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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704651.1 |
| PFAMs | KH_1,WW |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K13210 |
| Evalue | 1.52e-38 |
| EggNOG OGs | KOG1676@1|root,KOG1676@2759|Eukaryota |
| Description | negative regulation of low-density lipoprotein particle clearance |
| COG category | S |
| BRITE | ko00000,ko03019,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=845bp MPSSYLRHSLDDPPSRARQIASSFRRRSLASSPASSLPSKRPAPDYLHPD SPPRAVIRRTDSSSSMSESPDSEPNCNAPSSPVNAPSRPIAPHPEQFDHT SPEHPSASESNQPEACDFVIVPAEHVGLIIGKHGDTIKAIQNSSNAIVSM DRSYPSRDRKFRISGTEDAVSHCRSLIERRLEAVRNRSDSALETREMWIP VSKIGLVIGAGGATIRSIKEKTGAYATVHNDQVEADRKLLTIHGTAQQAS HARQIIVEILQSAPHTPSRDPSLGASDDSTAMYIPRAAVGSVIGSRGTTL RSLHQKSGAFIRVASDEEAGTSPERQIIISGSAAAVHRARSMIHFVIREG SLRHFDEPHADIHHLQRNDEHPIDSFSRMRDIRRRAYSQGRKEDSFILSA EHIGLLIGKNGTNIREMQNRSGAIIEVTGKNESERESSHRTVSIFGSPTE VKIAKLLIEEKIGINHEEQKPDAEQPNLILAPQDSNIRPKSNCNTEDVNT NSCPASKGEEAEKDEHNKENAPSKEIKETSTVTEAQRVSKTTNIPNKERE NETESKDDGGHSEDSLANTAVESILGASKRNSTDEKQRRVSQNSRTRSNS GPKLADLNKRHSKDGSKHHGVAVMQQQHPSTPVPLPQPHHSYAPPLVSHP QYHPHYPPPPTYYGEPNLSAYPYYGPPPPHSTYAHSMPAMSTPISVNGME GVRSLGSPHGSISIPCQQSEAVSATTTENSKSESDKRGPVNNGSMKTGNS APVQPQAPAQFYPTFYQQQPGGPMMYPTAPPMYGGYVFNQHPSQFNPGPN DYSGKGLGTLQTETFVHPFAVSMSPGMPVPQHGTSMSPVAGSSV* back to topspliced messenger RNA >Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2535bp|location=Sequence derived from alignment at tig00004431_pilon:38657..41191+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCATCTTCGTACCTGCGGCATTCTCTCGATGACCCTCCTTCACGCGC AAGGCAGATAGCAAGCTCTTTTCGTAGACGGTCTCTGGCTTCTAGTCCCG CATCCTCCTTGCCCTCCAAGCGACCCGCTCCCGATTATCTACATCCCGAT TCCCCACCGCGAGCTGTTATTCGTCGAACCGACTCCTCTTCTTCGATGTC GGAATCCCCGGATTCAGAACCGAATTGCAATGCTCCCTCATCCCCCGTGA ACGCCCCTTCACGCCCTATTGCTCCCCATCCTGAGCAATTCGACCACACT AGTCCCGAACATCCGTCTGCGTCCGAATCCAATCAACCCGAGGCATGTGA CTTTGTGATTGTGCCAGCTGAACATGTAGGCCTcatcattggaaaacacg gcgataccatcaaggccatacagaactcctctaaTGCTATTGTTTCCATG GATCGAAGCTATCCCAGTCGCGATCGAAAGTTCCGTATCAGTGGCACCGA GGATGCTGTTTCCCACTGTCGCTCGCTCATTGAGCGCCGTCTTGAAGCTG TCCGTAACCGTTCAGACTCAGCTTTAGAAACTCGAGAGATGTGGATTCCA