Gchil6892.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6892.t1
Unique Name	Gchil6892.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:608938..610803 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6892	Gchil6892	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 608938..610803 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6892.t1.start1	Gchil6892.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 608938..608940 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6892.t1.CDS1	Gchil6892.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 608938..610803 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6892.t1.exon1	Gchil6892.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 608938..610803 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6892.t1.stop1	Gchil6892.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 610801..610803 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6892.t1	Gchil6892.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 608938..610803 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:608938..610803+
coding sequence from alignment at tig00004376_pilon:608938..610803+

mRNA sequence

>Gchil6892.t1 ID=Gchil6892.t1|Name=Gchil6892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=622bp
MDYNHQLDCCPSCSTPLTLFTPRERLQHANECLDSEHQKQATHEPSCAIC
SRNLNFLTPAARQEHVNRCLDVTLSPRPRQRRPVRKRPRSTSATSSRVPR
QELHRKKCDAKVVKLLTLLGLERYSQRFADEDIDLDTLRILKDEDFVALR
IPDAARRRIADALHAVPILDGLQTPTTTEPANEAHIVPTQKFATSKLGAA
LQREKSLFDDDDDDFEYRPTQTTPGSANEEPEKVPSAAALERVPNPRATA
AVPETIDLITPTKEDKTGPTAIQPTGQTSDSSDFDFENDMLLQSQISLET
KIEKWKEQQTRKEEMRHQDQMAKIESKYRSMIARLEGKIKSPAASPQSEP
IASIRRSDGTNHMEPTPIDLTTELSHEAECVAEQDLTKKMNNDEDMLRPV
SRGGSIERRVDNVSVLDCCSDSDEEFVRQHVLKSPPTGYKSLLPALDFGS
ESEGLEDLNQKERLRGNELLFSGNEDVEATKEGLGRSDDDLLDLFHGSSP
GKLQSSDLERNVADRLSLQRTDSDSSSEELHQTQKTKLKKKRKVTNEEIS
AAIRKDKSLYDRILKVESVSYEVILQSIRRSGTAVSRKALTNYLHSEGIM
YKGDVTSKSSKAYMKSLNSQF*

