Gchil6858.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6858.t1
Unique Name	Gchil6858.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:435068..436597 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010243074.1
PFAMs	tRNA-synt_2d
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01889
KEGG Reaction	R03660
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Evalue	2.66e-192
EggNOG OGs	COG0016@1\|root,KOG2784@2759\|Eukaryota,37R79@33090\|Viridiplantae,3GFPA@35493\|Streptophyta
EC	6.1.1.20
Description	Phenylalanine--tRNA ligase alpha subunit
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6858	Gchil6858	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 435068..436597 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6858.t1.start1	Gchil6858.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 435068..435070 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6858.t1.CDS1	Gchil6858.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 435068..436597 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6858.t1.exon1	Gchil6858.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 435068..436597 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6858.t1.stop1	Gchil6858.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 436595..436597 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6858.t1	Gchil6858.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 435068..436597 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:435068..436597+
coding sequence from alignment at tig00004376_pilon:435068..436597+

mRNA sequence

>Gchil6858.t1 ID=Gchil6858.t1|Name=Gchil6858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp
MAADVTTEEALLRSVEELSSGSDFIESLSLASKLGTDHQRLVDGILKSLN
AKLAIKLEPVTHNRWEISSEGLSYADSTSPEVAFFNAVREALNVGEMPLS
DQLEKKVSKQVMIRGKQQALRRKWVSIDKQTKAFKVNGSVNVTDDVADAL
RKIRDQDGSPDGVSGAMLKDLKSRKLASLKPYKTFKIFAGERLEDARKQQ
ATELTKEMLESGGWKSVSFKPYNFEAEGKPTSGGYLHTLLKVREQFRLIF
LEMGFEEMPTNNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFASVM
DRDYMGRVRKVHEEGGFGSRGYRYDWSEQEARKNILRTHTTAVSSRMLYL
LAQQKEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGDLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLKKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGVRNIRDLFGHKVDLKAIQ
TNPICRLTF*

spliced messenger RNA

>Gchil6858.t1 ID=Gchil6858.t1|Name=Gchil6858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00004376_pilon:435068..436597+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCGGACGTAACAACCGAAGAAGCTCTGCTTAGATCGGTAGAAGA
GCTCAGCTCAGGTTCTGATTTCATCGAGTCTCTCTCTCTGGCGAGCAAAC
TTGGAACTGATCATCAACGTTTGGTGGATGGAATTCTCAAGTCACTGAAT
GCTAAACTAGCTATAAAGTTGGAACCGGTAACACATAATCGTTGGGAGAT
CTCTTCAGAAGGCTTGTCTTATGCGGACTCCACATCACCTGAAGTCGCTT
TTTTCAATGCGGTCCGGGAAGCTCTTAATGTCGGAGAGATGCCTTTGTCG
GATCAATTAGAGAAAAAGGTTTCCAAGCAGGTCATGATCAGAGGGAAGCA
ACAAGCACTGCGTCGGAAATGGGTTTCTATTGACAAACAAACGAAGGCTT
TTAAGGTCAATGGAAGCGTGAATGTAACTGACGATGTTGCAGACGCTCTT
CGAAAAATTCGTGATCAAGATGGGTCTCCCGATGGAGTTTCAGGCGCTAT
GCTCAAAGACCTTAAATCCAGGAAGCTTGCATCGCTGAAGCCATATAAGA
CCTTCAAGATATTCGCCGGAGAAAGGCTGGAAGATGCTCGCAAACAGCAA
GCAACCGAGCTAACGAAAGAGATGCTCGAGTCTGGGGGGTGGAAATCTGT
TTCTTTCAAGCCTTATAACTTTGAAGCGGAAGGGAAACCAACGAGTGGCG
GATATCTGCATACTTTGCTGAAAGTTCGTGAACAATTCCGCCTGATATTC
TTAGAGATGGGCTTCGAAGAGATGCCGACGAATAACTATGTTGAATCGTC
ATTCTGGAACTTTGACGCTCTGTTCCAACCACAACAGCACCCAGCGAGAG
ATGAGCACGATACTTTCTTTCTGTCTGATCCTGAATTTGCTAGTGTGATG
GATAGGGACTACATGGGGAGGGTGCGCAAGGTTCATGAGGAAGGTGGGTT
TGGATCCAGAGGCTATCGGTACGACTGGTCGGAGCAGGAAGCCCGAAAGA
ACATTTTGCGAACTCATACTACTGCTGTGTCAAGTCGTATGTTGTATCTT
CTTGCCCAACAGAAAGAATTCAAGCCGAAGAAATACTTTTCCATTGATAG
AGTGTTCCGGAATGAAACTCTTGATGCAACGCATCTAGCGGAATTTCACC
AAATCGAAGGTCTGGTCGCGGATCGAAACCTTTCTTTAGGAGATTTGAAA
GGCATCATTCATGAGTTCTTCAAGAAGATGGGTATGTCAAAATTGCGTTT
TAAACCAACCCATAACCCATACACAACTCCATCTCTAGAGATCCACTCCT
ACCATGAAGGTCTTAAGAAATGGGTTGAAGTTGGAAACTCCGGTGTGTTC
CGACCAGAAATGATCAGGCCCATGGGAATTCCCGAAGATGTTACGGTGAT
TGCTTGGGGTTTGAGCCTCGAACGACCAACTATGATCCGTTATGGGGTTC
GAAACATTCGTGACCTCTTTGGTCATAAGGTAGATTTGAAAGCAATCCAG
ACTAATCCTATATGCCGACTAACTTTCTAA