GTCTCCAAAATTGGGCTCGTCATTGGTGCGGGTGGCGCTACCATTCGTTC TATCAAAGAGAAGACGGGCGCTTATGCCACCGTTCACAACGACCAGGTGG AGGCAGATCGAAAGTTACTTACCATTCACGGCACAGCACAGCAAGCCTCC CATGCACGCCAGATCATAGTTGAAATCCTTCAAAGCGCACCACACACTCC CTCGCGCGACCCTTCTCTCGGCGCGAGTGATGATTCAACTGCCATGTATA TCCCTCGTGCGGCTGTTGGTTCTGTGATCGGCTCCCGAGGAACTACGTTG CGATCGTTGCATCAGAAAAGCGGTGCGTTTATAAGGGTTGCCTCAGATGA GGAAGCTGGCACGAGTCCCGAGAGACAGATTATAATATCAGGCAGTGCCG CGGCGGTTCATCGCGCTCGCTCCATGATCCATTTTGTAATACGAGAAGGT TCCCTGCGACACTTTGATGAGCCTCATGCTGATATCCATCATCTGCAACG AAATGACGAGCACCCAATCGACAGTTTTTCTCGTATGCGCGACATCCGCC GGCGTGCATACTCACAAGGAAGGAAGGAAGATTCCTTTATACTGTCCGCC GAGCACATTGGATTGCTGATTGGCAAGAATGGTACAAACATTCGTGAAAT GCAGAATCGATCAGGGGCAATCATTGAAGTTACAGGCAAGAATGAATCCG AACGAGAAAGCTCCCATCGCACTGTTTCAATATTCGGGTCCCCTACTGAA GTCAAGATTGCGAAGTTGCTCATCGAAGAAAAAATTGGCATTAATCACGA AGAGCAAAAACCTGACGCAGAGCAGCCAAATTTGATTCTGGCACCACAAG ATTCGAACATCCGTCCGAAAAGCAATTGCAATACTGAAGATGTCAATACA AACAGCTGCCCAGCTTCCAAAGGTGAGGAGGCGGAGAAAGATGAACACAA CAAGGAAAATGCACCGTCAAAAGAAATCAAAGAAACCTCCACAGTCACCG AAGCGCAGCGGGTGTCGAAAACTACGAACATTCCaaacaaagaaagagag aacgaaacggaaagcaagGACGATGGAGGGCATTCAGAAGACTCTTTGGC AAACACCGCTGTTGAAAGCATCCTTGGTGCTTCGAAAAGAAACTCCACAG ACGAAAAACAGCGAAGAGTGAGTCAGAACTCCCGAACTCGAAGTAATTCT GGACCGAAGCTAGCTGATTTGAACAAGAGGCATTCGAAGGATGGTTCGAA ACATCATGGGGTGGCAGTGATGCAACAACAACATCCATCAACTCCCGTTC CTCTACCTCAACCACACCATTCTTATGCCCCTCCTTTGGTTTCACACCCA CAGTATCATCCTCACTACCCTCCCCCTCCCACATATTATGGTGAACCGAA CTTGAGCGCTTATCCGTACTACGGTCCACCCCCGCCGCATTCAACATATG CTCACAGCATGCCTGCGATGTCGACGCCGATATCTGTCAATGGCATGGAA GGGGTACGTTCTCTTGGTTCACCACATGGGTCTATTTCCATTCCATGCCA ACAGAGCGAAGCTGTTTCTGCTACCACCACGGAAAACAGCAAATCAGAGA GCGACAAGCGAGGACCAGTCAATAATGGATCTATGAAAACAGGAAACTCC GCACCAGTGCAACCGCAGGCTCCTGCACAATTTTACCCCACATTTTATCA ACAACAGCCTGGCGGACCAATGATGTACCCAACAGCCCCGCCTATGTACG GCGGCTATGTGTTTAATCAGCACCCAAGTCAATTCAATCCCGGACCTAAT GATTACTCGGGCAAGGGCCTTGGGACTCTTCAAACGGAAACATTCGTGCA TCCTTTTGCCGTATCGATGAGCCCAGGGATGCCTGTACCGCAACATGGCA CAAGCATGTCTCCAGTTGCTGGAAGTAGTGTATAG back to topprotein sequence of Gchil687.t1 >Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=845bp
