Gchil6878.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6878.t1
Unique Name	Gchil6878.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	670

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:571884..573893 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ08055
PFAMs	Hint
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K06224
KEGG Pathway	ko04341,map04341
KEGG Module	M00678
Evalue	3.61e-13
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota,37ZDK@33090\|Viridiplantae,3GN67@35493\|Streptophyta
Description	Hint module
COG category	T
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6878	Gchil6878	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 571884..573893 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6878.t1.start1	Gchil6878.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 571884..571886 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6878.t1.CDS1	Gchil6878.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 571884..573893 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6878.t1.exon1	Gchil6878.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 571884..573893 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6878.t1.stop1	Gchil6878.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 573891..573893 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6878.t1	Gchil6878.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 571884..573893 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:571884..573893+
coding sequence from alignment at tig00004376_pilon:571884..573893+

mRNA sequence

>Gchil6878.t1 ID=Gchil6878.t1|Name=Gchil6878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=670bp
MRLAHRLIVVAAAAAALCGCVAHTSAAHTSAASHALRRNAFRATFPIEIM
LKDSETGVLLHRPVGIVAGLDTTMYVASVSGQIMLVDVKTGAATLLNRGG
DDQPFGGLCLDSRGPGTLYATGRNTGAVFAFNRRGELLQRYQLTTVREKG
GTAFLTGCIQTRYQLIVIDSNNARFHYLPLADEGPLRGYPPLLTDTVFQG
ERLLYEGDAYIHKNTIINAYGVEWTQKFNRSAYVLNSATGHIFTVTLNES
TVIPLMRKVTIMGRVDTFVGAMAILFDSTNENIMYISMPHLNAIAVLEFS
RTDSRKAKFIRYLKSALTNGPVAMGEFGNWLFPISGDFDRRSPNTPFSIV
QIPRHEQIIETGDSSDEYTTVLDDVEQTSLPVVFDTAEVQQEIRTEPDPV
GTSAPEPILPQISQPLDESTSPGHSTAPADATTDSPAVDDDSARETPAAA
TPVSADATVTPSDPEQPDREPSTFGAAAEESASATPSQRACFPADATVTL
RDGSSSRMDRLRIGDRVHVATDEEGDPVFSEVFMFSHQHPHIVSSFVSIE
ASHGDNLHVSPGHYLYVNDKLLSAAHVRPRDVLQSQANRSILALRVSSTQ
RRGLYNPQTVHGDIVVNGVRVSTYTTAVQPVTAQALMAPVRALYSCRTRW
PQRISALLSSGIGRSQPVL*