spliced messenger RNA

>Gchil6892.t1 ID=Gchil6892.t1|Name=Gchil6892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00004376_pilon:608938..610803+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTATAATCACCAGCTCGATTGCTGTCCATCATGCTCAACACCTTT
AACATTGTTCACGCCAAGAGAGCGCCTCCAACATGCCAATGAATGTCTAG
ATTCTGAACACCAAAAACAAGCAACTCACGAGCCGTCTTGTGCTATATGC
TCACGCAATCTGAATTTCCTCACCCCTGCAGCGCGTCAAGAGCACGTGAA
TCGATGTCTTGATGTCACCTTATCACCACGTCCACGACAGCGCCGCCCTG
TGAGAAAGAGGCCACGCAGCACGAGCGCAACATCTTCTCGCGTGCCAAGA
CAGGAGCTTCATCGAAAGAAATGCGATGCAAAAGTTGTCAAACTGCTCAC
TCTTCTAGGCCTTGAGAGATATTCACAACGTTTTGCAGATGAGGATATTG
ATTTGGACACTTTGCGTATACTCAAAGATGAAGACTTTGTTGCCCTTCGT
ATTCCAGATGCCGCAAGAAGGCGCATTGCAGATGCTTTGCATGCGGTTCC
CATCCTCGATGGACTTCAGACCCCCACCACCACGGAGCCGGCCAACGAAG
CTCACATCGTTCCCACTCAGAAATTTGCGACGAGCAAGCTTGGTGCAGCG
TTGCAAAGGGAAAAATCCTTATTCgatgatgatgatgatgaCTTTGAATA
TAGGCCTACACAAACTACTCCTGGTAGCGCGAACGAAGAACCTGAGAAAG
TCCCAAGTGCTGCTGCACTTGAACGTGTTCCCAACCCAAGGGCAACTGCT
GCCGTTCCTGAGACTATCGACCTGATTACACCTACAAAGGAAGACAAAAC
AGGGCCCACTGCAATCCAGCCTACTGGTCAAACCTCAGATTCAAGTGATT
TCGATTTCGAAAACGATATGCTTCTGCAGTCTCAGATCTCACTAGAAACG
AAAATTGAGAAATGGAAAGAGCAGCAGACAAGAAAGGAAGAGATGCGCCA
CCAGGATCAGATGGCCAAGATTGAATCCAAGTATAGAAGTATGATAGCGC
GGCTCGAAGGAAAGATTAAGAGTCCAGCAGCATCTCCACAATCTGAACCT
ATCGCATCTATACGCCGAAGTGACGGCACCAATCACATGGAGCCTACTCC
CATCGACTTGACCACTGAACTTTCTCATGAAGCAGAATGCGTCGCGGAAC
AAGATTTAACAAAGAAAATGAATAACGACGAAGACATGCTCAGGCCAGTG
TCAAGGGGTGGAAGTATTGAACGGAGAGTTGATAATGTTAGTGTTTTAGA
TTGCTGCAGTGATTCAGATGAAGAATTTGTTCGGCAACACGTGCTCAAAT
CACCCCCGACAGGTTACAAGAGTCTGCTCCCAGCCTTGGATTTTGGTAGT
GAATCAGAAGGCTTGGAAGATTTGAACCAAAAAGAGAGACTAAGGGGTAA
TGAACTGCTGTTTTCCGGTAATGAAGATGTAGAAGCTACAAAGGAAGGAC
TAGGCAGAAGTGATGATGACTTATTGGACCTCTTCCACGGTAGTAGTCCG
GGAAAACTGCAATCCTCAGACTTAGAAAGAAACGTGGCTGACAGACTATC
TCTACAACGTACAGATTCTGATTCAAGCTCAGAGGAATTACATCAAACGC
AAAAGACTAAACTGAAAAAAAAGAGGAAAGTAACCAACGAAGAAATTTCA
GCAGCTATACGGAAGGATAAGTCCCTGTATGACCGCATCCTCAAAGTAGA
GTCCGTGTCGTACGAGGTAATATTACAAAGCATACGAAGATCGGGAACAG
CGGTTTCGAGAAAAGCCCTGACGAACTACTTACACTCAGAAGGTATCATG
TACAAAGGGGATGTAACGTCAAAGTCGTCGAAGGCTTACATGAAGAGCCT
CAATTCTCAGTTCTAG

protein sequence of Gchil6892.t1

>Gchil6892.t1 ID=Gchil6892.t1|Name=Gchil6892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=622bp
MDYNHQLDCCPSCSTPLTLFTPRERLQHANECLDSEHQKQATHEPSCAIC
SRNLNFLTPAARQEHVNRCLDVTLSPRPRQRRPVRKRPRSTSATSSRVPR
QELHRKKCDAKVVKLLTLLGLERYSQRFADEDIDLDTLRILKDEDFVALR
IPDAARRRIADALHAVPILDGLQTPTTTEPANEAHIVPTQKFATSKLGAA
LQREKSLFDDDDDDFEYRPTQTTPGSANEEPEKVPSAAALERVPNPRATA
AVPETIDLITPTKEDKTGPTAIQPTGQTSDSSDFDFENDMLLQSQISLET
KIEKWKEQQTRKEEMRHQDQMAKIESKYRSMIARLEGKIKSPAASPQSEP
IASIRRSDGTNHMEPTPIDLTTELSHEAECVAEQDLTKKMNNDEDMLRPV
SRGGSIERRVDNVSVLDCCSDSDEEFVRQHVLKSPPTGYKSLLPALDFGS
ESEGLEDLNQKERLRGNELLFSGNEDVEATKEGLGRSDDDLLDLFHGSSP
GKLQSSDLERNVADRLSLQRTDSDSSSEELHQTQKTKLKKKRKVTNEEIS
AAIRKDKSLYDRILKVESVSYEVILQSIRRSGTAVSRKALTNYLHSEGIM
YKGDVTSKSSKAYMKSLNSQF*

