Gchil688.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil688.t1
Unique NameGchil688.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length657
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004431_piloncontigtig00004431_pilon:42383..44353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil688Gchil688Gracilaria chilensis NLEC103_M9 malegenetig00004431_pilon 42383..44353 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil688.t1.stop1Gchil688.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004431_pilon 42383..42385 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil688.t1.CDS1Gchil688.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004431_pilon 42383..44353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil688.t1.exon1Gchil688.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004431_pilon 42383..44353 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil688.t1.start1Gchil688.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004431_pilon 44351..44353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil688.t1Gchil688.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004431_pilon 42383..44353 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil688.t1 ID=Gchil688.t1|Name=Gchil688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp
MVCVVCMCPNSLDDARTGGSEKTSSPPPRQHKRKPGRPPTYVFSKPDHEL
SENERRLKGSVIKRRIRQNRQYHRKRRLQQMATANIETNTQSPVISTTDH
STHAFSSAAGPAAPPLELSSLPVPPNHSARLNSLAPHPLSLSPLPSIPPP
NEIPFSLNAGCEISTTLASLPAPQPPSLRQMCNSPPDQNIASEAELEISA
RHALSDSNRMMRIASNEPLLAAQLATRIAALPINHSSLSKLLIFPSTFDA
TSALAVLNVRLENAPTLIRSLVDVSLLSAESSGRYFVSQVARELLSKYQG
SRQPEVQRRFILNYAQKLLIFGPEHLHCDGNQRQLAMKLYDDERGNMDIA
VRLSQSLHTSTEPLLHRFLAVSATVMRYSVSASNRVQIFSDALNFPCPLA
ERRPHARIRLALAEAYLDLLSFSPAKQHLETAIANLAMYQDNGDSDISSV
LALLLLAEVRASERELQHAKSLLSQALRNMRSRSMERSSYAACCLLTLAS
VYSAMHEESKALFAVNSAIDVLVAVNFKEMPIHADALRALGRVLFRMGEV
DKAQKLFMQGLKIVQNWMARPEWHQAPFQHCPHLDVFLVELVAWTFVKQD
RTNEASALFEQAKALRRMRNLDETRCVNPFEDAVHSDGSSEIGGAQSSWL
YSRHLY*
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spliced messenger RNA

>Gchil688.t1 ID=Gchil688.t1|Name=Gchil688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at tig00004431_pilon:42383..44353- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTGCGTTGTCTGCATGTGCCCCAACAGTCTAGATGACGCCCGTAC
TGGCGGGAGCGAAAAGACGTCTTCGCCTCCCCCAAGGCAGCACAAGCGCA
AGCCCGGCCGCCCTCCTACCTACGTTTTTTCCAAGCCTGACCATGAGCTC
TCTGAAAACGAGCGCCGCTTGAAGGGCTCTGTCATCAAGCGTCGTATTCG
ACAGAATCGTCAATACCACCGAAAACGGCGTCTTCAACAAATGGCGACCG