spliced messenger RNA

>Gchil6878.t1 ID=Gchil6878.t1|Name=Gchil6878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at tig00004376_pilon:571884..573893+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTCGCGCACCGTCTCATCGTGGTGGCAGCCGCCGCCGCAGCGCT
CTGCGGCTGCGTCGCGCACACAAGCGCCGCGCACACAAGCGCCGCGTCGC
ACGCATTGCGTCGCAATGCATTCCGCGCCACCTTTCCCATTGAAATCATG
CTCAAGGACTCCGAAACAGGCGTTCTACTTCATCGTCCGGTCGGCATCGT
CGCCGGACTGGACACCACCATGTACGTCGCCTCCGTCTCTGGTCAGATCA
TGCTGGTGGACGTCAAGACCGGCGCCGCCACCTTGCTCAATCGCGGCGGC
GACGATCAGCCCTTTGGTGGCTTGTGTCTTGACTCGCGCGGACCGGGCAC
GCTTTACGCCACCGGCCGAAACACCGGTGCTGTCTTTGCTTTCAACCGCC
GTGGCGAGTTGCTGCAGCGTTATCAACTCACCACTGTGCGTGAAAAGGGT
GGCACTGCATTCCTTACTGGATGCATCCAAACGCGCTATCAATTGATCGT
CATCGACTCAAATAACGCTCGATTTCACTACCTTCCGCTCGCAGACGAAG
GCCCGTTGCGCGGCTATCCGCCCCTGCTCACAGACACCGTCTTTCAGGGC
GAGCGTCTTTTGTATGAAGGCGATGCATACATCCACAAAAATACTATCAT
CAACGCCTACGGCGTGGAGTGGACCCAAAAGTTCAACCGATCCGCCTATG
TGCTCAACTCCGCCACGGGTCACATATTTACCGTCACCCTCAATGAGAGC
ACTGTCATCCCGCTCATGCGCAAGGTCACCATCATGGGACGCGTCGACAC
CTTTGTCGGCGCGATGGCAATTCTCTTCGATTCCACCAACGAGAACATCA
TGTACATTTCAATGCCCCATCTCAACGCCATCGCTGTGCTCGAATTCAGT
CGCACCGACTCGCGCAAGGCCAAGTTCATTCGCTACTTGAAGAGCGCCCT
CACCAACGGCCCCGTCGCCATGGGCGAGTTTGGCAACTGGCTCTTCCCCA
TCAGCGGCGATTTTGACAGACGCTCCCCAAATACCCCCTTCAGCATTGTG
CAAATCCCGCGTCATGAGCAAATCATCGAAACGGGAGACTCCTCCGACGA
GTACACTACCGTGCTCGACGACGTCGAGCAAACCTCGCTGCCAGTCGTGT
TTGACACCGCCGAAGTGCAGCAGGAGATTCGCACTGAGCCCGACCCGGTT
GGCACCAGCGCCCCGGAACCAATTCTGCCTCAAATTTCTCAACCGCTCGA
CGAGTCCACCTCGCCGGGCCACAGCACTGCGCCGGCCGATGCCACCACCG
ACAGCCCTGCTGTTGATGACGACTCCGCTCGCGAAACACCTGCTGCCGCT
ACACCCGTGTCCGCGGACGCTACCGTCACGCCGTCGGACCCGGAGCAGCC
CGATCGCGAGCCCTCTACGTTCGGCGCTGCCGCCGAGGAGTCCGCCTCTG
CTACGCCGTCGCAGAGGGCTTGCTTCCCCGCGGACGCCACTGTGACTCTG
CGTGATGGTTCTTCGTCGCGTATGGACCGCCTGCGCATTGGAGATCGCGT
TCACGTGGCCACTGATGAAGAGGGTGACCCTGTGTTCTCTGAAGTGTTCA
TGTTTTCTCACCAGCATCCTCACATCGTTTCGAGCTTTGTGAGCATTGAA
GCTTCACACGGCGACAATTTGCACGTCTCACCGGGCCATTACTTGTACGT
CAACGACAAATTGCTTTCAGCGGCACACGTGCGCCCCCGCGACGTGCTGC
AGTCGCAAGCAAATCGTAGTATACTTGCGCTGCGTGTGTCAAGCACGCAA
AGGCGAGGTTTGTACAATCCGCAAACTGTACATGGCGACATTGTGGTGAA
TGGAGTCCGCGTGAGTACGTACACTACCGCCGTGCAGCCAGTTACTGCAC
AAGCGCTTATGGCTCCTGTTCGAGCGCTGTATTCGTGTCGAACGCGTTGG
CCCCAACGAATAAGCGCCTTGCTCTCCAGTGGAATTGGGCGCTCGCAACC
CGTCTTGTAG

protein sequence of Gchil6878.t1

>Gchil6878.t1 ID=Gchil6878.t1|Name=Gchil6878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=670bp
MRLAHRLIVVAAAAAALCGCVAHTSAAHTSAASHALRRNAFRATFPIEIM
LKDSETGVLLHRPVGIVAGLDTTMYVASVSGQIMLVDVKTGAATLLNRGG
DDQPFGGLCLDSRGPGTLYATGRNTGAVFAFNRRGELLQRYQLTTVREKG
GTAFLTGCIQTRYQLIVIDSNNARFHYLPLADEGPLRGYPPLLTDTVFQG
ERLLYEGDAYIHKNTIINAYGVEWTQKFNRSAYVLNSATGHIFTVTLNES
TVIPLMRKVTIMGRVDTFVGAMAILFDSTNENIMYISMPHLNAIAVLEFS
RTDSRKAKFIRYLKSALTNGPVAMGEFGNWLFPISGDFDRRSPNTPFSIV
QIPRHEQIIETGDSSDEYTTVLDDVEQTSLPVVFDTAEVQQEIRTEPDPV
GTSAPEPILPQISQPLDESTSPGHSTAPADATTDSPAVDDDSARETPAAA
TPVSADATVTPSDPEQPDREPSTFGAAAEESASATPSQRACFPADATVTL
RDGSSSRMDRLRIGDRVHVATDEEGDPVFSEVFMFSHQHPHIVSSFVSIE
ASHGDNLHVSPGHYLYVNDKLLSAAHVRPRDVLQSQANRSILALRVSSTQ
RRGLYNPQTVHGDIVVNGVRVSTYTTAVQPVTAQALMAPVRALYSCRTRW
PQRISALLSSGIGRSQPVL*

