Gchil6882.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6882.t1
Unique NameGchil6882.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:582506..583162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6882Gchil6882Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 582506..583162 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6882.t1.start1Gchil6882.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 582506..582508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6882.t1.CDS1Gchil6882.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 582506..583162 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6882.t1.exon1Gchil6882.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 582506..583162 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6882.t1.stop1Gchil6882.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 583160..583162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6882.t1Gchil6882.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 582506..583162 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6882.t1 ID=Gchil6882.t1|Name=Gchil6882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MTAAKQKTSDPGKCPGPGTDDQPLPQDELFQIIDESGEGFGFDLTPEALA
KPFAIGATSVFSLGMLAGIPLGLAMARSQESKGTSRQIRPSLEGVKFAAT
TFGLGTLLCGAMGVAGFYGLKTYYGVESFEEFGLKMRQVVPQKRSEMENG
FGPALRFIRRNAGDNLPGPMKSLREKFRESRLGSWIKQQVDLTIVEEEAH
QNTDSGEERSKQGHSQNE*
back to top

spliced messenger RNA

>Gchil6882.t1 ID=Gchil6882.t1|Name=Gchil6882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004376_pilon:582506..583162+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTGCAAAACAAAAAACCTCAGACCCAGGCAAATGTCCAGGGCC
TGGTACCGACGATCAACCGCTTCCCCAAGATGAGCTATTTCAGATCATCG
ACGAGAGTGGGGAGGGATTCGGTTTCGATTTAACTCCCGAGGCGTTGGCC
AAGCCATTCGCCATCGGAGCAACATCAGTATTTTCGCTGGGCATGCTGGC
TGGTATCCCTCTCGGGTTAGCTATGGCAAGGTCTCAGGAATCGAAAGGGA
CGTCACGGCAAATACGACCTTCTTTGGAGGGTGTGAAGTTCGCGGCTACT
ACCTTTGGCCTTGGGACTTTGCTATGTGGGGCAATGGGTGTTGCCGGATT
TTATGGCTTAAAAACATATTATGGAGTAGAAAGCTTCGAAGAATTTGGAC
TTAAGATGCGACAAGTCGTCCCCCAAAAACGATCAGAAATGGAGAACGGG
TTCGGACCTGCTCTCAGGTTCATCAGGAGAAACGCTGGTGACAACCTTCC
CGGTCCTATGAAATCTCTGAGAGAAAAATTTCGCGAGTCCCGTTTGGGAA
GCTGGATAAAGCAACAGGTCGATTTGACAATCGTGGAAGAGGAGGCTCAC
CAGAATACGGATAGTGGCGAAGAAAGGTCAAAACAAGGTCATTCTCAGAA
CGAATAA
back to top

protein sequence of Gchil6882.t1

>Gchil6882.t1 ID=Gchil6882.t1|Name=Gchil6882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MTAAKQKTSDPGKCPGPGTDDQPLPQDELFQIIDESGEGFGFDLTPEALA
KPFAIGATSVFSLGMLAGIPLGLAMARSQESKGTSRQIRPSLEGVKFAAT
TFGLGTLLCGAMGVAGFYGLKTYYGVESFEEFGLKMRQVVPQKRSEMENG
FGPALRFIRRNAGDNLPGPMKSLREKFRESRLGSWIKQQVDLTIVEEEAH
QNTDSGEERSKQGHSQNE*
back to top

mRNA from alignment at tig00004376_pilon:582506..583162+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6882.t1 ID=Gchil6882.t1|Name=Gchil6882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004376_pilon:582506..583162+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTGCAAAACAAAAAACCTCAGACCCAGGCAAATGTCCAGGGCC
TGGTACCGACGATCAACCGCTTCCCCAAGATGAGCTATTTCAGATCATCG
ACGAGAGTGGGGAGGGATTCGGTTTCGATTTAACTCCCGAGGCGTTGGCC
AAGCCATTCGCCATCGGAGCAACATCAGTATTTTCGCTGGGCATGCTGGC
TGGTATCCCTCTCGGGTTAGCTATGGCAAGGTCTCAGGAATCGAAAGGGA
CGTCACGGCAAATACGACCTTCTTTGGAGGGTGTGAAGTTCGCGGCTACT
ACCTTTGGCCTTGGGACTTTGCTATGTGGGGCAATGGGTGTTGCCGGATT
TTATGGCTTAAAAACATATTATGGAGTAGAAAGCTTCGAAGAATTTGGAC
TTAAGATGCGACAAGTCGTCCCCCAAAAACGATCAGAAATGGAGAACGGG
TTCGGACCTGCTCTCAGGTTCATCAGGAGAAACGCTGGTGACAACCTTCC
CGGTCCTATGAAATCTCTGAGAGAAAAATTTCGCGAGTCCCGTTTGGGAA
GCTGGATAAAGCAACAGGTCGATTTGACAATCGTGGAAGAGGAGGCTCAC
CAGAATACGGATAGTGGCGAAGAAAGGTCAAAACAAGGTCATTCTCAGAA
CGAATAA
back to top

Coding sequence (CDS) from alignment at tig00004376_pilon:582506..583162+

>Gchil6882.t1 ID=Gchil6882.t1|Name=Gchil6882.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00004376_pilon:582506..583162+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCTGCAAAACAAAAAACCTCAGACCCAGGCAAATGTCCAGGGCC
TGGTACCGACGATCAACCGCTTCCCCAAGATGAGCTATTTCAGATCATCG
ACGAGAGTGGGGAGGGATTCGGTTTCGATTTAACTCCCGAGGCGTTGGCC
AAGCCATTCGCCATCGGAGCAACATCAGTATTTTCGCTGGGCATGCTGGC
TGGTATCCCTCTCGGGTTAGCTATGGCAAGGTCTCAGGAATCGAAAGGGA
CGTCACGGCAAATACGACCTTCTTTGGAGGGTGTGAAGTTCGCGGCTACT
ACCTTTGGCCTTGGGACTTTGCTATGTGGGGCAATGGGTGTTGCCGGATT
TTATGGCTTAAAAACATATTATGGAGTAGAAAGCTTCGAAGAATTTGGAC
TTAAGATGCGACAAGTCGTCCCCCAAAAACGATCAGAAATGGAGAACGGG
TTCGGACCTGCTCTCAGGTTCATCAGGAGAAACGCTGGTGACAACCTTCC
CGGTCCTATGAAATCTCTGAGAGAAAAATTTCGCGAGTCCCGTTTGGGAA
GCTGGATAAAGCAACAGGTCGATTTGACAATCGTGGAAGAGGAGGCTCAC
CAGAATACGGATAGTGGCGAAGAAAGGTCAAAACAAGGTCATTCTCAGAA
CGAATAA
back to top