MPSSYLRHSLDDPPSRARQIASSFRRRSLASSPASSLPSKRPAPDYLHPD SPPRAVIRRTDSSSSMSESPDSEPNCNAPSSPVNAPSRPIAPHPEQFDHT SPEHPSASESNQPEACDFVIVPAEHVGLIIGKHGDTIKAIQNSSNAIVSM DRSYPSRDRKFRISGTEDAVSHCRSLIERRLEAVRNRSDSALETREMWIP VSKIGLVIGAGGATIRSIKEKTGAYATVHNDQVEADRKLLTIHGTAQQAS HARQIIVEILQSAPHTPSRDPSLGASDDSTAMYIPRAAVGSVIGSRGTTL RSLHQKSGAFIRVASDEEAGTSPERQIIISGSAAAVHRARSMIHFVIREG SLRHFDEPHADIHHLQRNDEHPIDSFSRMRDIRRRAYSQGRKEDSFILSA EHIGLLIGKNGTNIREMQNRSGAIIEVTGKNESERESSHRTVSIFGSPTE VKIAKLLIEEKIGINHEEQKPDAEQPNLILAPQDSNIRPKSNCNTEDVNT NSCPASKGEEAEKDEHNKENAPSKEIKETSTVTEAQRVSKTTNIPNKERE NETESKDDGGHSEDSLANTAVESILGASKRNSTDEKQRRVSQNSRTRSNS GPKLADLNKRHSKDGSKHHGVAVMQQQHPSTPVPLPQPHHSYAPPLVSHP QYHPHYPPPPTYYGEPNLSAYPYYGPPPPHSTYAHSMPAMSTPISVNGME GVRSLGSPHGSISIPCQQSEAVSATTTENSKSESDKRGPVNNGSMKTGNS APVQPQAPAQFYPTFYQQQPGGPMMYPTAPPMYGGYVFNQHPSQFNPGPN DYSGKGLGTLQTETFVHPFAVSMSPGMPVPQHGTSMSPVAGSSV* back to topmRNA from alignment at tig00004431_pilon:38657..41191+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2535bp|location=Sequence derived from alignment at tig00004431_pilon:38657..41191+ (Gracilaria chilensis NLEC103_M9 male) ATGCCATCTTCGTACCTGCGGCATTCTCTCGATGACCCTCCTTCACGCGC
AAGGCAGATAGCAAGCTCTTTTCGTAGACGGTCTCTGGCTTCTAGTCCCG
CATCCTCCTTGCCCTCCAAGCGACCCGCTCCCGATTATCTACATCCCGAT
TCCCCACCGCGAGCTGTTATTCGTCGAACCGACTCCTCTTCTTCGATGTC
GGAATCCCCGGATTCAGAACCGAATTGCAATGCTCCCTCATCCCCCGTGA
ACGCCCCTTCACGCCCTATTGCTCCCCATCCTGAGCAATTCGACCACACT
AGTCCCGAACATCCGTCTGCGTCCGAATCCAATCAACCCGAGGCATGTGA
CTTTGTGATTGTGCCAGCTGAACATGTAGGCCTcatcattggaaaacacg
gcgataccatcaaggccatacagaactcctctaaTGCTATTGTTTCCATG
GATCGAAGCTATCCCAGTCGCGATCGAAAGTTCCGTATCAGTGGCACCGA
GGATGCTGTTTCCCACTGTCGCTCGCTCATTGAGCGCCGTCTTGAAGCTG
TCCGTAACCGTTCAGACTCAGCTTTAGAAACTCGAGAGATGTGGATTCCA
GTCTCCAAAATTGGGCTCGTCATTGGTGCGGGTGGCGCTACCATTCGTTC
TATCAAAGAGAAGACGGGCGCTTATGCCACCGTTCACAACGACCAGGTGG
AGGCAGATCGAAAGTTACTTACCATTCACGGCACAGCACAGCAAGCCTCC
CATGCACGCCAGATCATAGTTGAAATCCTTCAAAGCGCACCACACACTCC
CTCGCGCGACCCTTCTCTCGGCGCGAGTGATGATTCAACTGCCATGTATA
TCCCTCGTGCGGCTGTTGGTTCTGTGATCGGCTCCCGAGGAACTACGTTG
CGATCGTTGCATCAGAAAAGCGGTGCGTTTATAAGGGTTGCCTCAGATGA
GGAAGCTGGCACGAGTCCCGAGAGACAGATTATAATATCAGGCAGTGCCG
CGGCGGTTCATCGCGCTCGCTCCATGATCCATTTTGTAATACGAGAAGGT
TCCCTGCGACACTTTGATGAGCCTCATGCTGATATCCATCATCTGCAACG
AAATGACGAGCACCCAATCGACAGTTTTTCTCGTATGCGCGACATCCGCC
