGTACAAGCGTTTGACGGCTACGATACGCTGTATCGTGATGCA
ATCTTGAAAGCAAAAGCTTCCGCAAGAACCGCAAAACGTGCCGCCGAGAC
GGCTGACAGGTTGCGGGAAGCGGAGAGCTCTTTGAAGGAATATCTGGGTA
AGTTGAGTAAGCAACACATGCGAAGAATGCTACTACCTCGTTCCATGCGA
TCAAAGGTGGATAAGACGGAAACAGAACTGAGATCTGTGGCTCAAGAGTC
TGTTGAGGCTGAGAGAGCCGCAAGCCTCGCTCAAAAAAAGGCTTTGGCGG
ACATGAATTCATGCATGCGCTTGCGAGAAGATGCCCGAAAGCTTCGCGAC
TCCGAGCGCACCAGGCGCGAAATTCTTGATGGATTGTTTGATGGGTTGCA
CATTGGGTCGCCACTGGAAAACGAAGTTGAGTCTGAGCGGGACGCATTGG
TGCATGCTACGAACCGCAAGAAAGATTTGCTGACTGCTCAACGCCAGGCG
TATCAACTGCTTGCATCAGCGCTTGTAGATGTAAAACGAGCGAGGAAGGA
AATGTGGGACGCTAGGATAACAAACACGGTCGACATTTTTAATGGTGGTG
GTGTGGGTTTCATCGCTGGCGTACAGAGCCGCATGAGATTCAACACTGCC
ACGGAGAAGTCTAAGGAGGCAGCCACAAAGATTGCACATGCTGTGGCGTT
GAGTCCGCAACTCTCTGTGAGAAAGTTAATTAAAGCCAAATCTATAGAGA
AGATGTCGAATATGACGGACATATTCTTCGACGGATTTATGACGGACTTG
CTGGCGCGAATGGCTATCGATAAAGCCGAAGAGGCTCTGGAAAATCTTGA
GGAGGAATGCGGAGCCAGCATCGCGATGCAGAAGAAGATAGTGGCTCAGG
CGCGTGAGGATTATGCAGCTTGCTCAGGAGAACTAGAAAAGGTATCAAAG
GAACTAGTTCGAATTCGTGTAGACTTGATACATGAGGTTCTTGTTTGA