mRNA from alignment at tig00004376_pilon:571884..573893+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6878.t1 ID=Gchil6878.t1|Name=Gchil6878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at tig00004376_pilon:571884..573893+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTCGCGCACCGTCTCATCGTGGTGGCAGCCGCCGCCGCAGCGCT
CTGCGGCTGCGTCGCGCACACAAGCGCCGCGCACACAAGCGCCGCGTCGC
ACGCATTGCGTCGCAATGCATTCCGCGCCACCTTTCCCATTGAAATCATG
CTCAAGGACTCCGAAACAGGCGTTCTACTTCATCGTCCGGTCGGCATCGT
CGCCGGACTGGACACCACCATGTACGTCGCCTCCGTCTCTGGTCAGATCA
TGCTGGTGGACGTCAAGACCGGCGCCGCCACCTTGCTCAATCGCGGCGGC
GACGATCAGCCCTTTGGTGGCTTGTGTCTTGACTCGCGCGGACCGGGCAC
GCTTTACGCCACCGGCCGAAACACCGGTGCTGTCTTTGCTTTCAACCGCC
GTGGCGAGTTGCTGCAGCGTTATCAACTCACCACTGTGCGTGAAAAGGGT
GGCACTGCATTCCTTACTGGATGCATCCAAACGCGCTATCAATTGATCGT
CATCGACTCAAATAACGCTCGATTTCACTACCTTCCGCTCGCAGACGAAG
GCCCGTTGCGCGGCTATCCGCCCCTGCTCACAGACACCGTCTTTCAGGGC
GAGCGTCTTTTGTATGAAGGCGATGCATACATCCACAAAAATACTATCAT
CAACGCCTACGGCGTGGAGTGGACCCAAAAGTTCAACCGATCCGCCTATG
TGCTCAACTCCGCCACGGGTCACATATTTACCGTCACCCTCAATGAGAGC
ACTGTCATCCCGCTCATGCGCAAGGTCACCATCATGGGACGCGTCGACAC
CTTTGTCGGCGCGATGGCAATTCTCTTCGATTCCACCAACGAGAACATCA
TGTACATTTCAATGCCCCATCTCAACGCCATCGCTGTGCTCGAATTCAGT
CGCACCGACTCGCGCAAGGCCAAGTTCATTCGCTACTTGAAGAGCGCCCT
CACCAACGGCCCCGTCGCCATGGGCGAGTTTGGCAACTGGCTCTTCCCCA
TCAGCGGCGATTTTGACAGACGCTCCCCAAATACCCCCTTCAGCATTGTG
CAAATCCCGCGTCATGAGCAAATCATCGAAACGGGAGACTCCTCCGACGA
GTACACTACCGTGCTCGACGACGTCGAGCAAACCTCGCTGCCAGTCGTGT
TTGACACCGCCGAAGTGCAGCAGGAGATTCGCACTGAGCCCGACCCGGTT
GGCACCAGCGCCCCGGAACCAATTCTGCCTCAAATTTCTCAACCGCTCGA
CGAGTCCACCTCGCCGGGCCACAGCACTGCGCCGGCCGATGCCACCACCG
ACAGCCCTGCTGTTGATGACGACTCCGCTCGCGAAACACCTGCTGCCGCT
ACACCCGTGTCCGCGGACGCTACCGTCACGCCGTCGGACCCGGAGCAGCC
CGATCGCGAGCCCTCTACGTTCGGCGCTGCCGCCGAGGAGTCCGCCTCTG
CTACGCCGTCGCAGAGGGCTTGCTTCCCCGCGGACGCCACTGTGACTCTG
CGTGATGGTTCTTCGTCGCGTATGGACCGCCTGCGCATTGGAGATCGCGT
TCACGTGGCCACTGATGAAGAGGGTGACCCTGTGTTCTCTGAAGTGTTCA
TGTTTTCTCACCAGCATCCTCACATCGTTTCGAGCTTTGTGAGCATTGAA
GCTTCACACGGCGACAATTTGCACGTCTCACCGGGCCATTACTTGTACGT
CAACGACAAATTGCTTTCAGCGGCACACGTGCGCCCCCGCGACGTGCTGC
AGTCGCAAGCAAATCGTAGTATACTTGCGCTGCGTGTGTCAAGCACGCAA
AGGCGAGGTTTGTACAATCCGCAAACTGTACATGGCGACATTGTGGTGAA
TGGAGTCCGCGTGAGTACGTACACTACCGCCGTGCAGCCAGTTACTGCAC
AAGCGCTTATGGCTCCTGTTCGAGCGCTGTATTCGTGTCGAACGCGTTGG
CCCCAACGAATAAGCGCCTTGCTCTCCAGTGGAATTGGGCGCTCGCAACC
CGTCTTGTAG

