Gchil6895.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6895.t1
Unique NameGchil6895.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:616340..617158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704843.1
Preferred nameVMA8
PFAMsATP-synt_D
Max annot lvl2759|Eukaryota
KEGG koko:K02149
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0071944,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
Evalue6.88e-73
EggNOG OGsCOG1394@1|root,KOG1647@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6895Gchil6895Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 616340..617158 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6895.t1.start1Gchil6895.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 616340..616342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6895.t1.CDS1Gchil6895.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 616340..617158 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6895.t1.exon1Gchil6895.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 616340..617158 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6895.t1.stop1Gchil6895.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 617156..617158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6895.t1Gchil6895.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 616340..617158 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6895.t1 ID=Gchil6895.t1|Name=Gchil6895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=273bp
MSSKQRLTVVPSRMALQQVKAKLSGAKKGHSMLKKKSDALLVRFRAILSD
ILRNKEAAGEESREAMLALALAKYAFGDELKHIVIENVDDASMKVKMAPD
NVAGVTIPIFSKVGAKVAEAEGKDLAGKGTASLAGLSKGGQRIGEARGAF
ADTLDLLVKLASLQTSFIILDEAIKLTNRRVNALENVIKPKLENTISYVL
SELDEMEREEFFRLKLIQNKKERERVLKEGKELEERRKTALTGFDDGVFA
DGNAAIPSILDTHTGTDPDNLF*
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spliced messenger RNA

>Gchil6895.t1 ID=Gchil6895.t1|Name=Gchil6895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00004376_pilon:616340..617158+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTAAGCAGCGCCTCACCGTCGTGCCGTCTCGAATGGCCTTGCA
GCAGGTCAAAGCAAAGCTGTCAGGTGCCAAGAAGGGACACTCCATGCTCA
AGAAGAAATCCGATGCGTTGCTCGTGCGCTTCCGCGCAATTCTTTCTGAT
ATCTTGCGGAACAAGGAGGCTGCAGGAGAGGAGTCCCGGGAGGCTATGCT
TGCCCTCGCACTCGCCAAGTACGCCTTCGGAGACGAGTTGAAACATATTG
TCATCGAGAATGTCGACGATGCTTCGATGAAGGTCAAGATGGCTCCTGAT
AATGTAGCTGGTGTCACTATTCCCATTTTCTCCAAAGTTGGTGCCAAGGT
TGCCGAGGCCGAAGGAAAAGATCTCGCAGGAAAGGGAACCGCAAGCCTTG
CCGGTCTTTCCAAGGGAGGCCAACGAATTGGGGAAGCCAGGGGCGCCTTT
GCAGATACCCTTGACTTGTTAGTGAAGCTTGCTTCCCTACAGACCTCCTT
CATTATCTTAGACGAAGCTATCAAGCTCACCAACAGGAGAGTTAACGCCC
TAGAAAATGTCATCAAGCCCAAATTGGAAAACACCATTTCGTATGTGTTG
TCCGAACTCGATGAGATGGAAAGAGAAGAGTTTTTCCGACTCAAGCTCAT
TCAAAACAAGAAGGAAAGAGAAAGGGTTCTGAAGGAAGGAAAGGAGCTTG
AAGAGCGAAGAAAAACCGCTCTGACTGGATTTGATGACGGTGTGTTCGCC
GATGGTAATGCCGCAATCCCGTCTATTCTTGATACCCACACTGGTACTGA
TCCGGACAATCTGTTCTAA
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protein sequence of Gchil6895.t1