protein sequence of Gchil6858.t1

>Gchil6858.t1 ID=Gchil6858.t1|Name=Gchil6858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=510bp
MAADVTTEEALLRSVEELSSGSDFIESLSLASKLGTDHQRLVDGILKSLN
AKLAIKLEPVTHNRWEISSEGLSYADSTSPEVAFFNAVREALNVGEMPLS
DQLEKKVSKQVMIRGKQQALRRKWVSIDKQTKAFKVNGSVNVTDDVADAL
RKIRDQDGSPDGVSGAMLKDLKSRKLASLKPYKTFKIFAGERLEDARKQQ
ATELTKEMLESGGWKSVSFKPYNFEAEGKPTSGGYLHTLLKVREQFRLIF
LEMGFEEMPTNNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFASVM
DRDYMGRVRKVHEEGGFGSRGYRYDWSEQEARKNILRTHTTAVSSRMLYL
LAQQKEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGDLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLKKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGVRNIRDLFGHKVDLKAIQ
TNPICRLTF*

mRNA from alignment at tig00004376_pilon:435068..436597+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6858.t1 ID=Gchil6858.t1|Name=Gchil6858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00004376_pilon:435068..436597+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGCGGACGTAACAACCGAAGAAGCTCTGCTTAGATCGGTAGAAGA
GCTCAGCTCAGGTTCTGATTTCATCGAGTCTCTCTCTCTGGCGAGCAAAC
TTGGAACTGATCATCAACGTTTGGTGGATGGAATTCTCAAGTCACTGAAT
GCTAAACTAGCTATAAAGTTGGAACCGGTAACACATAATCGTTGGGAGAT
CTCTTCAGAAGGCTTGTCTTATGCGGACTCCACATCACCTGAAGTCGCTT
TTTTCAATGCGGTCCGGGAAGCTCTTAATGTCGGAGAGATGCCTTTGTCG
GATCAATTAGAGAAAAAGGTTTCCAAGCAGGTCATGATCAGAGGGAAGCA
ACAAGCACTGCGTCGGAAATGGGTTTCTATTGACAAACAAACGAAGGCTT
TTAAGGTCAATGGAAGCGTGAATGTAACTGACGATGTTGCAGACGCTCTT
CGAAAAATTCGTGATCAAGATGGGTCTCCCGATGGAGTTTCAGGCGCTAT
GCTCAAAGACCTTAAATCCAGGAAGCTTGCATCGCTGAAGCCATATAAGA
CCTTCAAGATATTCGCCGGAGAAAGGCTGGAAGATGCTCGCAAACAGCAA
GCAACCGAGCTAACGAAAGAGATGCTCGAGTCTGGGGGGTGGAAATCTGT
TTCTTTCAAGCCTTATAACTTTGAAGCGGAAGGGAAACCAACGAGTGGCG
GATATCTGCATACTTTGCTGAAAGTTCGTGAACAATTCCGCCTGATATTC
TTAGAGATGGGCTTCGAAGAGATGCCGACGAATAACTATGTTGAATCGTC
ATTCTGGAACTTTGACGCTCTGTTCCAACCACAACAGCACCCAGCGAGAG
ATGAGCACGATACTTTCTTTCTGTCTGATCCTGAATTTGCTAGTGTGATG
GATAGGGACTACATGGGGAGGGTGCGCAAGGTTCATGAGGAAGGTGGGTT
TGGATCCAGAGGCTATCGGTACGACTGGTCGGAGCAGGAAGCCCGAAAGA
ACATTTTGCGAACTCATACTACTGCTGTGTCAAGTCGTATGTTGTATCTT
CTTGCCCAACAGAAAGAATTCAAGCCGAAGAAATACTTTTCCATTGATAG
AGTGTTCCGGAATGAAACTCTTGATGCAACGCATCTAGCGGAATTTCACC
AAATCGAAGGTCTGGTCGCGGATCGAAACCTTTCTTTAGGAGATTTGAAA
GGCATCATTCATGAGTTCTTCAAGAAGATGGGTATGTCAAAATTGCGTTT
TAAACCAACCCATAACCCATACACAACTCCATCTCTAGAGATCCACTCCT
ACCATGAAGGTCTTAAGAAATGGGTTGAAGTTGGAAACTCCGGTGTGTTC
CGACCAGAAATGATCAGGCCCATGGGAATTCCCGAAGATGTTACGGTGAT
TGCTTGGGGTTTGAGCCTCGAACGACCAACTATGATCCGTTATGGGGTTC
GAAACATTCGTGACCTCTTTGGTCATAAGGTAGATTTGAAAGCAATCCAG
ACTAATCCTATATGCCGACTAACTTTCTAA