Coding sequence (CDS) from alignment at tig00004376_pilon:571884..573893+

>Gchil6878.t1 ID=Gchil6878.t1|Name=Gchil6878.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2010bp|location=Sequence derived from alignment at tig00004376_pilon:571884..573893+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCTCGCGCACCGTCTCATCGTGGTGGCAGCCGCCGCCGCAGCGCT
CTGCGGCTGCGTCGCGCACACAAGCGCCGCGCACACAAGCGCCGCGTCGC
ACGCATTGCGTCGCAATGCATTCCGCGCCACCTTTCCCATTGAAATCATG
CTCAAGGACTCCGAAACAGGCGTTCTACTTCATCGTCCGGTCGGCATCGT
CGCCGGACTGGACACCACCATGTACGTCGCCTCCGTCTCTGGTCAGATCA
TGCTGGTGGACGTCAAGACCGGCGCCGCCACCTTGCTCAATCGCGGCGGC
GACGATCAGCCCTTTGGTGGCTTGTGTCTTGACTCGCGCGGACCGGGCAC
GCTTTACGCCACCGGCCGAAACACCGGTGCTGTCTTTGCTTTCAACCGCC
GTGGCGAGTTGCTGCAGCGTTATCAACTCACCACTGTGCGTGAAAAGGGT
GGCACTGCATTCCTTACTGGATGCATCCAAACGCGCTATCAATTGATCGT
CATCGACTCAAATAACGCTCGATTTCACTACCTTCCGCTCGCAGACGAAG
GCCCGTTGCGCGGCTATCCGCCCCTGCTCACAGACACCGTCTTTCAGGGC
GAGCGTCTTTTGTATGAAGGCGATGCATACATCCACAAAAATACTATCAT
CAACGCCTACGGCGTGGAGTGGACCCAAAAGTTCAACCGATCCGCCTATG
TGCTCAACTCCGCCACGGGTCACATATTTACCGTCACCCTCAATGAGAGC
ACTGTCATCCCGCTCATGCGCAAGGTCACCATCATGGGACGCGTCGACAC
CTTTGTCGGCGCGATGGCAATTCTCTTCGATTCCACCAACGAGAACATCA
TGTACATTTCAATGCCCCATCTCAACGCCATCGCTGTGCTCGAATTCAGT
CGCACCGACTCGCGCAAGGCCAAGTTCATTCGCTACTTGAAGAGCGCCCT
CACCAACGGCCCCGTCGCCATGGGCGAGTTTGGCAACTGGCTCTTCCCCA
TCAGCGGCGATTTTGACAGACGCTCCCCAAATACCCCCTTCAGCATTGTG
CAAATCCCGCGTCATGAGCAAATCATCGAAACGGGAGACTCCTCCGACGA
GTACACTACCGTGCTCGACGACGTCGAGCAAACCTCGCTGCCAGTCGTGT
TTGACACCGCCGAAGTGCAGCAGGAGATTCGCACTGAGCCCGACCCGGTT
GGCACCAGCGCCCCGGAACCAATTCTGCCTCAAATTTCTCAACCGCTCGA
CGAGTCCACCTCGCCGGGCCACAGCACTGCGCCGGCCGATGCCACCACCG
ACAGCCCTGCTGTTGATGACGACTCCGCTCGCGAAACACCTGCTGCCGCT
ACACCCGTGTCCGCGGACGCTACCGTCACGCCGTCGGACCCGGAGCAGCC
CGATCGCGAGCCCTCTACGTTCGGCGCTGCCGCCGAGGAGTCCGCCTCTG
CTACGCCGTCGCAGAGGGCTTGCTTCCCCGCGGACGCCACTGTGACTCTG
CGTGATGGTTCTTCGTCGCGTATGGACCGCCTGCGCATTGGAGATCGCGT
TCACGTGGCCACTGATGAAGAGGGTGACCCTGTGTTCTCTGAAGTGTTCA
TGTTTTCTCACCAGCATCCTCACATCGTTTCGAGCTTTGTGAGCATTGAA
GCTTCACACGGCGACAATTTGCACGTCTCACCGGGCCATTACTTGTACGT
CAACGACAAATTGCTTTCAGCGGCACACGTGCGCCCCCGCGACGTGCTGC
AGTCGCAAGCAAATCGTAGTATACTTGCGCTGCGTGTGTCAAGCACGCAA
AGGCGAGGTTTGTACAATCCGCAAACTGTACATGGCGACATTGTGGTGAA
TGGAGTCCGCGTGAGTACGTACACTACCGCCGTGCAGCCAGTTACTGCAC
AAGCGCTTATGGCTCCTGTTCGAGCGCTGTATTCGTGTCGAACGCGTTGG
CCCCAACGAATAAGCGCCTTGCTCTCCAGTGGAATTGGGCGCTCGCAACC
CGTCTTGTAG