CCAACATTGAGACAAACACACAATCTCCTGTCATCTCCACCACCGATCAT
TCTACTCATGCATTCAGCTCTGCCGCTGGTCCAGCGGCGCCACCACTTGA
ATTGTCGAGTCTACCTGTTCCTCCCAACCATTCTGCTCGTCTGAATTCAT
TGGCACCGCATCCGCTCTCCCTCTCTCCATTGCCTTCCATCCCGCCTCCA
AATGAAATCCCATTTTCATTAAATGCTGGATGCGAGATCTCCACCACTCT
GGCTTCGCTTCCAGCTCCTCAACCTCCAAGTCTGCGACAAATGTGCAATT
CACCACCCGATCAAAACATTGCCAGTGAAGCTGAATTAGAAATCTCTGCT
CGACATGCGCTTTCTGATTCCAATAGAATGATGCGAATCGCATCAAACGA
ACCTCTTCTTGCCGCTCAACTAGCCACTCGAATTGCTGCTCTACCTATTA
ATCATTCATCCTTATCTAAACTGCTAATATTTCCTTCAACCTTTGATGCC
ACATCTGCACTCGCCGTTCTAAACGTTCGTTTAGAAAATGCTCCGACATT
AATTCGATCTCTTGTTGACGTAAGCCTACTTTCCGCTGAGAGTTCGGGTC
GTTATTTCGTGAGTCAAGTCGCGAGAGAGTTACTTTCGAAGTACCAAGGG
TCTCGCCAACCTGAAGTCCAAAGACGATTCATTCTTAATTACGCTCAGAA
GCTTCTTATCTTCGGTCCGGAACATCTACACTGTGACGGCAATCAGCGAC
AACTGGCAATGAAGCTCTATGACGACGAACGAGGGAATATGGATATTGCC
GTTCGTCTCTCCCAATCTCTGCACACGTCGACCGAACCTCTTTTACACCG
CTTTCTTGCTGTTTCTGCGACTGTCATGAGGTACTCTGTCTCCGCATCCA
ATCGCGTGCAAATCTTCAGCGACGCACTAAACTTCCCATGCCCACTTGCT
GAAAGAAGACCCCATGCTCGGATCCGCTTGGCTCTTGCTGAAGCATATCT
TGACTTGCTTTCGTTTTCTCCGGCTAAGCAACATTTGGAGACGGCCATTG
CAAATTTAGCAATGTATCAGGACAATGGCGACTCAGATATAAGTAGTGTT
TTAGCTCTGCTGCTCCTCGCTGAGGTTCGTGCTTCGGAGCGCGAGTTGCA
GCATGCCAAGAGTCTCCTTAGCCAGGCATTGCGTAATATGCGTAGTCGAT
CTATGGAGCGGTCGTCGTATGCAGCTTGTTGTTTGCTCACCTTGGCATCG
GTATATTCTGCTATGCATGAAGAAAGCAAAGCATTGTTTGCTGTTAACAG
CGCCATCGACGTACTTGTCGCTGTTAACTTTAAAGAGATGCCAATACACG
CGGATGCACTTCGCGCATTGGGCCGTGTTCTTTTTCGAATGGGGGAAGTG
GATAAGGCGCAGAAATTGTTCATGCAAGGATTGAAGATTGTACAAAATTG
GATGGCCCGTCCAGAATGGCATCAAGCCCCTTTTCAACATTGTCCACACC
TCGATGTGTTTTTGGTTGAGTTAGTTGCTTGGACATTTGTAAAACAAGAT
AGAACGAATGAAGCCTCAGCTTTGTTTGAGCAAGCAAAGGCCCTAAGACG
AATGAGGAATTTGGATGAGACAAGGTGTGTTAATCCATTTGAAGATGCCG
TCCATTCTGACGGGTCTTCGGAGATCGGTGGTGCACAGAGTTCTTGGCTT
TACTCCAGACATTTGTACTAA
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protein sequence of Gchil688.t1

>Gchil688.t1 ID=Gchil688.t1|Name=Gchil688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=657bp
MVCVVCMCPNSLDDARTGGSEKTSSPPPRQHKRKPGRPPTYVFSKPDHEL
SENERRLKGSVIKRRIRQNRQYHRKRRLQQMATANIETNTQSPVISTTDH
STHAFSSAAGPAAPPLELSSLPVPPNHSARLNSLAPHPLSLSPLPSIPPP
NEIPFSLNAGCEISTTLASLPAPQPPSLRQMCNSPPDQNIASEAELEISA
RHALSDSNRMMRIASNEPLLAAQLATRIAALPINHSSLSKLLIFPSTFDA
TSALAVLNVRLENAPTLIRSLVDVSLLSAESSGRYFVSQVARELLSKYQG
SRQPEVQRRFILNYAQKLLIFGPEHLHCDGNQRQLAMKLYDDERGNMDIA
VRLSQSLHTSTEPLLHRFLAVSATVMRYSVSASNRVQIFSDALNFPCPLA
ERRPHARIRLALAEAYLDLLSFSPAKQHLETAIANLAMYQDNGDSDISSV
LALLLLAEVRASERELQHAKSLLSQALRNMRSRSMERSSYAACCLLTLAS