mRNA from alignment at tig00004376_pilon:608938..610803+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6892.t1 ID=Gchil6892.t1|Name=Gchil6892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00004376_pilon:608938..610803+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTATAATCACCAGCTCGATTGCTGTCCATCATGCTCAACACCTTT
AACATTGTTCACGCCAAGAGAGCGCCTCCAACATGCCAATGAATGTCTAG
ATTCTGAACACCAAAAACAAGCAACTCACGAGCCGTCTTGTGCTATATGC
TCACGCAATCTGAATTTCCTCACCCCTGCAGCGCGTCAAGAGCACGTGAA
TCGATGTCTTGATGTCACCTTATCACCACGTCCACGACAGCGCCGCCCTG
TGAGAAAGAGGCCACGCAGCACGAGCGCAACATCTTCTCGCGTGCCAAGA
CAGGAGCTTCATCGAAAGAAATGCGATGCAAAAGTTGTCAAACTGCTCAC
TCTTCTAGGCCTTGAGAGATATTCACAACGTTTTGCAGATGAGGATATTG
ATTTGGACACTTTGCGTATACTCAAAGATGAAGACTTTGTTGCCCTTCGT
ATTCCAGATGCCGCAAGAAGGCGCATTGCAGATGCTTTGCATGCGGTTCC
CATCCTCGATGGACTTCAGACCCCCACCACCACGGAGCCGGCCAACGAAG
CTCACATCGTTCCCACTCAGAAATTTGCGACGAGCAAGCTTGGTGCAGCG
TTGCAAAGGGAAAAATCCTTATTCgatgatgatgatgatgaCTTTGAATA
TAGGCCTACACAAACTACTCCTGGTAGCGCGAACGAAGAACCTGAGAAAG
TCCCAAGTGCTGCTGCACTTGAACGTGTTCCCAACCCAAGGGCAACTGCT
GCCGTTCCTGAGACTATCGACCTGATTACACCTACAAAGGAAGACAAAAC
AGGGCCCACTGCAATCCAGCCTACTGGTCAAACCTCAGATTCAAGTGATT
TCGATTTCGAAAACGATATGCTTCTGCAGTCTCAGATCTCACTAGAAACG
AAAATTGAGAAATGGAAAGAGCAGCAGACAAGAAAGGAAGAGATGCGCCA
CCAGGATCAGATGGCCAAGATTGAATCCAAGTATAGAAGTATGATAGCGC
GGCTCGAAGGAAAGATTAAGAGTCCAGCAGCATCTCCACAATCTGAACCT
ATCGCATCTATACGCCGAAGTGACGGCACCAATCACATGGAGCCTACTCC
CATCGACTTGACCACTGAACTTTCTCATGAAGCAGAATGCGTCGCGGAAC
AAGATTTAACAAAGAAAATGAATAACGACGAAGACATGCTCAGGCCAGTG
TCAAGGGGTGGAAGTATTGAACGGAGAGTTGATAATGTTAGTGTTTTAGA
TTGCTGCAGTGATTCAGATGAAGAATTTGTTCGGCAACACGTGCTCAAAT
CACCCCCGACAGGTTACAAGAGTCTGCTCCCAGCCTTGGATTTTGGTAGT
GAATCAGAAGGCTTGGAAGATTTGAACCAAAAAGAGAGACTAAGGGGTAA
TGAACTGCTGTTTTCCGGTAATGAAGATGTAGAAGCTACAAAGGAAGGAC
TAGGCAGAAGTGATGATGACTTATTGGACCTCTTCCACGGTAGTAGTCCG
GGAAAACTGCAATCCTCAGACTTAGAAAGAAACGTGGCTGACAGACTATC
TCTACAACGTACAGATTCTGATTCAAGCTCAGAGGAATTACATCAAACGC
AAAAGACTAAACTGAAAAAAAAGAGGAAAGTAACCAACGAAGAAATTTCA
GCAGCTATACGGAAGGATAAGTCCCTGTATGACCGCATCCTCAAAGTAGA
GTCCGTGTCGTACGAGGTAATATTACAAAGCATACGAAGATCGGGAACAG
CGGTTTCGAGAAAAGCCCTGACGAACTACTTACACTCAGAAGGTATCATG
TACAAAGGGGATGTAACGTCAAAGTCGTCGAAGGCTTACATGAAGAGCCT
CAATTCTCAGTTCTAG