GGCGTGCATACTCACAAGGAAGGAAGGAAGATTCCTTTATACTGTCCGCC
GAGCACATTGGATTGCTGATTGGCAAGAATGGTACAAACATTCGTGAAAT
GCAGAATCGATCAGGGGCAATCATTGAAGTTACAGGCAAGAATGAATCCG
AACGAGAAAGCTCCCATCGCACTGTTTCAATATTCGGGTCCCCTACTGAA
GTCAAGATTGCGAAGTTGCTCATCGAAGAAAAAATTGGCATTAATCACGA
AGAGCAAAAACCTGACGCAGAGCAGCCAAATTTGATTCTGGCACCACAAG
ATTCGAACATCCGTCCGAAAAGCAATTGCAATACTGAAGATGTCAATACA
AACAGCTGCCCAGCTTCCAAAGGTGAGGAGGCGGAGAAAGATGAACACAA
CAAGGAAAATGCACCGTCAAAAGAAATCAAAGAAACCTCCACAGTCACCG
AAGCGCAGCGGGTGTCGAAAACTACGAACATTCCaaacaaagaaagagag
aacgaaacggaaagcaagGACGATGGAGGGCATTCAGAAGACTCTTTGGC
AAACACCGCTGTTGAAAGCATCCTTGGTGCTTCGAAAAGAAACTCCACAG
ACGAAAAACAGCGAAGAGTGAGTCAGAACTCCCGAACTCGAAGTAATTCT
GGACCGAAGCTAGCTGATTTGAACAAGAGGCATTCGAAGGATGGTTCGAA
ACATCATGGGGTGGCAGTGATGCAACAACAACATCCATCAACTCCCGTTC
CTCTACCTCAACCACACCATTCTTATGCCCCTCCTTTGGTTTCACACCCA
CAGTATCATCCTCACTACCCTCCCCCTCCCACATATTATGGTGAACCGAA
CTTGAGCGCTTATCCGTACTACGGTCCACCCCCGCCGCATTCAACATATG
CTCACAGCATGCCTGCGATGTCGACGCCGATATCTGTCAATGGCATGGAA
GGGGTACGTTCTCTTGGTTCACCACATGGGTCTATTTCCATTCCATGCCA
ACAGAGCGAAGCTGTTTCTGCTACCACCACGGAAAACAGCAAATCAGAGA
GCGACAAGCGAGGACCAGTCAATAATGGATCTATGAAAACAGGAAACTCC
GCACCAGTGCAACCGCAGGCTCCTGCACAATTTTACCCCACATTTTATCA
ACAACAGCCTGGCGGACCAATGATGTACCCAACAGCCCCGCCTATGTACG
GCGGCTATGTGTTTAATCAGCACCCAAGTCAATTCAATCCCGGACCTAAT
GATTACTCGGGCAAGGGCCTTGGGACTCTTCAAACGGAAACATTCGTGCA
TCCTTTTGCCGTATCGATGAGCCCAGGGATGCCTGTACCGCAACATGGCA
CAAGCATGTCTCCAGTTGCTGGAAGTAGTGTATAG back to topCoding sequence (CDS) from alignment at tig00004431_pilon:38657..41191+ >Gchil687.t1 ID=Gchil687.t1|Name=Gchil687.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2535bp|location=Sequence derived from alignment at tig00004431_pilon:38657..41191+ (Gracilaria chilensis NLEC103_M9 male) ATGCCATCTTCGTACCTGCGGCATTCTCTCGATGACCCTCCTTCACGCGC AAGGCAGATAGCAAGCTCTTTTCGTAGACGGTCTCTGGCTTCTAGTCCCG CATCCTCCTTGCCCTCCAAGCGACCCGCTCCCGATTATCTACATCCCGAT TCCCCACCGCGAGCTGTTATTCGTCGAACCGACTCCTCTTCTTCGATGTC GGAATCCCCGGATTCAGAACCGAATTGCAATGCTCCCTCATCCCCCGTGA ACGCCCCTTCACGCCCTATTGCTCCCCATCCTGAGCAATTCGACCACACT AGTCCCGAACATCCGTCTGCGTCCGAATCCAATCAACCCGAGGCATGTGA CTTTGTGATTGTGCCAGCTGAACATGTAGGCCTcatcattggaaaacacg gcgataccatcaaggccatacagaactcctctaaTGCTATTGTTTCCATG