VYSAMHEESKALFAVNSAIDVLVAVNFKEMPIHADALRALGRVLFRMGEV
DKAQKLFMQGLKIVQNWMARPEWHQAPFQHCPHLDVFLVELVAWTFVKQD
RTNEASALFEQAKALRRMRNLDETRCVNPFEDAVHSDGSSEIGGAQSSWL
YSRHLY*
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mRNA from alignment at tig00004431_pilon:42383..44353-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil688.t1 ID=Gchil688.t1|Name=Gchil688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at tig00004431_pilon:42383..44353- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTGCGTTGTCTGCATGTGCCCCAACAGTCTAGATGACGCCCGTAC
TGGCGGGAGCGAAAAGACGTCTTCGCCTCCCCCAAGGCAGCACAAGCGCA
AGCCCGGCCGCCCTCCTACCTACGTTTTTTCCAAGCCTGACCATGAGCTC
TCTGAAAACGAGCGCCGCTTGAAGGGCTCTGTCATCAAGCGTCGTATTCG
ACAGAATCGTCAATACCACCGAAAACGGCGTCTTCAACAAATGGCGACCG
CCAACATTGAGACAAACACACAATCTCCTGTCATCTCCACCACCGATCAT
TCTACTCATGCATTCAGCTCTGCCGCTGGTCCAGCGGCGCCACCACTTGA
ATTGTCGAGTCTACCTGTTCCTCCCAACCATTCTGCTCGTCTGAATTCAT
TGGCACCGCATCCGCTCTCCCTCTCTCCATTGCCTTCCATCCCGCCTCCA
AATGAAATCCCATTTTCATTAAATGCTGGATGCGAGATCTCCACCACTCT
GGCTTCGCTTCCAGCTCCTCAACCTCCAAGTCTGCGACAAATGTGCAATT
CACCACCCGATCAAAACATTGCCAGTGAAGCTGAATTAGAAATCTCTGCT
CGACATGCGCTTTCTGATTCCAATAGAATGATGCGAATCGCATCAAACGA
ACCTCTTCTTGCCGCTCAACTAGCCACTCGAATTGCTGCTCTACCTATTA
ATCATTCATCCTTATCTAAACTGCTAATATTTCCTTCAACCTTTGATGCC
ACATCTGCACTCGCCGTTCTAAACGTTCGTTTAGAAAATGCTCCGACATT
AATTCGATCTCTTGTTGACGTAAGCCTACTTTCCGCTGAGAGTTCGGGTC
GTTATTTCGTGAGTCAAGTCGCGAGAGAGTTACTTTCGAAGTACCAAGGG
TCTCGCCAACCTGAAGTCCAAAGACGATTCATTCTTAATTACGCTCAGAA
GCTTCTTATCTTCGGTCCGGAACATCTACACTGTGACGGCAATCAGCGAC
AACTGGCAATGAAGCTCTATGACGACGAACGAGGGAATATGGATATTGCC
GTTCGTCTCTCCCAATCTCTGCACACGTCGACCGAACCTCTTTTACACCG
CTTTCTTGCTGTTTCTGCGACTGTCATGAGGTACTCTGTCTCCGCATCCA
ATCGCGTGCAAATCTTCAGCGACGCACTAAACTTCCCATGCCCACTTGCT
GAAAGAAGACCCCATGCTCGGATCCGCTTGGCTCTTGCTGAAGCATATCT
TGACTTGCTTTCGTTTTCTCCGGCTAAGCAACATTTGGAGACGGCCATTG
CAAATTTAGCAATGTATCAGGACAATGGCGACTCAGATATAAGTAGTGTT
TTAGCTCTGCTGCTCCTCGCTGAGGTTCGTGCTTCGGAGCGCGAGTTGCA
GCATGCCAAGAGTCTCCTTAGCCAGGCATTGCGTAATATGCGTAGTCGAT
CTATGGAGCGGTCGTCGTATGCAGCTTGTTGTTTGCTCACCTTGGCATCG
GTATATTCTGCTATGCATGAAGAAAGCAAAGCATTGTTTGCTGTTAACAG
CGCCATCGACGTACTTGTCGCTGTTAACTTTAAAGAGATGCCAATACACG
CGGATGCACTTCGCGCATTGGGCCGTGTTCTTTTTCGAATGGGGGAAGTG
GATAAGGCGCAGAAATTGTTCATGCAAGGATTGAAGATTGTACAAAATTG
GATGGCCCGTCCAGAATGGCATCAAGCCCCTTTTCAACATTGTCCACACC
TCGATGTGTTTTTGGTTGAGTTAGTTGCTTGGACATTTGTAAAACAAGAT
AGAACGAATGAAGCCTCAGCTTTGTTTGAGCAAGCAAAGGCCCTAAGACG
AATGAGGAATTTGGATGAGACAAGGTGTGTTAATCCATTTGAAGATGCCG