Coding sequence (CDS) from alignment at tig00004376_pilon:608938..610803+

>Gchil6892.t1 ID=Gchil6892.t1|Name=Gchil6892.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1866bp|location=Sequence derived from alignment at tig00004376_pilon:608938..610803+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATTATAATCACCAGCTCGATTGCTGTCCATCATGCTCAACACCTTT
AACATTGTTCACGCCAAGAGAGCGCCTCCAACATGCCAATGAATGTCTAG
ATTCTGAACACCAAAAACAAGCAACTCACGAGCCGTCTTGTGCTATATGC
TCACGCAATCTGAATTTCCTCACCCCTGCAGCGCGTCAAGAGCACGTGAA
TCGATGTCTTGATGTCACCTTATCACCACGTCCACGACAGCGCCGCCCTG
TGAGAAAGAGGCCACGCAGCACGAGCGCAACATCTTCTCGCGTGCCAAGA
CAGGAGCTTCATCGAAAGAAATGCGATGCAAAAGTTGTCAAACTGCTCAC
TCTTCTAGGCCTTGAGAGATATTCACAACGTTTTGCAGATGAGGATATTG
ATTTGGACACTTTGCGTATACTCAAAGATGAAGACTTTGTTGCCCTTCGT
ATTCCAGATGCCGCAAGAAGGCGCATTGCAGATGCTTTGCATGCGGTTCC
CATCCTCGATGGACTTCAGACCCCCACCACCACGGAGCCGGCCAACGAAG
CTCACATCGTTCCCACTCAGAAATTTGCGACGAGCAAGCTTGGTGCAGCG
TTGCAAAGGGAAAAATCCTTATTCgatgatgatgatgatgaCTTTGAATA
TAGGCCTACACAAACTACTCCTGGTAGCGCGAACGAAGAACCTGAGAAAG
TCCCAAGTGCTGCTGCACTTGAACGTGTTCCCAACCCAAGGGCAACTGCT
GCCGTTCCTGAGACTATCGACCTGATTACACCTACAAAGGAAGACAAAAC
AGGGCCCACTGCAATCCAGCCTACTGGTCAAACCTCAGATTCAAGTGATT
TCGATTTCGAAAACGATATGCTTCTGCAGTCTCAGATCTCACTAGAAACG
AAAATTGAGAAATGGAAAGAGCAGCAGACAAGAAAGGAAGAGATGCGCCA
CCAGGATCAGATGGCCAAGATTGAATCCAAGTATAGAAGTATGATAGCGC
GGCTCGAAGGAAAGATTAAGAGTCCAGCAGCATCTCCACAATCTGAACCT
ATCGCATCTATACGCCGAAGTGACGGCACCAATCACATGGAGCCTACTCC
CATCGACTTGACCACTGAACTTTCTCATGAAGCAGAATGCGTCGCGGAAC
AAGATTTAACAAAGAAAATGAATAACGACGAAGACATGCTCAGGCCAGTG
TCAAGGGGTGGAAGTATTGAACGGAGAGTTGATAATGTTAGTGTTTTAGA
TTGCTGCAGTGATTCAGATGAAGAATTTGTTCGGCAACACGTGCTCAAAT
CACCCCCGACAGGTTACAAGAGTCTGCTCCCAGCCTTGGATTTTGGTAGT
GAATCAGAAGGCTTGGAAGATTTGAACCAAAAAGAGAGACTAAGGGGTAA
TGAACTGCTGTTTTCCGGTAATGAAGATGTAGAAGCTACAAAGGAAGGAC
TAGGCAGAAGTGATGATGACTTATTGGACCTCTTCCACGGTAGTAGTCCG
GGAAAACTGCAATCCTCAGACTTAGAAAGAAACGTGGCTGACAGACTATC
TCTACAACGTACAGATTCTGATTCAAGCTCAGAGGAATTACATCAAACGC
AAAAGACTAAACTGAAAAAAAAGAGGAAAGTAACCAACGAAGAAATTTCA
GCAGCTATACGGAAGGATAAGTCCCTGTATGACCGCATCCTCAAAGTAGA
GTCCGTGTCGTACGAGGTAATATTACAAAGCATACGAAGATCGGGAACAG
CGGTTTCGAGAAAAGCCCTGACGAACTACTTACACTCAGAAGGTATCATG
TACAAAGGGGATGTAACGTCAAAGTCGTCGAAGGCTTACATGAAGAGCCT
CAATTCTCAGTTCTAG