GATCGAAGCTATCCCAGTCGCGATCGAAAGTTCCGTATCAGTGGCACCGA GGATGCTGTTTCCCACTGTCGCTCGCTCATTGAGCGCCGTCTTGAAGCTG TCCGTAACCGTTCAGACTCAGCTTTAGAAACTCGAGAGATGTGGATTCCA GTCTCCAAAATTGGGCTCGTCATTGGTGCGGGTGGCGCTACCATTCGTTC TATCAAAGAGAAGACGGGCGCTTATGCCACCGTTCACAACGACCAGGTGG AGGCAGATCGAAAGTTACTTACCATTCACGGCACAGCACAGCAAGCCTCC CATGCACGCCAGATCATAGTTGAAATCCTTCAAAGCGCACCACACACTCC CTCGCGCGACCCTTCTCTCGGCGCGAGTGATGATTCAACTGCCATGTATA TCCCTCGTGCGGCTGTTGGTTCTGTGATCGGCTCCCGAGGAACTACGTTG CGATCGTTGCATCAGAAAAGCGGTGCGTTTATAAGGGTTGCCTCAGATGA GGAAGCTGGCACGAGTCCCGAGAGACAGATTATAATATCAGGCAGTGCCG CGGCGGTTCATCGCGCTCGCTCCATGATCCATTTTGTAATACGAGAAGGT TCCCTGCGACACTTTGATGAGCCTCATGCTGATATCCATCATCTGCAACG AAATGACGAGCACCCAATCGACAGTTTTTCTCGTATGCGCGACATCCGCC GGCGTGCATACTCACAAGGAAGGAAGGAAGATTCCTTTATACTGTCCGCC GAGCACATTGGATTGCTGATTGGCAAGAATGGTACAAACATTCGTGAAAT GCAGAATCGATCAGGGGCAATCATTGAAGTTACAGGCAAGAATGAATCCG AACGAGAAAGCTCCCATCGCACTGTTTCAATATTCGGGTCCCCTACTGAA GTCAAGATTGCGAAGTTGCTCATCGAAGAAAAAATTGGCATTAATCACGA AGAGCAAAAACCTGACGCAGAGCAGCCAAATTTGATTCTGGCACCACAAG ATTCGAACATCCGTCCGAAAAGCAATTGCAATACTGAAGATGTCAATACA AACAGCTGCCCAGCTTCCAAAGGTGAGGAGGCGGAGAAAGATGAACACAA CAAGGAAAATGCACCGTCAAAAGAAATCAAAGAAACCTCCACAGTCACCG AAGCGCAGCGGGTGTCGAAAACTACGAACATTCCaaacaaagaaagagag aacgaaacggaaagcaagGACGATGGAGGGCATTCAGAAGACTCTTTGGC AAACACCGCTGTTGAAAGCATCCTTGGTGCTTCGAAAAGAAACTCCACAG ACGAAAAACAGCGAAGAGTGAGTCAGAACTCCCGAACTCGAAGTAATTCT GGACCGAAGCTAGCTGATTTGAACAAGAGGCATTCGAAGGATGGTTCGAA ACATCATGGGGTGGCAGTGATGCAACAACAACATCCATCAACTCCCGTTC CTCTACCTCAACCACACCATTCTTATGCCCCTCCTTTGGTTTCACACCCA CAGTATCATCCTCACTACCCTCCCCCTCCCACATATTATGGTGAACCGAA CTTGAGCGCTTATCCGTACTACGGTCCACCCCCGCCGCATTCAACATATG CTCACAGCATGCCTGCGATGTCGACGCCGATATCTGTCAATGGCATGGAA GGGGTACGTTCTCTTGGTTCACCACATGGGTCTATTTCCATTCCATGCCA ACAGAGCGAAGCTGTTTCTGCTACCACCACGGAAAACAGCAAATCAGAGA GCGACAAGCGAGGACCAGTCAATAATGGATCTATGAAAACAGGAAACTCC GCACCAGTGCAACCGCAGGCTCCTGCACAATTTTACCCCACATTTTATCA ACAACAGCCTGGCGGACCAATGATGTACCCAACAGCCCCGCCTATGTACG GCGGCTATGTGTTTAATCAGCACCCAAGTCAATTCAATCCCGGACCTAAT GATTACTCGGGCAAGGGCCTTGGGACTCTTCAAACGGAAACATTCGTGCA TCCTTTTGCCGTATCGATGAGCCCAGGGATGCCTGTACCGCAACATGGCA CAAGCATGTCTCCAGTTGCTGGAAGTAGTGTATAG back to top
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