>Gchil6895.t1 ID=Gchil6895.t1|Name=Gchil6895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=273bp
MSSKQRLTVVPSRMALQQVKAKLSGAKKGHSMLKKKSDALLVRFRAILSD
ILRNKEAAGEESREAMLALALAKYAFGDELKHIVIENVDDASMKVKMAPD
NVAGVTIPIFSKVGAKVAEAEGKDLAGKGTASLAGLSKGGQRIGEARGAF
ADTLDLLVKLASLQTSFIILDEAIKLTNRRVNALENVIKPKLENTISYVL
SELDEMEREEFFRLKLIQNKKERERVLKEGKELEERRKTALTGFDDGVFA
DGNAAIPSILDTHTGTDPDNLF*
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mRNA from alignment at tig00004376_pilon:616340..617158+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6895.t1 ID=Gchil6895.t1|Name=Gchil6895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00004376_pilon:616340..617158+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTAAGCAGCGCCTCACCGTCGTGCCGTCTCGAATGGCCTTGCA
GCAGGTCAAAGCAAAGCTGTCAGGTGCCAAGAAGGGACACTCCATGCTCA
AGAAGAAATCCGATGCGTTGCTCGTGCGCTTCCGCGCAATTCTTTCTGAT
ATCTTGCGGAACAAGGAGGCTGCAGGAGAGGAGTCCCGGGAGGCTATGCT
TGCCCTCGCACTCGCCAAGTACGCCTTCGGAGACGAGTTGAAACATATTG
TCATCGAGAATGTCGACGATGCTTCGATGAAGGTCAAGATGGCTCCTGAT
AATGTAGCTGGTGTCACTATTCCCATTTTCTCCAAAGTTGGTGCCAAGGT
TGCCGAGGCCGAAGGAAAAGATCTCGCAGGAAAGGGAACCGCAAGCCTTG
CCGGTCTTTCCAAGGGAGGCCAACGAATTGGGGAAGCCAGGGGCGCCTTT
GCAGATACCCTTGACTTGTTAGTGAAGCTTGCTTCCCTACAGACCTCCTT
CATTATCTTAGACGAAGCTATCAAGCTCACCAACAGGAGAGTTAACGCCC
TAGAAAATGTCATCAAGCCCAAATTGGAAAACACCATTTCGTATGTGTTG
TCCGAACTCGATGAGATGGAAAGAGAAGAGTTTTTCCGACTCAAGCTCAT
TCAAAACAAGAAGGAAAGAGAAAGGGTTCTGAAGGAAGGAAAGGAGCTTG
AAGAGCGAAGAAAAACCGCTCTGACTGGATTTGATGACGGTGTGTTCGCC
GATGGTAATGCCGCAATCCCGTCTATTCTTGATACCCACACTGGTACTGA
TCCGGACAATCTGTTCTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:616340..617158+

>Gchil6895.t1 ID=Gchil6895.t1|Name=Gchil6895.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00004376_pilon:616340..617158+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTAAGCAGCGCCTCACCGTCGTGCCGTCTCGAATGGCCTTGCA
GCAGGTCAAAGCAAAGCTGTCAGGTGCCAAGAAGGGACACTCCATGCTCA
AGAAGAAATCCGATGCGTTGCTCGTGCGCTTCCGCGCAATTCTTTCTGAT
ATCTTGCGGAACAAGGAGGCTGCAGGAGAGGAGTCCCGGGAGGCTATGCT
TGCCCTCGCACTCGCCAAGTACGCCTTCGGAGACGAGTTGAAACATATTG
TCATCGAGAATGTCGACGATGCTTCGATGAAGGTCAAGATGGCTCCTGAT
AATGTAGCTGGTGTCACTATTCCCATTTTCTCCAAAGTTGGTGCCAAGGT
TGCCGAGGCCGAAGGAAAAGATCTCGCAGGAAAGGGAACCGCAAGCCTTG
CCGGTCTTTCCAAGGGAGGCCAACGAATTGGGGAAGCCAGGGGCGCCTTT
GCAGATACCCTTGACTTGTTAGTGAAGCTTGCTTCCCTACAGACCTCCTT
CATTATCTTAGACGAAGCTATCAAGCTCACCAACAGGAGAGTTAACGCCC
TAGAAAATGTCATCAAGCCCAAATTGGAAAACACCATTTCGTATGTGTTG
TCCGAACTCGATGAGATGGAAAGAGAAGAGTTTTTCCGACTCAAGCTCAT
TCAAAACAAGAAGGAAAGAGAAAGGGTTCTGAAGGAAGGAAAGGAGCTTG
AAGAGCGAAGAAAAACCGCTCTGACTGGATTTGATGACGGTGTGTTCGCC
GATGGTAATGCCGCAATCCCGTCTATTCTTGATACCCACACTGGTACTGA
TCCGGACAATCTGTTCTAA
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