TCCATTCTGACGGGTCTTCGGAGATCGGTGGTGCACAGAGTTCTTGGCTT
TACTCCAGACATTTGTACTAA
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Coding sequence (CDS) from alignment at tig00004431_pilon:42383..44353-

>Gchil688.t1 ID=Gchil688.t1|Name=Gchil688.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1971bp|location=Sequence derived from alignment at tig00004431_pilon:42383..44353- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTGCGTTGTCTGCATGTGCCCCAACAGTCTAGATGACGCCCGTAC
TGGCGGGAGCGAAAAGACGTCTTCGCCTCCCCCAAGGCAGCACAAGCGCA
AGCCCGGCCGCCCTCCTACCTACGTTTTTTCCAAGCCTGACCATGAGCTC
TCTGAAAACGAGCGCCGCTTGAAGGGCTCTGTCATCAAGCGTCGTATTCG
ACAGAATCGTCAATACCACCGAAAACGGCGTCTTCAACAAATGGCGACCG
CCAACATTGAGACAAACACACAATCTCCTGTCATCTCCACCACCGATCAT
TCTACTCATGCATTCAGCTCTGCCGCTGGTCCAGCGGCGCCACCACTTGA
ATTGTCGAGTCTACCTGTTCCTCCCAACCATTCTGCTCGTCTGAATTCAT
TGGCACCGCATCCGCTCTCCCTCTCTCCATTGCCTTCCATCCCGCCTCCA
AATGAAATCCCATTTTCATTAAATGCTGGATGCGAGATCTCCACCACTCT
GGCTTCGCTTCCAGCTCCTCAACCTCCAAGTCTGCGACAAATGTGCAATT
CACCACCCGATCAAAACATTGCCAGTGAAGCTGAATTAGAAATCTCTGCT
CGACATGCGCTTTCTGATTCCAATAGAATGATGCGAATCGCATCAAACGA
ACCTCTTCTTGCCGCTCAACTAGCCACTCGAATTGCTGCTCTACCTATTA
ATCATTCATCCTTATCTAAACTGCTAATATTTCCTTCAACCTTTGATGCC
ACATCTGCACTCGCCGTTCTAAACGTTCGTTTAGAAAATGCTCCGACATT
AATTCGATCTCTTGTTGACGTAAGCCTACTTTCCGCTGAGAGTTCGGGTC
GTTATTTCGTGAGTCAAGTCGCGAGAGAGTTACTTTCGAAGTACCAAGGG
TCTCGCCAACCTGAAGTCCAAAGACGATTCATTCTTAATTACGCTCAGAA
GCTTCTTATCTTCGGTCCGGAACATCTACACTGTGACGGCAATCAGCGAC
AACTGGCAATGAAGCTCTATGACGACGAACGAGGGAATATGGATATTGCC
GTTCGTCTCTCCCAATCTCTGCACACGTCGACCGAACCTCTTTTACACCG
CTTTCTTGCTGTTTCTGCGACTGTCATGAGGTACTCTGTCTCCGCATCCA
ATCGCGTGCAAATCTTCAGCGACGCACTAAACTTCCCATGCCCACTTGCT
GAAAGAAGACCCCATGCTCGGATCCGCTTGGCTCTTGCTGAAGCATATCT
TGACTTGCTTTCGTTTTCTCCGGCTAAGCAACATTTGGAGACGGCCATTG
CAAATTTAGCAATGTATCAGGACAATGGCGACTCAGATATAAGTAGTGTT
TTAGCTCTGCTGCTCCTCGCTGAGGTTCGTGCTTCGGAGCGCGAGTTGCA
GCATGCCAAGAGTCTCCTTAGCCAGGCATTGCGTAATATGCGTAGTCGAT
CTATGGAGCGGTCGTCGTATGCAGCTTGTTGTTTGCTCACCTTGGCATCG
GTATATTCTGCTATGCATGAAGAAAGCAAAGCATTGTTTGCTGTTAACAG
CGCCATCGACGTACTTGTCGCTGTTAACTTTAAAGAGATGCCAATACACG
CGGATGCACTTCGCGCATTGGGCCGTGTTCTTTTTCGAATGGGGGAAGTG
GATAAGGCGCAGAAATTGTTCATGCAAGGATTGAAGATTGTACAAAATTG
GATGGCCCGTCCAGAATGGCATCAAGCCCCTTTTCAACATTGTCCACACC
TCGATGTGTTTTTGGTTGAGTTAGTTGCTTGGACATTTGTAAAACAAGAT
AGAACGAATGAAGCCTCAGCTTTGTTTGAGCAAGCAAAGGCCCTAAGACG
AATGAGGAATTTGGATGAGACAAGGTGTGTTAATCCATTTGAAGATGCCG
TCCATTCTGACGGGTCTTCGGAGATCGGTGGTGCACAGAGTTCTTGGCTT
TACTCCAGACATTTGTACTAA
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