Coding sequence (CDS) from alignment at tig00004376_pilon:435068..436597+

>Gchil6858.t1 ID=Gchil6858.t1|Name=Gchil6858.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00004376_pilon:435068..436597+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGCGGACGTAACAACCGAAGAAGCTCTGCTTAGATCGGTAGAAGA
GCTCAGCTCAGGTTCTGATTTCATCGAGTCTCTCTCTCTGGCGAGCAAAC
TTGGAACTGATCATCAACGTTTGGTGGATGGAATTCTCAAGTCACTGAAT
GCTAAACTAGCTATAAAGTTGGAACCGGTAACACATAATCGTTGGGAGAT
CTCTTCAGAAGGCTTGTCTTATGCGGACTCCACATCACCTGAAGTCGCTT
TTTTCAATGCGGTCCGGGAAGCTCTTAATGTCGGAGAGATGCCTTTGTCG
GATCAATTAGAGAAAAAGGTTTCCAAGCAGGTCATGATCAGAGGGAAGCA
ACAAGCACTGCGTCGGAAATGGGTTTCTATTGACAAACAAACGAAGGCTT
TTAAGGTCAATGGAAGCGTGAATGTAACTGACGATGTTGCAGACGCTCTT
CGAAAAATTCGTGATCAAGATGGGTCTCCCGATGGAGTTTCAGGCGCTAT
GCTCAAAGACCTTAAATCCAGGAAGCTTGCATCGCTGAAGCCATATAAGA
CCTTCAAGATATTCGCCGGAGAAAGGCTGGAAGATGCTCGCAAACAGCAA
GCAACCGAGCTAACGAAAGAGATGCTCGAGTCTGGGGGGTGGAAATCTGT
TTCTTTCAAGCCTTATAACTTTGAAGCGGAAGGGAAACCAACGAGTGGCG
GATATCTGCATACTTTGCTGAAAGTTCGTGAACAATTCCGCCTGATATTC
TTAGAGATGGGCTTCGAAGAGATGCCGACGAATAACTATGTTGAATCGTC
ATTCTGGAACTTTGACGCTCTGTTCCAACCACAACAGCACCCAGCGAGAG
ATGAGCACGATACTTTCTTTCTGTCTGATCCTGAATTTGCTAGTGTGATG
GATAGGGACTACATGGGGAGGGTGCGCAAGGTTCATGAGGAAGGTGGGTT
TGGATCCAGAGGCTATCGGTACGACTGGTCGGAGCAGGAAGCCCGAAAGA
ACATTTTGCGAACTCATACTACTGCTGTGTCAAGTCGTATGTTGTATCTT
CTTGCCCAACAGAAAGAATTCAAGCCGAAGAAATACTTTTCCATTGATAG
AGTGTTCCGGAATGAAACTCTTGATGCAACGCATCTAGCGGAATTTCACC
AAATCGAAGGTCTGGTCGCGGATCGAAACCTTTCTTTAGGAGATTTGAAA
GGCATCATTCATGAGTTCTTCAAGAAGATGGGTATGTCAAAATTGCGTTT
TAAACCAACCCATAACCCATACACAACTCCATCTCTAGAGATCCACTCCT
ACCATGAAGGTCTTAAGAAATGGGTTGAAGTTGGAAACTCCGGTGTGTTC
CGACCAGAAATGATCAGGCCCATGGGAATTCCCGAAGATGTTACGGTGAT
TGCTTGGGGTTTGAGCCTCGAACGACCAACTATGATCCGTTATGGGGTTC
GAAACATTCGTGACCTCTTTGGTCATAAGGTAGATTTGAAAGCAATCCAG
ACTAATCCTATATGCCGACTAACTTTCTAA