Gchil6854.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6854.t1
Unique NameGchil6854.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:428545..428940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD06077
PFAMsUMP1
Max annot lvl2759|Eukaryota
KEGG koko:K11599
KEGG Pathwayko03050,map03050
GOsGO:0000003,GO:0001541,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009987,GO:0010001,GO:0010467,GO:0014003,GO:0016043,GO:0019538,GO:0021782,GO:0022008,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042063,GO:0042552,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051716,GO:0061458,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
Evalue5.86e-16
EggNOG OGsKOG3061@1|root,KOG3061@2759|Eukaryota
Descriptionproteasome assembly
COG categoryGM
BRITEko00000,ko00001,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6854Gchil6854Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 428545..428940 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6854.t1.start1Gchil6854.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 428545..428547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6854.t1.CDS1Gchil6854.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 428545..428940 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6854.t1.exon1Gchil6854.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 428545..428940 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6854.t1.stop1Gchil6854.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 428938..428940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6854.t1Gchil6854.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 428545..428940 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6854.t1 ID=Gchil6854.t1|Name=Gchil6854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=132bp
MDRPTHTQLSPDVAPGSTLKYSATPLHPVQTIQANAHKAQQLTRRKLQAA
AYGAALPMRAAMHQHMLSQCQRLPGLPSSYAGLDSFTGRDEKIDFEDFMN
LPHHSPYMPQQQPREQLEQILGVTARSQAPL*
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spliced messenger RNA

>Gchil6854.t1 ID=Gchil6854.t1|Name=Gchil6854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004376_pilon:428545..428940+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCCCCACCCACACGCAGCTCAGCCCCGATGTGGCGCCCGGCTC
CACGCTCAAGTACTCCGCCACGCCGCTGCACCCCGTCCAGACCATCCAGG
CAAATGCGCACAAAGCCCAGCAGCTCACCCGCCGTAAGCTGCAGGCCGCC
GCCTATGGTGCCGCCCTGCCCATGCGCGCCGCCATGCACCAACACATGCT
TTCGCAGTGCCAACGTCTTCCAGGTCTGCCGTCCTCCTACGCCGGCCTCG
ACTCCTTCACCGGCCGCGATGAGAAGATCGACTTCGAGGACTTCATGAAC
CTGCCACACCACTCTCCCTACATGCCGCAGCAGCAACCGCGAGAACAATT
GGAACAAATTCTCGGCGTCACTGCTCGCTCTCAGGCGCCGCTATAG
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protein sequence of Gchil6854.t1

>Gchil6854.t1 ID=Gchil6854.t1|Name=Gchil6854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=132bp
MDRPTHTQLSPDVAPGSTLKYSATPLHPVQTIQANAHKAQQLTRRKLQAA
AYGAALPMRAAMHQHMLSQCQRLPGLPSSYAGLDSFTGRDEKIDFEDFMN
LPHHSPYMPQQQPREQLEQILGVTARSQAPL*
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mRNA from alignment at tig00004376_pilon:428545..428940+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6854.t1 ID=Gchil6854.t1|Name=Gchil6854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00004376_pilon:428545..428940+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGCCCCACCCACACGCAGCTCAGCCCCGATGTGGCGCCCGGCTC
CACGCTCAAGTACTCCGCCACGCCGCTGCACCCCGTCCAGACCATCCAGG
CAAATGCGCACAAAGCCCAGCAGCTCACCCGCCGTAAGCTGCAGGCCGCC
GCCTATGGTGCCGCCCTGCCCATGCGCGCCGCCATGCACCAACACATGCT
TTCGCAGTGCCAACGTCTTCCAGGTCTGCCGTCCTCCTACGCCGGCCTCG
ACTCCTTCACCGGCCGCGATGAGAAGATCGACTTCGAGGACTTCATGAAC
CTGCCACACCACTCTCCCTACATGCCGCAGCAGCAACCGCGAGAACAATT
GGAACAAATTCTCGGCGTCACTGCTCGCTCTCAGGCGCCGCTATAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:428545..428940+

>Gchil6854.t1 ID=Gchil6854.t1|Name=Gchil6854.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=396bp|location=Sequence derived from alignment at tig00004376_pilon:428545..428940+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGCCCCACCCACACGCAGCTCAGCCCCGATGTGGCGCCCGGCTC
CACGCTCAAGTACTCCGCCACGCCGCTGCACCCCGTCCAGACCATCCAGG
CAAATGCGCACAAAGCCCAGCAGCTCACCCGCCGTAAGCTGCAGGCCGCC
GCCTATGGTGCCGCCCTGCCCATGCGCGCCGCCATGCACCAACACATGCT
TTCGCAGTGCCAACGTCTTCCAGGTCTGCCGTCCTCCTACGCCGGCCTCG
ACTCCTTCACCGGCCGCGATGAGAAGATCGACTTCGAGGACTTCATGAAC
CTGCCACACCACTCTCCCTACATGCCGCAGCAGCAACCGCGAGAACAATT
GGAACAAATTCTCGGCGTCACTGCTCGCTCTCAGGCGCCGCTATAG
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