Gchil6865.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6865.t1
Unique NameGchil6865.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:456155..456868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LH20
Preferred nameALKBH8
PFAMs2OG-FeII_Oxy_2,DUF1891,Methyltransf_11,RRM_1
Max annot lvl2759|Eukaryota
KEGG koko:K10770,ko:K14685,ko:K17867,ko:K18670
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016604,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0055114,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
Evalue2.53e-09
EggNOG OGsCOG3145@1|root,KOG4176@2759|Eukaryota
EC2.1.1.229,2.7.12.1
Descriptiondioxygenase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko01001,ko02000,ko03012,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6865Gchil6865Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 456155..456868 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6865.t1.start1Gchil6865.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 456155..456157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6865.t1.CDS1Gchil6865.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 456155..456868 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6865.t1.exon1Gchil6865.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 456155..456868 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6865.t1.stop1Gchil6865.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 456866..456868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6865.t1Gchil6865.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 456155..456868 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6865.t1 ID=Gchil6865.t1|Name=Gchil6865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=238bp
MFTPRVSRSVSASGKPSEIGAPGFHLFPGVFAKDEECLLKAIEATDPTWT
NYMFRMTKNYGPAYDLRKKRFLFGERAPKQISLPSYATNTVLPRLRSLVS
LLNDFNPNQLAIGLYKVPGESHILPHNDCENGNIGTAVVGVCLAGACTMT
LILRSRYSGVGCDVKKDVYLPAGAVYVMSGDALRIWEHAIFPGKTETTRY
SLTFRDVSPRDSENFPTRLPERGQRFRQSLLKKHLPS*
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spliced messenger RNA

>Gchil6865.t1 ID=Gchil6865.t1|Name=Gchil6865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004376_pilon:456155..456868+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACTCCTCGAGTTTCAAGAAGTGTGTCGGCGTCAGGTAAGCCTTC
GGAAATCGGAGCACCTGGATTTCACCTTTTCCCTGGTGTTTTCGCCAAAG
ATGAAGAATGCCTTCTCAAAGCAATTGAAGCAACAGATCCGACTTGGACC
AACTACATGTTTCGAATGACAAAAAACTATGGGCCTGCTTATGACCTTCG
CAAAAAGAGATTTCTCTTTGGTGAACGGGCCCCGAAACAAATCTCTCTCC
CCTCGTACGCCACAAATACTGTACTTCCCCGCCTGCGATCATTAGTGAGT
CTCCTGAATGACTTCAACCCTAATCAACTGGCTATTGGTCTCTACAAAGT
GCCAGGAGAGTCTCACATACTGCCGCACAATGACTGTGAAAACGGAAACA
TTGGCACAGCGGTGGTGGGAGTCTGTCTTGCGGGTGCATGTACAATGACT
CTCATACTAAGGTCTCGGTACAGCGGTGTCGGCTGCGATGTTAAAAAAGA
CGTTTATCTCCCGGCAGGCGCCGTATACGTTATGTCGGGAGATGCTCTTC
GAATTTGGGAGCATGCCATCTTTCCTGGCAAAACAGAAACAACCAGGTAT
AGCCTTACTTTCCGAGACGTGAGCCCTAGAGACTCAGAAAACTTTCCTAC
ACGCCTGCCCGAACGCGGACAACGTTTTAGGCAATCATTGCTGAAAAAGC
ATCTTCCAAGCTAG
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protein sequence of Gchil6865.t1

>Gchil6865.t1 ID=Gchil6865.t1|Name=Gchil6865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MFTPRVSRSVSASGKPSEIGAPGFHLFPGVFAKDEECLLKAIEATDPTWT
NYMFRMTKNYGPAYDLRKKRFLFGERAPKQISLPSYATNTVLPRLRSLVS
LLNDFNPNQLAIGLYKVPGESHILPHNDCENGNIGTAVVGVCLAGACTMT
LILRSRYSGVGCDVKKDVYLPAGAVYVMSGDALRIWEHAIFPGKTETTRY
SLTFRDVSPRDSENFPTRLPERGQRFRQSLLKKHLPS*
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mRNA from alignment at tig00004376_pilon:456155..456868+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6865.t1 ID=Gchil6865.t1|Name=Gchil6865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004376_pilon:456155..456868+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTACTCCTCGAGTTTCAAGAAGTGTGTCGGCGTCAGGTAAGCCTTC
GGAAATCGGAGCACCTGGATTTCACCTTTTCCCTGGTGTTTTCGCCAAAG
ATGAAGAATGCCTTCTCAAAGCAATTGAAGCAACAGATCCGACTTGGACC
AACTACATGTTTCGAATGACAAAAAACTATGGGCCTGCTTATGACCTTCG
CAAAAAGAGATTTCTCTTTGGTGAACGGGCCCCGAAACAAATCTCTCTCC
CCTCGTACGCCACAAATACTGTACTTCCCCGCCTGCGATCATTAGTGAGT
CTCCTGAATGACTTCAACCCTAATCAACTGGCTATTGGTCTCTACAAAGT
GCCAGGAGAGTCTCACATACTGCCGCACAATGACTGTGAAAACGGAAACA
TTGGCACAGCGGTGGTGGGAGTCTGTCTTGCGGGTGCATGTACAATGACT
CTCATACTAAGGTCTCGGTACAGCGGTGTCGGCTGCGATGTTAAAAAAGA
CGTTTATCTCCCGGCAGGCGCCGTATACGTTATGTCGGGAGATGCTCTTC
GAATTTGGGAGCATGCCATCTTTCCTGGCAAAACAGAAACAACCAGGTAT
AGCCTTACTTTCCGAGACGTGAGCCCTAGAGACTCAGAAAACTTTCCTAC
ACGCCTGCCCGAACGCGGACAACGTTTTAGGCAATCATTGCTGAAAAAGC
ATCTTCCAAGCTAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:456155..456868+

>Gchil6865.t1 ID=Gchil6865.t1|Name=Gchil6865.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00004376_pilon:456155..456868+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTACTCCTCGAGTTTCAAGAAGTGTGTCGGCGTCAGGTAAGCCTTC
GGAAATCGGAGCACCTGGATTTCACCTTTTCCCTGGTGTTTTCGCCAAAG
ATGAAGAATGCCTTCTCAAAGCAATTGAAGCAACAGATCCGACTTGGACC
AACTACATGTTTCGAATGACAAAAAACTATGGGCCTGCTTATGACCTTCG
CAAAAAGAGATTTCTCTTTGGTGAACGGGCCCCGAAACAAATCTCTCTCC
CCTCGTACGCCACAAATACTGTACTTCCCCGCCTGCGATCATTAGTGAGT
CTCCTGAATGACTTCAACCCTAATCAACTGGCTATTGGTCTCTACAAAGT
GCCAGGAGAGTCTCACATACTGCCGCACAATGACTGTGAAAACGGAAACA
TTGGCACAGCGGTGGTGGGAGTCTGTCTTGCGGGTGCATGTACAATGACT
CTCATACTAAGGTCTCGGTACAGCGGTGTCGGCTGCGATGTTAAAAAAGA
CGTTTATCTCCCGGCAGGCGCCGTATACGTTATGTCGGGAGATGCTCTTC
GAATTTGGGAGCATGCCATCTTTCCTGGCAAAACAGAAACAACCAGGTAT
AGCCTTACTTTCCGAGACGTGAGCCCTAGAGACTCAGAAAACTTTCCTAC
ACGCCTGCCCGAACGCGGACAACGTTTTAGGCAATCATTGCTGAAAAAGC
ATCTTCCAAGCTAG
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